BAC Information

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BAC

Clone NameB6Ng01-260C18
Chromosome2 (Build37)
Map Location 56,458,873 - 56,460,148
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260C18.bB6Ng01-260C18.g
ACCGA065159GA065160
length1,1921,113
definitionB6Ng01-260C18.b B6Ng01-260C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatattttatattat
tgtggctattgagaaggtgttgtttccctaatttctttctcagcctgttt
attctttgtgtagagaaggccattgacttgtttgagtaattttatatcca
gctactcacgagctgtttatcaggttaggagttctcttgttggatttagg
tcactttaatattacctattcatatcatctgccaaattattggacttcct
ttccattgtatcccccatggatcttccttctggtgtgtgcga

gaattctttattaataaattttcaatggcaatcctattaaatatcgtaat
aaactgccaagtatgttcacctatatttaggcaaaaattaccaatctttt
ggttacttaaaatgggaatgagcttgtgatatttatgtgtatgtcaattt
tgttaactactggacaatcacttaccactgtggcagaaatgggtaagata
ggaaattagatatcatttaattagatagtaaagccatttaaaaggtttca
agtattctatttattttcatattatgttctattgattatggcagccatta
gctatatatggattttggacaataaaatgtggctaatgtgaatatggaaa
caactttatttttatcttattttagctagtctaaatttaaaactattaat
aaattcagttgctgaaaacttttaaatatgaaatttaagtacagattatg
tatctttagtgacatttatgtacagataaggaaatggttaattctaaaag
tcattgtatctctaagaattagaacactttattttgttaacagtgtatta
tgagagttatgtgatgaaatagtaccctgtttatgctgctctatgaaaga
tgttcaatatgcattctgagtatgaacaatagaaaatgtaaaatgtgtgt
gacttcagtgtatttgtaaagggtgtaacagtctaacatctggggcaatt
attttcactttaattttactgaatatttactttattgtgtggaaaataag
tgaaatattcagaaggagaaaaatgatataagtttgggtagatgttagag
agtttggatttattttaaattagtgaggccttcaattatttcattggtta
aaggggcattttttttctgacatatagaacaatttatcagtcaagaaaaa
cagtttcattaatatttttatatccattgagaatataatttgaaagtgtc
tgaagatctcctactcaatgaatatctgagagcagtagccaccttgttct
tagctaggtttactgctgtgaaggaccaccatgaccaagcagtccttatt
aaaaacaacattaattgggtctggctttcacagtcagaggttcagttcac
tcatccatcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56458873_56460148
seq2: B6Ng01-260C18.g_63_1175 (reverse)

seq1  CCTTGATGGAATAGGTGTGACCTGGTTGGAGTAGGTGTGTCACTGTGGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCGACATAAGATCCTCACCCTAGTTGCCTGGAAGTCAATCTTCCACTAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCCTGAAGACATAGAACTCTCAGATCCCCCTGCACTATGCCTGCCCGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATACTGCCATGATCCCACCTTGAT-GATGA-TGGACTGAACCTCTGAACC  198
                       ||||||| ||||| || |||||||||||||   
seq2  -----------------CCTTGATGGATGAGTGAACTGAACCTCTGACTG  33

seq1  TGTAAGCCAGACCCAATTAAATGTTGTTTTT-ATAAGACTTGCCTTGGTC  247
      || ||||||||||||||| |||||||||||| |||||   || |||||||
seq2  TGAAAGCCAGACCCAATT-AATGTTGTTTTTAATAAGGACTG-CTTGGTC  81

seq1  ATGGTGTCTTTTCACAGCAGTAAGACCCTAGCTAAG-ACAAGGT-GCTAC  295
      ||||||    ||||||||||||  | |||||||||| ||||||| |||||
seq2  ATGGTGGTCCTTCACAGCAGTA--AACCTAGCTAAGAACAAGGTGGCTAC  129

seq1  TGCTCTCAGATATTCATTGAGTAGGAGATCTTCAGACACTTTC-AATTAT  344
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTCTCAGATATTCATTGAGTAGGAGATCTTCAGACACTTTCAAATTAT  179

seq1  ATTCTCAATGGATATAAAAATATTAATG-AACTGTTTTTTCTTGACTGAT  393
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  ATTCTCAATGGATATAAAAATATTAATGAAACTG-TTTTTCTTGACTGAT  228

seq1  -AATTGTTCTATATGTCAG-AAAAAAATGCCCCTTTAACCAATGAAATAA  441
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATTGTTCTATATGTCAGAAAAAAAATGCCCCTTTAACCAATGAAATAA  278

seq1  TTGAAGGCCTCACTAATTTAAAATAAATCCAAACTCTCTAACATCTACCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGCCTCACTAATTTAAAATAAATCCAAACTCTCTAACATCTACCC  328

seq1  AAACTTATATCATTTTTCTCCTTCTGAATATTTCACTTATTTTCCACACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATATCATTTTTCTCCTTCTGAATATTTCACTTATTTTCCACACA  378

seq1  ATAAAGTAAATATTCAGTAAAATTAAAGTGAAAATAATTGCCCCAGATGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAAATATTCAGTAAAATTAAAGTGAAAATAATTGCCCCAGATGT  428

seq1  TAGACTGTTACACCCTTTACAAATACACTGAAGTCACACACATTTTACAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTTACACCCTTTACAAATACACTGAAGTCACACACATTTTACAT  478

seq1  TTTCTATTGTTCATACTCAGAATGCATATTGAACATCTTTCATAGAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGTTCATACTCAGAATGCATATTGAACATCTTTCATAGAGCAG  528

seq1  CATAAACAGGGTACTATTTCATCACATAACTCTCATAATACACTGTTAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAGGGTACTATTTCATCACATAACTCTCATAATACACTGTTAAC  578

seq1  AAAATAAAGTGTTCTAATTCTTAGAGATACAATGACTTTTAGAATTAACC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGTGTTCTAATTCTTAGAGATACAATGACTTTTAGAATTAACC  628

seq1  ATTTCCTTATCTGTACATAAATGTCACTAAAGATACATAATCTGTACTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTATCTGTACATAAATGTCACTAAAGATACATAATCTGTACTTA  678

seq1  AATTTCATATTTAAAAGTTTTCAGCAACTGAATTTATTAATAGTTTTAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATATTTAAAAGTTTTCAGCAACTGAATTTATTAATAGTTTTAAA  728

seq1  TTTAGACTAGCTAAAATAAGATAAAAATAAAGTTGTTTCCATATTCACAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTAGCTAAAATAAGATAAAAATAAAGTTGTTTCCATATTCACAT  778

seq1  TAGCCACATTTTATTGTCCAAAATCCATATATAGCTAATGGCTGCCATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATTTTATTGTCCAAAATCCATATATAGCTAATGGCTGCCATAA  828

seq1  TCAATAGAACATAATATGAAAATAAATAGAATACTTGAAACCTTTTAAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAACATAATATGAAAATAAATAGAATACTTGAAACCTTTTAAAT  878

seq1  GGCTTTACTATCTAATTAAATGATATCTAATTTCCTATCTTACCCATTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACTATCTAATTAAATGATATCTAATTTCCTATCTTACCCATTTC  928

seq1  TGCCACAGTGGTAAGTGATTGTCCAGTAGTTAACAAAATTGACATACACA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGTGGTAAGTGATTGTCCAGTAGTTAACAAAATTGACATACACA  978

seq1  TAAATATCACAAGCTCATTCCCATTTTAAGTAACCAAAAGATTGGTAATT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCACAAGCTCATTCCCATTTTAAGTAACCAAAAGATTGGTAATT  1028

seq1  TTTGCCTAAATATAGGTGAACATACTTGGCAGTTTATTACGATATTTAAT  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTAAATATAGGTGAACATACTTGGCAGTTTATTACGATATTTAAT  1078

seq1  AGGATTGCCATTGAAAATTTATTAATAAAGAATTC  1276
      |||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCATTGAAAATTTATTAATAAAGAATTC  1113


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