BAC Information

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BAC

Clone NameB6Ng01-260L15
Chromosome2 (Build37)
Map Location 45,343,074 - 45,445,443
singlet/doubletdoublet
Overlap genenone
Upstream geneGtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260L15.bB6Ng01-260L15.g
ACCGA065577GA065578
length1,1361,086
definitionB6Ng01-260L15.b B6Ng01-260L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,343,074 - 45,344,196)(45,444,351 - 45,445,443)
sequence
gaattctgttctttggagatagctttttctcaaagttctgatggcccctt
caggtgcctatgcaaaattaacattagaacatgtcaaaatgaagataaaa
aggatgtgttcagtgttgacatttcatgtcagtcatttgtatttcttgac
tttctgtctccatttttttcctgcaaacaaaaatatacataatttgaagt
gtatttaatgtctttttcctgaagtgataacatgtaatttatccatgtaa
tttgtccatcttagtttcttttttaatcaaaatataattattctcttagc
ctctttccttctttcctgagtaacatctcctgtgtttacttgcttgctga
cttcttcttctttattactgttgcacatatataaaatgcataactacaca
actacaaaccactcatttcattgagtgttgcttacatgtttataatttct
tgggctgtccacttgatactgttgctcatccatggggaagaccatttctc
ccattcttagcgattttagttgtttgtcattctttgtttaggggtggatc
caccatgagttttccgtccttcacattagtatgtctactggtgttatctc
tgttcaggacttattttgtcacctatactggtggtgtataatgtgtgaag
tttcgctgtcatttcttggagaaagcagaacagttatcctggtcctctga
atctggcaatttttctatttttctaccattttctgagtcttagaggcaag
agttgttcagtaaatatatccactgcagctgagacactagttcttagtaa
tatcagtaaaacagtaacataatagctactcattgggtcatcgtagcaca
tcagatttttttcccatctggtctaattgttcactcttgcctgtctaaac
actatctggtgaagtgctgctccaggcttatgatttgtgcacttgctact
cagactttcctgtggcttacctatgactcttcactctgattcctaaattc
tcccttcagtatactaagctatcctcatccagcaagtctgttttggatcc
tgtgttttctctgcctcccaatccctagaatattaattattctgccaaat
ttattaataattatatttattaattatttaatttat
gaattcaccgaatccttcagagacttgatgtgataggatgaggagataac
caggagacccacccgtcctctcagaggagaagggaagtgggatgggttga
ctgtaggatggtggtgactgggttggggacaataggcaggatgtgaaatg
aataaattaaaaattttaaaatgaaatgaataatcctcccccaaagaata
aagatctagaatttttaatccaaagggaagaagacaaggaaatattttcc
aacattatattccaaaggctgattatctgcaattgcacaaaataagaggc
tccgtatctaataagtgtaatgaattcacagcttactttgatagtaatgt
agttgtagcatgaatcaattcattctaacaaatcttaatgtttcagcata
ttcttaaactgttcaagctcataattcccatcttgaaaaaaaaaaagatt
tcttactaaagatctctttctgcagaacttaaggttacacatatacttct
tatcctataccccttccttgggcatttttcctctgtttaaggagtttata
aatctacccaccttatcccatttactgtgatactgaaactactaatgaag
tgtggaggggagccattaacgcccccgcttctttaaaggtctataccaga
atgcccttgtgtgatctcaggttctcagacataggtgcttaaagcttaca
acaagaggtatggaatatccattcagcctggcattacgttttataaccac
ctccaatatgaatttacttctcagaaatccaaatgatcctggccaccaaa
gtttactgcagacataatcatctgatatcatgtatctataccaaccaaaa
atatcctatttctaaatgagaatttttttttcacttaaatattcctgggt
tattctagttatgtttctacctttacctgtgtttgagtatgcttattcta
aaacttatttgaatgatttgcaagactaaaaagcaacgtgtcatcggcag
agtagagcctgcctcataaatctgctgcctcagagtcgattcgaaagacc
ccagttgaggttcactctaccaaccagtgagtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45343074_45344196
seq2: B6Ng01-260L15.b_48_1183

seq1  GAATTCTGTTCTTTGGAGATAGCTTTTTCTCAAAGTTCTGATGGCCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTTTGGAGATAGCTTTTTCTCAAAGTTCTGATGGCCCCTT  50

seq1  CAGGTGCCTATGCAAAATTAACATTAGAACATGTCAAAATGAAGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTATGCAAAATTAACATTAGAACATGTCAAAATGAAGATAAAA  100

seq1  AGGATGTGTTCAGTGTTGACATTTCATGTCAGTCATTTGTATTTCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGTTCAGTGTTGACATTTCATGTCAGTCATTTGTATTTCTTGAC  150

seq1  TTTCTGTCTCCATTTTTTTCCTGCAAACAAAAATATACATAATTTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCCATTTTTTTCCTGCAAACAAAAATATACATAATTTGAAGT  200

seq1  GTATTTAATGTCTTTTTCCTGAAGTGATAACATGTAATTTATCCATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATGTCTTTTTCCTGAAGTGATAACATGTAATTTATCCATGTAA  250

seq1  TTTGTCCATCTTAGTTTCTTTTTTAATCAAAATATAATTATTCTCTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCATCTTAGTTTCTTTTTTAATCAAAATATAATTATTCTCTTAGC  300

seq1  CTCTTTCCTTCTTTCCTGAGTAACATCTCCTGTGTTTACTTGCTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTCTTTCCTGAGTAACATCTCCTGTGTTTACTTGCTTGCTGA  350

seq1  CTTCTTCTTCTTTATTACTGTTGCACATATATAAAATGCATAACTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTTATTACTGTTGCACATATATAAAATGCATAACTACACA  400

seq1  ACTACAAACCACTCATTTCATTGAGTGTTGCTTACATGTTTATAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAACCACTCATTTCATTGAGTGTTGCTTACATGTTTATAATTTCT  450

seq1  TGGGCTGTCCACTTGATACTGTTGCTCATCCATGGGGAAGACCATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTCCACTTGATACTGTTGCTCATCCATGGGGAAGACCATTTCTC  500

seq1  CCATTCTTAGCGATTTTAGTTGTTTGTCATTCTTTGTTTAGGGGTGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTAGCGATTTTAGTTGTTTGTCATTCTTTGTTTAGGGGTGGATC  550

seq1  CACCATGAGTTTTCCGTCCTTCACATTAGTATGTCTACTGGTGTTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGTTTTCCGTCCTTCACATTAGTATGTCTACTGGTGTTATCTC  600

seq1  TGTTCAGGACTTATTTTGTCACCTATACTGGTGGTGTATAATGTGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGACTTATTTTGTCACCTATACTGGTGGTGTATAATGTGTGAAG  650

seq1  TTTCGCTGTCATTTCTTGGAGAAAGCAGAACAGTTATCCTGGTCCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCTGTCATTTCTTGGAGAAAGCAGAACAGTTATCCTGGTCCTCTGA  700

seq1  ATCTGGCAATTTTTCTATTTTTCTACCATTTTCTGAGTCTTAGAGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCAATTTTTCTATTTTTCTACCATTTTCTGAGTCTTAGAGGCAAG  750

seq1  AGTTGTTCAGTAAATATATCCACTGCAGCTGAGACACTAGTTCTTAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGTAAATATATCCACTGCAGCTGAGACACTAGTTCTTAGTAA  800

seq1  TATCAGTAAAACAGTAACATAATAGCTACTCATTGGGTCATCGTAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAAAACAGTAACATAATAGCTACTCATTGGGTCATCGTAGCACA  850

seq1  TCAGATTTTTTTCCCATCTGGTCTAATTGTTCACTCTTGCCTGTCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTTTTCCCATCTGGTCTAATTGTTCACTCTTGCCTGTCTAAAC  900

seq1  ACTATCTGGTGAAGTGCTGCTCCAGGCTTATGATTTGTGCACTTGCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGGTGAAGTGCTGCTCCAGGCTTATGATTTGTGCACTTGCTACT  950

seq1  CAGACTTTCCTGTGGCTTACCTATGACTCTTCACTCTGATTCCTAAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTCCTGTGGCTTACCTATGACTCTTCACTCTGATTCCTAAATTC  1000

seq1  TCCCTTCAGTATACTAAGCTATCCTCATCCAGCAAGTCTGTTTTGGATCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAGTATACTAAGCTATCCTCATCCAGCAAGTCTGTTTTGGATCC  1050

seq1  TGTGTTTTCTCTGCCTCCCAATTCCCTAG-ATATTAATTA-TCTGCCATA  1098
      ||||||||||||||||||||| ||||||| |||||||||| ||||||| |
seq2  TGTGTTTTCTCTGCCTCCCAA-TCCCTAGAATATTAATTATTCTGCCAAA  1099

seq1  TTTATT--------TATTTAT---TTATTT-ATTTAT  1123
      ||||||        |||||||   |||||| ||||||
seq2  TTTATTAATAATTATATTTATTAATTATTTAATTTAT  1136

seq1: chr2_45444351_45445443
seq2: B6Ng01-260L15.g_64_1149 (reverse)

seq1  AGAGACTCACTGTGTTGCT-GAGTTGACCTCTAACTCGGGGTCTTTCTGA  49
      |||||||||||| |||| | ||||  ||||| |||| |||||||||| ||
seq2  AGAGACTCACTG-GTTGGTAGAGTGAACCTC-AACT-GGGGTCTTTC-GA  46

seq1  ATCCAACTCTTGAGCAGCAGATTATAGAGGCAGGCTCTACTCTGCCCAAT  99
      || | |||||   ||||||||||   |||||||||||||||||| || ||
seq2  AT-CGACTCTGAGGCAGCAGATTTATGAGGCAGGCTCTACTCTG-CCGAT  94

seq1  GACACCGTTGCTTTTTAGTCTTTGCAAATCCATTCAAATAAGTTTTAGAA  149
      |||| ||||||||||||||| |||||||| ||||||||||||||||||||
seq2  GACA-CGTTGCTTTTTAGTC-TTGCAAAT-CATTCAAATAAGTTTTAGAA  141

seq1  TAAGCATACTCAAACACAAGGTAAAGGTAGAAACATAACTAGAATAA-CC  198
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TAAGCATACTCAAACAC-AGGTAAAGGTAGAAACATAACTAGAATAACCC  190

seq1  AGGAATATTTAAGTG-AAAAAAAATTCTCATTTAGAAATAGGATATTTTT  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGAATATTTAAGTGAAAAAAAAATTCTCATTTAGAAATAGGATATTTTT  240

seq1  GGTTGGTATAGATACATGATATCAGATGATTATGTCTGCAGTAAACTTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTATAGATACATGATATCAGATGATTATGTCTGCAGTAAACTTTG  290

seq1  GTGGCCAGGATCATTTGGATTTCTGAGAAGTAAATTCATATTGGAGGTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGGATCATTTGGATTTCTGAGAAGTAAATTCATATTGGAGGTGG  340

seq1  TTATAAAACGTAATGCCAGGCTGAATGGATATTCCATACCTCTTGTTGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACGTAATGCCAGGCTGAATGGATATTCCATACCTCTTGTTGTA  390

seq1  AGCTTTAAGCACCTATGTCTGAGAACCTGAGATCACACAAGGGCATTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAGCACCTATGTCTGAGAACCTGAGATCACACAAGGGCATTCTG  440

seq1  GTATAGACCTTTAAAGAAGCGGGGGCGTTAATGGCTCCCCTCCACACTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGACCTTTAAAGAAGCGGGGGCGTTAATGGCTCCCCTCCACACTTC  490

seq1  ATTAGTAGTTTCAGTATCACAGTAAATGGGATAAGGTGGGTAGATTTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGTTTCAGTATCACAGTAAATGGGATAAGGTGGGTAGATTTATA  540

seq1  AACTCCTTAAACAGAGGAAAAATGCCCAAGGAAGGGGTATAGGATAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTAAACAGAGGAAAAATGCCCAAGGAAGGGGTATAGGATAAGAA  590

seq1  GTATATGTGTAACCTTAAGTTCTGCAGAAAGAGATCTTTAGTAAGAAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTGTAACCTTAAGTTCTGCAGAAAGAGATCTTTAGTAAGAAATC  640

seq1  TTTTTTTTTTTCAAGATGGGAATTATGAGCTTGAACAGTTTAAGAATATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCAAGATGGGAATTATGAGCTTGAACAGTTTAAGAATATG  690

seq1  CTGAAACATTAAGATTTGTTAGAATGAATTGATTCATGCTACAACTACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATTAAGATTTGTTAGAATGAATTGATTCATGCTACAACTACAT  740

seq1  TACTATCAAAGTAAGCTGTGAATTCATTACACTTATTAGATACGGAGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCAAAGTAAGCTGTGAATTCATTACACTTATTAGATACGGAGCCT  790

seq1  CTTATTTTGTGCAATTGCAGATAATCAGCCTTTGGAATATAATGTTGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGTGCAATTGCAGATAATCAGCCTTTGGAATATAATGTTGGAA  840

seq1  AATATTTCCTTGTCTTCTTCCCTTTGGATTAAAAATTCTAGATCTTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCCTTGTCTTCTTCCCTTTGGATTAAAAATTCTAGATCTTTATT  890

seq1  CTTTGGGGGAGGATTATTCATTTCATTTTAAAATTTTTAATTTATTCATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGGAGGATTATTCATTTCATTTTAAAATTTTTAATTTATTCATT  940

seq1  TCACATCCTGCCTATTGTCCCCAACCCAGTCACCACCATCCTACAGTCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCTGCCTATTGTCCCCAACCCAGTCACCACCATCCTACAGTCAA  990

seq1  CCCATCCCACTTCCCTTCTCCTCTGAGAGGACGGGTGGGTCTCCTGGTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCACTTCCCTTCTCCTCTGAGAGGACGGGTGGGTCTCCTGGTTA  1040

seq1  TCTCCTCATCCTATCACATCAAGTCTCTGAAGGATTCGGTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATCCTATCACATCAAGTCTCTGAAGGATTCGGTGAATTC  1086