BAC Information

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BAC

Clone NameB6Ng01-262D20
Chromosome2 (Build37)
Map Location 104,738,277 - 104,866,270
singlet/doubletdoublet
Overlap geneCcdc73, Ga17, 2210415I11Rik
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneLOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D20.bB6Ng01-262D20.g
ACCGA066707GA066708
length1,045941
definitionB6Ng01-262D20.b B6Ng01-262D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,738,277 - 104,739,001)(104,865,331 - 104,866,270)
sequence
gaattcacgacatttggaagagcagttggtgctcttaatcgctgagccat
ctctctagcccccttattatgctatcttaatacatctggaatagtatctc
tttgtggttttggtttctatcatcttaacgagtagtgatagtaaacgtat
ttcatgttggtactggtcacgctcagcacacacaaatgtagacaagtact
ggcaagactagaagagggcgggcattttggagaaaatttgattctaatcc
cttggctgttttgcccttttattgtttaatcatacgaagcaactatattg
tatattcaagatgatagtttttagtgaaatatatgctttgcaaatttttc
tcactttgtagattctctttattttattgataatgttctttaaagtatac
ccattttaaaatttgatgactccagtctgttcattttcttagaggaaaag
ttcttagccttttgtaattcagtattttattaatttcttttatgattact
gtgaccaaatatcttacaaggaacaaattaagggagggagaatttatttt
ggctttcggtttgagaagattttgtccattgtggtggggaaggcatgggg
cagctagtttccatatgtggtggcaggagcttgcctccgttattcatttt
actgacattgaccagaaagcagagttgggctgtgatccttaagaccatcc
cacaatgacttttgtcctgcagctaggctctacctcctaaaggttccata
acttcatccccaaagtatcacagctgggaaccaagctttacaacacaaga
gcctgcaggtaacatttcagactcaaatcataaacatatgctgtcagtgg
tgacaaaagcagacgtcttttcatagactccctctaaggcagaagttcct
gccttattcatagcttattgagaatttatcatgagaagatagtgtacttt
gtcacactttttcttacatttattaaaaacaatcctattgtttattgtct
tttcttatcccatcaatatggtttattacattaaatgatttttaa
gaattcttttttttttttttcttttttaaatctgcattggcaattttaaa
tgtctcacttgtgcagaactgaaatatatttttaaaggcacagaaggaag
gaaaggcagctatctgagcatgaagtcacaggaaagggtgctggagagaa
accgtgggctgctctgcgtagctgtaggaaataaacaatgcagtgctgag
tgtgagctgacgctactatggtccatgtgaaggcatcgcagatgccttgt
cacttgtcagcagagtgcagatgccgtagtgtagagtcgattacactgtg
gactgaatgcccaggaggcgctcgctgccagtgactgggcgtggcaggcg
cagcaggactcactcaggacgtggacagacatttgaagcagtcaagcaca
taccttttcccactggaaatcttttatggcgctttctctgcaagtcaaca
tctgcctgcctaccaagaattataatttttaaaaaatggaatctggtcta
attatgatttgtgaataaaaaattacaaaaataaaagcagagacttctgt
ccttgaaaaaagatagaaaactatattttcctgtaataagagaatcatga
atacttcacctttatgtcttttcaaatgttatcccctcttttttttatat
tctgccataattaacattgggagatgtatacaatatggctatttcagctt
agtaaaagaatatactattatttgctgggaaaaaatgaatgagaaaaggc
tagtttactcataataagatcgatggaaggaagggtaaataaaaaccgag
atggacttttactctaccacctttgagaccccagtttggctggcctggat
cttgctatgtagaccaggcttggcctcagtagctgagaattctacatctg
ggtccacagcaggtagggaaagggagaggagggagggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104738277_104739001
seq2: B6Ng01-262D20.b_48_772

seq1  GAATTCACGACATTTGGAAGAGCAGTTGGTGCTCTTAATCGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGACATTTGGAAGAGCAGTTGGTGCTCTTAATCGCTGAGCCAT  50

seq1  CTCTCTAGCCCCCTTATTATGCTATCTTAATACATCTGGAATAGTATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCCCCTTATTATGCTATCTTAATACATCTGGAATAGTATCTC  100

seq1  TTTGTGGTTTTGGTTTCTATCATCTTAACGAGTAGTGATAGTAAACGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTTTGGTTTCTATCATCTTAACGAGTAGTGATAGTAAACGTAT  150

seq1  TTCATGTTGGTACTGGTCACGCTCAGCACACACAAATGTAGACAAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTGGTACTGGTCACGCTCAGCACACACAAATGTAGACAAGTACT  200

seq1  GGCAAGACTAGAAGAGGGCGGGCATTTTGGAGAAAATTTGATTCTAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACTAGAAGAGGGCGGGCATTTTGGAGAAAATTTGATTCTAATCC  250

seq1  CTTGGCTGTTTTGCCCTTTTATTGTTTAATCATACGAAGCAACTATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTTTTGCCCTTTTATTGTTTAATCATACGAAGCAACTATATTG  300

seq1  TATATTCAAGATGATAGTTTTTAGTGAAATATATGCTTTGCAAATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAAGATGATAGTTTTTAGTGAAATATATGCTTTGCAAATTTTTC  350

seq1  TCACTTTGTAGATTCTCTTTATTTTATTGATAATGTTCTTTAAAGTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGATTCTCTTTATTTTATTGATAATGTTCTTTAAAGTATAC  400

seq1  CCATTTTAAAATTTGATGACTCCAGTCTGTTCATTTTCTTAGAGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAAAATTTGATGACTCCAGTCTGTTCATTTTCTTAGAGGAAAAG  450

seq1  TTCTTAGCCTTTTGTAATTCAGTATTTTATTAATTTCTTTTATGATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCCTTTTGTAATTCAGTATTTTATTAATTTCTTTTATGATTACT  500

seq1  GTGACCAAATATCTTACAAGGAACAAATTAAGGGAGGGAGAATTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAATATCTTACAAGGAACAAATTAAGGGAGGGAGAATTTATTTT  550

seq1  GGCTTTCGGTTTGAGAAGATTTTGTCCATTGTGGTGGGGAAGGCATGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCGGTTTGAGAAGATTTTGTCCATTGTGGTGGGGAAGGCATGGGG  600

seq1  CAGCTAGTTTCCATATGTGGTGGCAGGAGCTTGCCTCCGTTATTCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTTTCCATATGTGGTGGCAGGAGCTTGCCTCCGTTATTCATTTT  650

seq1  ACTGACATTGACCAGAAAGCAGAGTTGGGCTGTGATCCTTAAGACCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTGACCAGAAAGCAGAGTTGGGCTGTGATCCTTAAGACCATCC  700

seq1  CACAATGACTTTTGTCCTGCAGCTA  725
      |||||||||||||||||||||||||
seq2  CACAATGACTTTTGTCCTGCAGCTA  725

seq1: chr2_104865331_104866270
seq2: B6Ng01-262D20.g_67_1007 (reverse)

seq1  TTTTCCCTCCCTCCTCTCCC-TTCCCTACCTGCTGTGGACCCAGATGTAG  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTCCCTCCCTCCTCTCCCTTTCCCTACCTGCTGTGGACCCAGATGTAG  50

seq1  AATTCTCAGCTACTGAGGCCAAGCCTGGTCTACATAGCAAGATCCAGGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGCTACTGAGGCCAAGCCTGGTCTACATAGCAAGATCCAGGCC  100

seq1  AGCCAAACTGGGGTCTCAAAGGTGGTAGAGTAAAAGTCCATCTCGGTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTGGGGTCTCAAAGGTGGTAGAGTAAAAGTCCATCTCGGTTTT  150

seq1  TATTTACCCTTCCTTCCATCGATCTTATTATGAGTAAACTAGCCTTTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCCTTCCTTCCATCGATCTTATTATGAGTAAACTAGCCTTTTCT  200

seq1  CATTCATTTTTTCCCAGCAAATAATAGTATATTCTTTTACTAAGCTGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTTTCCCAGCAAATAATAGTATATTCTTTTACTAAGCTGAAA  250

seq1  TAGCCATATTGTATACATCTCCCAATGTTAATTATGGCAGAATATAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATTGTATACATCTCCCAATGTTAATTATGGCAGAATATAAAAA  300

seq1  AAAGAGGGGATAACATTTGAAAAGACATAAAGGTGAAGTATTCATGATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGATAACATTTGAAAAGACATAAAGGTGAAGTATTCATGATTC  350

seq1  TCTTATTACAGGAAAATATAGTTTTCTATCTTTTTTCAAGGACAGAAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTACAGGAAAATATAGTTTTCTATCTTTTTTCAAGGACAGAAGTC  400

seq1  TCTGCTTTTATTTTTGTAATTTTTTATTCACAAATCATAATTAGACCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTATTTTTGTAATTTTTTATTCACAAATCATAATTAGACCAGA  450

seq1  TTCCATTTTTTAAAAATTATAATTCTTGGTAGGCAGGCAGATGTTGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTTTAAAAATTATAATTCTTGGTAGGCAGGCAGATGTTGACTT  500

seq1  GCAGAGAAAGCGCCATAAAAGATTTCCAGTGGGAAAAGGTATGTGCTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGCGCCATAAAAGATTTCCAGTGGGAAAAGGTATGTGCTTGA  550

seq1  CTGCTTCAAATGTCTGTCCACGTCCTGAGTGAGTCCTGCTGCGCCTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAAATGTCTGTCCACGTCCTGAGTGAGTCCTGCTGCGCCTGCCA  600

seq1  CGCCCAGTCACTGGCAGCGAGCGCCTCCTGGGCATTCAGTCCACAGTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGTCACTGGCAGCGAGCGCCTCCTGGGCATTCAGTCCACAGTGTA  650

seq1  ATCGACTCTACACTACGGCATCTGCACTCTGCTGACAAGTGACAAGGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTCTACACTACGGCATCTGCACTCTGCTGACAAGTGACAAGGCAT  700

seq1  CTGCGATGCCTTCACATGGACCATAGTAGCGTCAGCTCACACTCAGCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATGCCTTCACATGGACCATAGTAGCGTCAGCTCACACTCAGCACT  750

seq1  GCATTGTTTATTTCCTACAGCTACGCAGAGCAGCCCACGGTTTCTCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTTATTTCCTACAGCTACGCAGAGCAGCCCACGGTTTCTCTCCA  800

seq1  GCACCCTTTCCTGTGACTTCATGCTCAGATAGCTGCCTTTCCTTCCTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTTTCCTGTGACTTCATGCTCAGATAGCTGCCTTTCCTTCCTTCT  850

seq1  GTGCCTTTAAAAATATATTTCAGTTCTGCACAAGTGAGACATTTAAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTAAAAATATATTTCAGTTCTGCACAAGTGAGACATTTAAAATT  900

seq1  GCCAATGCAGATTTAAAAAAGAAAAAAAAAAAAAAGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCAGATTTAAAAAAGAAAAAAAAAAAAAAGAATTC  941