BAC Information

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BAC

Clone NameB6Ng01-266L09
Chromosome2 (Build37)
Map Location 143,990,027 - 144,118,336
singlet/doubletdoublet
Overlap geneEG433481, Snx5, 8430406I07Rik
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
Downstream geneOvol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266L09.bB6Ng01-266L09.g
ACCGA070039GA070040
length1,1681,099
definitionB6Ng01-266L09.b B6Ng01-266L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,117,164 - 144,118,336)(143,990,027 - 143,991,135)
sequence
gaattcaccatcctcctgcctctcctcctgggtgctggtattataggcct
gtcaatattaatcttaaaacaaaccaaaaccaaaccaaaccaaaaaaaac
tgctcttgcagagttgcacgaagcagaatctgatgtaagtggctggttcc
aggaaagggccaagagttcccaggtgccccagagaagatagtgggaaggc
cccgcgccagcagctaggttcccaaagttccctccaagttctcttgacac
agcccctggaaaggcctcctgtgctccctccaccccatccagaagggtag
atctgtgttaccagcgctgtccacacaattgctattttggttttcttctc
tgttctgccggcctgacatttcctcagccagttccaagcccagcgtacca
ttttagctgacgtgggtgagtgtttctcagggacagcagatggatggaat
gacaaatagaaggatggtggggacagctgagaaatgctttttcctgtgct
aggactgttggctgtgcacgtgctcctacgtagtctagacacgcagccgt
gggcgcagccgtgtgtggtaggggacagcctgtgggtgggcttgtttctg
aagcatactcattagcacgctgatgcaataaccaacccattgtattagtc
tgaggtccccaaagctgacctgataatagccatttgtttggtcccaggca
ctatcaaaggaagataaggccacaacaggtggccaaagagcaggtcattg
ctgttggcaccctttagtgactacaggaggaacatggctcaaagctggcc
tggtctgggtcactggctctcagctttcattggttaaagattgtctatgt
gggcaggagagatggctcagcattaagaacatggagctgggtgtggggct
gcatgctttttttgttttgttttgttttttgtttttcaagacagggtttc
tctgtgtagcccttggctgtcctggaactcaagttgtagaccaggctggg
cctcgactcaagaaatcctctgcctctgttgggattaaggcatgcaccac
acgcccgcgccacatgctttatctcagcactgggagaagccagatgatct
cttgtgagttgaggccaaccttggtctgcaagtgagttgcaggaacgaca
gaaaatcattggtgatct
gaattcttttggctttaattcagctgtttgtgctcccgtgacacaaactg
agctcaacccacattttccttagaaagaaaggagaggcggtgcgtagagg
catcaagcatattttcggaggtttaatttccttccagtgtccttaagaaa
tcccccccaccccctaaagcttatgctgcctcaaccccagccctaacggt
agcatcaaagacttttaaattgagacccagggtgagttagctaaagtaaa
taaaaccagagaaggagggaaattaaaagacagtatcagagaaaccacgt
cttcaccaaaaagcaaaaaggaaggaagctggttaggggaggagacctgg
agagggaagaataccaaattccaagagtttaaatgcaaggaacgaaggaa
ttagcactgacagatttagcaaataaaaatgcccagtgcctggttcgatt
tgtattttaaacgacgaataatttttattgtctgccatgcattatttcag
acactctttcatcaaatatttcatacaataaatttatgataaaacgtaat
ttattgcccatcttaaagtcaaatttaattgggcacccttaattgtacgt
taaaaattatcagctagtttaaacaccttttagactggtcagctttgctt
ccctggggatcttgctggtcgtttatacagatgtcccctgcctttgtggg
tatatttgtcctttgggaatttacaacagagaggaactccccagagaagc
tgaaagtggaatacaaagaccagactgctagaggaggtccaggcatggag
gttaagtggagccagtatccttgagcctccccatcaccgcaatctggcca
caggagcggccctgctcagctagagggattccagcccgggcccctccccg
cggtgagctaaggatttagggatgactacaggagggtggagagctgccac
gtttccaggtcctggaggagcgcgcagaaggacttcaaaacacacactca
acacaacacacaacacacgatacacaacacacaacagacacactgtacac
acccctagatgctgtgattctcttcgctcttctggcctgatttcccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144117164_144118336
seq2: B6Ng01-266L09.b_45_1212 (reverse)

seq1  AGATCAACCAATGGGTTTTCTGTCTGTCCTGCAACTCACTTTGCAGACC-  49
      ||||| |||||| | |||||||||  ||||||||||||| ||||||||| 
seq2  AGATC-ACCAAT-GATTTTCTGTCGTTCCTGCAACTCAC-TTGCAGACCA  47

seq1  AGGTTGGCCTCAAACTCAC-AGAGATCCATCT-GCCTCT-CCAGTGCTGA  96
      ||||||||||| ||||||| |||||| ||||| || ||| ||||||||||
seq2  AGGTTGGCCTC-AACTCACAAGAGAT-CATCTGGCTTCTCCCAGTGCTGA  95

seq1  GATTAAAAGCATGTGGCGCCGGGCGTGGTGGTGCATGCCTTTAATCCCAA  146
      |||  ||||||||||||| ||||||| |||||||||||| ||||||||||
seq2  GAT--AAAGCATGTGGCG-CGGGCGT-GTGGTGCATGCC-TTAATCCCAA  140

seq1  CAGAGGCAGGAGGATTTC-TGAGTTCGAGG-CCAGCCTGGTCTACAACTT  194
      |||||||| ||||||||| |||| |||||| |||||||||||||||||||
seq2  CAGAGGCA-GAGGATTTCTTGAG-TCGAGGCCCAGCCTGGTCTACAACTT  188

seq1  GAGTTCCAGGACAGCC-AGGGCTACACAGAGAAACCCTGTCTTGAAAAAC  243
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAAGGGCTACACAGAGAAACCCTGTCTTGAAAAAC  238

seq1  AAAAAACAAAACAAAACAAAAAAAGCATGCAGCCCCACACCCAGCTCCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACAAAACAAAAAAAGCATGCAGCCCCACACCCAGCTCCAT  288

seq1  GTTCTTAATGCTGAGCCATCTCTCCTGCCCACATAGACAATCTTTAACCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAATGCTGAGCCATCTCTCCTGCCCACATAGACAATCTTTAACCA  338

seq1  ATGAAAGCTGAGAGCCAGTGACCCAGACCAGGCCAGCTTTGAGCCATGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTGAGAGCCAGTGACCCAGACCAGGCCAGCTTTGAGCCATGTT  388

seq1  CCTCCTGTAGTCACTAAAGGGTGCCAACAGCAATGACCTGCTCTTTGGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTAGTCACTAAAGGGTGCCAACAGCAATGACCTGCTCTTTGGCC  438

seq1  ACCTGTTGTGGCCTTATCTTCCTTTGATAGTGCCTGGGACCAAACAAATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGTGGCCTTATCTTCCTTTGATAGTGCCTGGGACCAAACAAATG  488

seq1  GCTATTATCAGGTCAGCTTTGGGGACCTCAGACTAATACAATGGGTTGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATCAGGTCAGCTTTGGGGACCTCAGACTAATACAATGGGTTGGT  538

seq1  TATTGCATCAGCGTGCTAATGAGTATGCTTCAGAAACAAGCCCACCCACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATCAGCGTGCTAATGAGTATGCTTCAGAAACAAGCCCACCCACA  588

seq1  GGCTGTCCCCTACCACACACGGCTGCGCCCACGGCTGCGTGTCTAGACTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCCCTACCACACACGGCTGCGCCCACGGCTGCGTGTCTAGACTA  638

seq1  CGTAGGAGCACGTGCACAGCCAACAGTCCTAGCACAGGAAAAAGCATTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGAGCACGTGCACAGCCAACAGTCCTAGCACAGGAAAAAGCATTTC  688

seq1  TCAGCTGTCCCCACCATCCTTCTATTTGTCATTCCATCCATCTGCTGTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCCCCACCATCCTTCTATTTGTCATTCCATCCATCTGCTGTCC  738

seq1  CTGAGAAACACTCACCCACGTCAGCTAAAATGGTACGCTGGGCTTGGAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACACTCACCCACGTCAGCTAAAATGGTACGCTGGGCTTGGAAC  788

seq1  TGGCTGAGGAAATGTCAGGCCGGCAGAACAGAGAAGAAAACCAAAATAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGGAAATGTCAGGCCGGCAGAACAGAGAAGAAAACCAAAATAGC  838

seq1  AATTGTGTGGACAGCGCTGGTAACACAGATCTACCCTTCTGGATGGGGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTGGACAGCGCTGGTAACACAGATCTACCCTTCTGGATGGGGTG  888

seq1  GAGGGAGCACAGGAGGCCTTTCCAGGGGCTGTGTCAAGAGAACTTGGAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCACAGGAGGCCTTTCCAGGGGCTGTGTCAAGAGAACTTGGAGG  938

seq1  GAACTTTGGGAACCTAGCTGCTGGCGCGGGGCCTTCCCACTATCTTCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGGGAACCTAGCTGCTGGCGCGGGGCCTTCCCACTATCTTCTCT  988

seq1  GGGGCACCTGGGAACTCTTGGCCCTTTCCTGGAACCAGCCACTTACATCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACCTGGGAACTCTTGGCCCTTTCCTGGAACCAGCCACTTACATCA  1038

seq1  GATTCTGCTTCGTGCAACTCTGCAAGAGCAGTTTTTTTTGGTTTGGTTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCTTCGTGCAACTCTGCAAGAGCAGTTTTTTTTGGTTTGGTTTG  1088

seq1  GTTTTGGTTTGTTTTAAGATTAATATTGACAGGCCTATAATACCAGCACC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTGTTTTAAGATTAATATTGACAGGCCTATAATACCAGCACC  1138

seq1  CAGGAGGAGAGGCAGGAGGATGGTGAATTC  1173
      ||||||||||||||||||||||||||||||
seq2  CAGGAGGAGAGGCAGGAGGATGGTGAATTC  1168

seq1: chr2_143990027_143991135
seq2: B6Ng01-266L09.g_68_1166

seq1  GAATTCTTTTGGCTTTAATTCAGCTGTTTGTGCTCCCGTGACACAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGCTTTAATTCAGCTGTTTGTGCTCCCGTGACACAAACTG  50

seq1  AGCTCAACCCACATTTTCCTTAGAAAGAAAGGAGAGGCGGTGCGTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAACCCACATTTTCCTTAGAAAGAAAGGAGAGGCGGTGCGTAGAGG  100

seq1  CATCAAGCATATTTTCGGAGGTTTAATTTCCTTCCAGTGTCCTTAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCATATTTTCGGAGGTTTAATTTCCTTCCAGTGTCCTTAAGAAA  150

seq1  TCCCCCCCACCCCCTAAAGCTTATGCTGCCTCAACCCCAGCCCTAACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCACCCCCTAAAGCTTATGCTGCCTCAACCCCAGCCCTAACGGT  200

seq1  AGCATCAAAGACTTTTAAATTGAGACCCAGGGTGAGTTAGCTAAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAAGACTTTTAAATTGAGACCCAGGGTGAGTTAGCTAAAGTAAA  250

seq1  TAAAACCAGAGAAGGAGGGAAATTAAAAGACAGTATCAGAGAAACCACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGAGAAGGAGGGAAATTAAAAGACAGTATCAGAGAAACCACGT  300

seq1  CTTCACCAAAAAGCAAAAAGGAAGGAAGCTGGTTAGGGGAGGAGACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAAAAAGCAAAAAGGAAGGAAGCTGGTTAGGGGAGGAGACCTGG  350

seq1  AGAGGGAAGAATACCAAATTCCAAGAGTTTAAATGCAAGGAACGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGAATACCAAATTCCAAGAGTTTAAATGCAAGGAACGAAGGAA  400

seq1  TTAGCACTGACAGATTTAGCAAATAAAAATGCCCAGTGCCTGGTTCGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGACAGATTTAGCAAATAAAAATGCCCAGTGCCTGGTTCGATT  450

seq1  TGTATTTTAAACGACGAATAATTTTTATTGTCTGCCATGCATTATTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAAACGACGAATAATTTTTATTGTCTGCCATGCATTATTTCAG  500

seq1  ACACTCTTTCATCAAATATTTCATACAATAAATTTATGATAAAACGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTCATCAAATATTTCATACAATAAATTTATGATAAAACGTAAT  550

seq1  TTATTGCCCATCTTAAAGTCAAATTTAATTGGGCACCCTTAATTGTACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCCATCTTAAAGTCAAATTTAATTGGGCACCCTTAATTGTACGT  600

seq1  TAAAAATTATCAGCTAGTTTAAACACCTTTTAGACTGGTCAGCTTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATCAGCTAGTTTAAACACCTTTTAGACTGGTCAGCTTTGCTT  650

seq1  CCCTGGGGATCTTGCTGGTCGTTTATACAGATGTCCCCTGCCTTTGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGATCTTGCTGGTCGTTTATACAGATGTCCCCTGCCTTTGTGGG  700

seq1  TATATTTGTCCTTTGGGAATTTACAACAGAGAGGAACTCCCCAGAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTCCTTTGGGAATTTACAACAGAGAGGAACTCCCCAGAGAAGC  750

seq1  TGAAAGTGGAATACAAAGACCAGACTGCTAGAGGAGGTCCAGGCATGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGGAATACAAAGACCAGACTGCTAGAGGAGGTCCAGGCATGGAG  800

seq1  GTTAAGTGGAGCCAGTATCCTTGAGCCTCCCCATCACCGCAATCTGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGGAGCCAGTATCCTTGAGCCTCCCCATCACCGCAATCTGGCCA  850

seq1  CAGGAGCGGCCCTGCTCAGCTAGAGGGATTCCAGCCCGGGCCCCTCCCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCGGCCCTGCTCAGCTAGAGGGATTCCAGCCCGGGCCCCTCCCCG  900

seq1  CGGTGAGCTAAGGATTTAGGGATGACTACAGGAGGGTGGAGAGCTGCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGCTAAGGATTTAGGGATGACTACAGGAGGGTGGAGAGCTGCCAC  950

seq1  G-TTCCA-GTCCTGGAGGAGCGCGCAGAAGGGACTTCACACACACACACT  998
      | ||||| ||||||||||||||||||||| |||||||| | |||||||||
seq2  GTTTCCAGGTCCTGGAGGAGCGCGCAGAA-GGACTTCA-AAACACACACT  998

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  1048
      || ||||| ||||||| ||||||  | ||||| ||||||| ||| |||||
seq2  CA-ACACA-ACACACA-ACACAC-GATACACA-ACACACA-ACAGACACA  1042

seq1  CCTGTACACACCCCTAAGATGCTGTGA-TCTCTTCGCTTCCTTCTGCCCT  1097
       |||||||||||||| ||||||||||| ||||||||||  |||||| |||
seq2  -CTGTACACACCCCT-AGATGCTGTGATTCTCTTCGCT--CTTCTGGCCT  1088

seq1  GTATTTTCCTTC  1109
      | |||| |||||
seq2  G-ATTTCCCTTC  1099