BAC Information

Click to search

BAC

Clone NameB6Ng01-264L21
Chromosome2 (Build37)
Map Location 179,030,200 - 179,031,311
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168
Downstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264L21.bB6Ng01-264L21.g
ACCGA068568GA068569
length1,1031,177
definitionB6Ng01-264L21.b B6Ng01-264L21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatggggcaaacttgaaggccgtgtctgccaattaatggtctt
tgtaagttgaatattctcttctgtggaatgtgccggattgtcatatgtac
aatatagcttcagatttgtggtaagtagaaacaaaagccttgaaatagtt
gtgagagaagccacctttacgagcctcacaaacaaaaacacttccggcca
caccaggttctgatctcccagatgtgctggtgtcaaggggtgtgggtcca
ctttgaattcatcgctgtgttccatctctagatgacaggatactctagta
accaaggccacagctaacctgaggccacctgttttagccagcaatgccac
aggatgctgggtaataagcctttccatgacatttcaaataatgggtgatg
gtcaggaggcaggcaagatgcatggaccttggctgggtaagaatggaatc
agctctctttcttgaatccaagtcttaaattctagactggttgaatcctg
ctgtggatgtcacttcacatcacttggttagtggctaccctaagcctaat
gtttggtggccacgatggaagacacagctggcagcaaagaagaccctgag
gcccccgaggctgaagttttctattttaagctgcctgcttgctgccccgt
cacagtagggcttctcctacagggagtcacgaaggttgtggatctgtcct
gggtgtgaacatcgactggacccaggtcagagcttgtttccttctgccac
atctacaagagtgcaggatagtctggcctagagccacctcctcctcagcc
ctctatctacacttgcaaaggacggaaacatcagcaccatgctgcactgc
agttggatgcagctagacacaagccaggagcaaatagtccatagtcgcca
ggaggcagggttggagcccaggaacggcgcagaccatccttacctgccaa
ggggtaaccagcgctgtgtctggcaggcaaggttgggcagggggatactc
atggggatcacaaagacctgatagagcaggtgttgaaaagagtcagccat
gcacacattagtgaaatgctctacacagtgacaattgggtgccaggacat
ggt
gaattctagagatgggaaaatctagaaatatgaacaggagccagagacaa
aagtatagctaacagaataggagacatggaagagagcatctcaggtgttg
aagagataatgaaagaaatagatacattggttaaagaaaatgttaaatca
aaaaagttcctgacacaaaacttccaggaaatctgggacactacaaaaag
tcaaaatctaagaataatagaaatagaggaaggagaagaagaatcctagg
tcaaagatcccaaactattttcaacaaaagcatggaagaaaatgttccta
accttaagaaggaaatgcctgtaagagtacaagaagcttgcagaacagta
aatagatgggaccagaaaaagaaagtccccttaccacataataatcaaaa
cactaaacaaagaaagaccattaaaagctacaagggaaaaagagcaagta
acatatgaaggaagacctgttaggattacatccaacttctcggtgaagac
tctgaaagctagaagggcctgtgtaggtgtcctgcagattctaagagacc
acggtgccatggaccagcccctgtatctatcagaccaccatggactaaag
ctggagtttgacaacaacaacaaatccagaaagcctatgaactcatggtt
attgagtaactctctactgaatgattactgggttaaggcagaaagaaaga
aagaaattaaaggcctcctagaattcaatgaaattgaatgcaaaacatac
ccatgtttatgagacaaaatgagaacagttttaagaggaaagttcatagc
actaagtgccttcggaaagaaattagagagagaccatattaacaacttaa
caacacatctgaaaactctagaacaaaaagaagcaacacacacaaaggag
tagacatagaaaataatcaatctcagtactgaaatcaataaatagaacca
agtaaaatattttttttaaaaaaaatcaatgaaacaaagagttgctgctt
tgagaaaatcaacagacggaacaaaaacccttatcaagcagacatggtgg
gtacatgtctttaatcccagcactcagtaggcagaggcagtagattctgt
gagtttagccagctggtcacagtgatccaggtacgcaagcttacacagag
aaaccgggtctttgaaaaacctaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179030200_179031311
seq2: B6Ng01-264L21.b_48_1150 (reverse)

seq1  ACCATGTCCTGGCACCCAATGGTCACTGTGTAGAGCATTTTCACTAATGT  50
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ACCATGTCCTGGCACCCAATTGTCACTGTGTAGAGCA-TTTCACTAATGT  49

seq1  GTGCATGGCTGAACCTCTTTTCACACCCTGCCTCTTCTCAGGTCCTTTGT  100
      ||||||||||||  |||||||||   |||| ||| | |||||| ||||||
seq2  GTGCATGGCTGA--CTCTTTTCAACACCTG-CTC-TATCAGGT-CTTTGT  94

seq1  GATCCCCATGAGTATCCCCCCTGCCCAACCTTTGCCTGCCAGACACAGCG  150
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  GATCCCCATGAGTAT-CCCCCTGCCCAACC-TTGCCTGCCAGACACAGCG  142

seq1  CTGGTTACCCCCTGGCAGGTAAGGATGGTCTGCGCCGTTCCCTGGGCTCC  200
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CTGGTTACCCCTTGGCAGGTAAGGATGGTCTGCGCCGTT-CCTGGGCTCC  191

seq1  CACCCTGCCTCCTGGCGACTATGGACTATTTGCTCCTGGCTTGTGTCTAG  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCCTCCTGGCGACTATGGACTATTTGCTCCTGGCTTGTGTCTAG  241

seq1  CTGCATCCAACTGCAGTGCAGCATGGTGCTGATGTTTCCGTCCTTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCAACTGCAGTGCAGCATGGTGCTGATGTTTCCGTCCTTTGCAA  291

seq1  GTGTAGATAGAGGGCTGAGGAGGAGGTGGCTCTAGGCCAGACTATCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATAGAGGGCTGAGGAGGAGGTGGCTCTAGGCCAGACTATCCTGC  341

seq1  ACTCTTGTAGATGTGGCAGAAGGAAACAAGCTCTGACCTGGGTCCAGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTAGATGTGGCAGAAGGAAACAAGCTCTGACCTGGGTCCAGTCG  391

seq1  ATGTTCACACCCAGGACAGATCCACAACCTTCGTGACTCCCTGTAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACACCCAGGACAGATCCACAACCTTCGTGACTCCCTGTAGGAGA  441

seq1  AGCCCTACTGTGACGGGGCAGCAAGCAGGCAGCTTAAAATAGAAAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACTGTGACGGGGCAGCAAGCAGGCAGCTTAAAATAGAAAACTTC  491

seq1  AGCCTCGGGGGCCTCAGGGTCTTCTTTGCTGCCAGCTGTGTCTTCCATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGGGGGCCTCAGGGTCTTCTTTGCTGCCAGCTGTGTCTTCCATCG  541

seq1  TGGCCACCAAACATTAGGCTTAGGGTAGCCACTAACCAAGTGATGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACCAAACATTAGGCTTAGGGTAGCCACTAACCAAGTGATGTGAAG  591

seq1  TGACATCCACAGCAGGATTCAACCAGTCTAGAATTTAAGACTTGGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCACAGCAGGATTCAACCAGTCTAGAATTTAAGACTTGGATTCA  641

seq1  AGAAAGAGAGCTGATTCCATTCTTACCCAGCCAAGGTCCATGCATCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGCTGATTCCATTCTTACCCAGCCAAGGTCCATGCATCTTGC  691

seq1  CTGCCTCCTGACCATCACCCATTATTTGAAATGTCATGGAAAGGCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGACCATCACCCATTATTTGAAATGTCATGGAAAGGCTTATT  741

seq1  ACCCAGCATCCTGTGGCATTGCTGGCTAAAACAGGTGGCCTCAGGTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCATCCTGTGGCATTGCTGGCTAAAACAGGTGGCCTCAGGTTAGC  791

seq1  TGTGGCCTTGGTTACTAGAGTATCCTGTCATCTAGAGATGGAACACAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTGGTTACTAGAGTATCCTGTCATCTAGAGATGGAACACAGCG  841

seq1  ATGAATTCAAAGTGGACCCACACCCCTTGACACCAGCACATCTGGGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCAAAGTGGACCCACACCCCTTGACACCAGCACATCTGGGAGAT  891

seq1  CAGAACCTGGTGTGGCCGGAAGTGTTTTTGTTTGTGAGGCTCGTAAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTGGTGTGGCCGGAAGTGTTTTTGTTTGTGAGGCTCGTAAAGGT  941

seq1  GGCTTCTCTCACAACTATTTCAAGGCTTTTGTTTCTACTTACCACAAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCTCACAACTATTTCAAGGCTTTTGTTTCTACTTACCACAAATC  991

seq1  TGAAGCTATATTGTACATATGACAATCCGGCACATTCCACAGAAGAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTATATTGTACATATGACAATCCGGCACATTCCACAGAAGAGAAT  1041

seq1  ATTCAACTTACAAAGACCATTAATTGGCAGACACGGCCTTCAAGTTTGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTTACAAAGACCATTAATTGGCAGACACGGCCTTCAAGTTTGCC  1091

seq1  CCATGGGAATTC  1112
      ||||||||||||
seq2  CCATGGGAATTC  1103