BAC Information

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BAC

Clone NameB6Ng01-262J05
Chromosome2 (Build37)
Map Location 100,936,134 - 100,937,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J05.bB6Ng01-262J05.g
ACCGA066955GA066956
length1,2241,001
definitionB6Ng01-262J05.b B6Ng01-262J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcatctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctatt
ttattcaggaattatttccctgtgcccatatctttgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgatcttagtacaaggagagaggaatgggtcgattcgc
attcttctacatgataacaaccagttgtgccagcaacatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagttttaatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtacttt
tatccttgagaagagctttttctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagtatgggagatctttccatctt
ctgagatctttctttaatttctttctttcagggactggaagtttttatca
tacagatctttcactcccttagttagagtcacgccgagatattttatatt
atttgtgactattgagaaggggtgttgtttccctaattcttttcttcagc
ctggtttatttcttttgtgtaagagaaaggcctatctgaacttgtgctgg
agcttatttttatattccagcttaccttgattgaagcttgttcatcaggc
taggagcttctctgggtgaaattttaagggtcataatcattctggcaaag
ggtgaatttggaccttcatcctttcccattgtatccaatgagattcctca
tttgcttggtctcaatgtactacg
gaattcaactaacctcaaataaaattcactgaccccccacccctgaatgg
ggcttgggtagtgacctaggctgaagcagtatggatttgaaactgactag
atttaaggggcctacagagaacagcagagaggcatctatgcctgagagcc
tttctgtgtttgcttccctgtatccatcgctccccaccctgcctcctcca
tctccaaacagggacagaaacgaatcggatcttttcacactcagtttcac
cctgtgaataaataattgggagacaaaggtacaaaggactccggaccagg
taattcatttctataaagtgagaaatatcaccttttgatacttgaagaag
atataaagatatagtgttaaaataagtcttacagtatactcatattctgt
ctaatgcgggctccatgggaattttgggattaaatcctggtttgacaagc
tgcctcttataagaaggtgtagtacctaaagatgggaaatttcacctgcg
gttcagaaccacatagggaatattagtcactgactccaagtagagagagc
agtgatattaacctgctatgagcaggtattaattaatagaagtctgtggc
tctagataaagagcataacagatagatattataataggtattaattaaat
aaatgtctgtggctcctggtagagcacaacagacaggatggctgctctag
gcagagagcttattaattatgagaaatttcacgttcagaactagatagga
aatattagtcactgacttcaagtagagagagcagtggtaatcacctgcta
tgaacaggtattaattaatagaggtctgtggctccaggtagagggcataa
aagatagatagtataattggtgttaattaaataaatgtctgtggctcagg
tagagagcactctaataagtcttacagaatactcatattgtctaacggtg
ggcttcacgggaattttgggtttaaatcctgggtttgacaagctgcttct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100936134_100937006
seq2: B6Ng01-262J05.g_67_939

seq1  GAATTCAACTAACCTCAAATAAAATTCACTGACCCCCCACCCCTGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAACCTCAAATAAAATTCACTGACCCCCCACCCCTGAATGG  50

seq1  GGCTTGGGTAGTGACCTAGGCTGAAGCAGTATGGATTTGAAACTGACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGTAGTGACCTAGGCTGAAGCAGTATGGATTTGAAACTGACTAG  100

seq1  ATTTAAGGGGCCTACAGAGAACAGCAGAGAGGCATCTATGCCTGAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGGGCCTACAGAGAACAGCAGAGAGGCATCTATGCCTGAGAGCC  150

seq1  TTTCTGTGTTTGCTTCCCTGTATCCATCGCTCCCCACCCTGCCTCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTTGCTTCCCTGTATCCATCGCTCCCCACCCTGCCTCCTCCA  200

seq1  TCTCCAAACAGGGACAGAAACGAATCGGATCTTTTCACACTCAGTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAACAGGGACAGAAACGAATCGGATCTTTTCACACTCAGTTTCAC  250

seq1  CCTGTGAATAAATAATTGGGAGACAAAGGTACAAAGGACTCCGGACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATAAATAATTGGGAGACAAAGGTACAAAGGACTCCGGACCAGG  300

seq1  TAATTCATTTCTATAAAGTGAGAAATATCACCTTTTGATACTTGAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTTCTATAAAGTGAGAAATATCACCTTTTGATACTTGAAGAAG  350

seq1  ATATAAAGATATAGTGTTAAAATAAGTCTTACAGTATACTCATATTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGATATAGTGTTAAAATAAGTCTTACAGTATACTCATATTCTGT  400

seq1  CTAATGCGGGCTCCATGGGAATTTTGGGATTAAATCCTGGTTTGACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCGGGCTCCATGGGAATTTTGGGATTAAATCCTGGTTTGACAAGC  450

seq1  TGCCTCTTATAAGAAGGTGTAGTACCTAAAGATGGGAAATTTCACCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTATAAGAAGGTGTAGTACCTAAAGATGGGAAATTTCACCTGCG  500

seq1  GTTCAGAACCACATAGGGAATATTAGTCACTGACTCCAAGTAGAGAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACCACATAGGGAATATTAGTCACTGACTCCAAGTAGAGAGAGC  550

seq1  AGTGATATTAACCTGCTATGAGCAGGTATTAATTAATAGAAGTCTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTAACCTGCTATGAGCAGGTATTAATTAATAGAAGTCTGTGGC  600

seq1  TCTAGATAAAGAGCATAACAGATAGATATTATAATAGGTATTAATTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATAAAGAGCATAACAGATAGATATTATAATAGGTATTAATTAAAT  650

seq1  AAATGTCTGTGGCTCCTGGTAGAGCACAACAGACAGGATGGCTGCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGTGGCTCCTGGTAGAGCACAACAGACAGGATGGCTGCTCTAG  700

seq1  GCAGAGAGCTTATTAATTATGAGAAATTTCACGTTCAGAACTAGATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGCTTATTAATTATGAGAAATTTCACGTTCAGAACTAGATAGGA  750

seq1  AATATTAGTCACTGACTTCAAGTAGAGAGAGCAGTGGTAATCACCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTCACTGACTTCAAGTAGAGAGAGCAGTGGTAATCACCTGCTA  800

seq1  TGAACAGGTATTAATTAATAGAGGTCTGTGGCTCCAGGTAGAGGGCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGTATTAATTAATAGAGGTCTGTGGCTCCAGGTAGAGGGCATAA  850

seq1  AAGATAGATAGTATAATTGGTGT  873
      |||||||||||||||||||||||
seq2  AAGATAGATAGTATAATTGGTGT  873