BAC Information

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BAC

Clone NameB6Ng01-269J06
Chromosome2 (Build37)
Map Location 32,334,256 - 32,452,103
singlet/doubletdoublet
Overlap geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4
Upstream geneAss1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik
Downstream geneSt6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269J06.bB6Ng01-269J06.g
ACCGA072137GA072138
length1,018570
definitionB6Ng01-269J06.b B6Ng01-269J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,334,256 - 32,334,976)(32,451,528 - 32,452,103)
sequence
gaattctgtctctgtctcagagagccaattcttccatgttcttactccat
gctgttgaacaagatgcccagctgtccttcagtggggaggctgtgactca
ggactgaagccgagggcagatctcatagaccttctcactctgcttgcttc
gatcaccaatttttgaggctaccatagctaagcaacactcccattagctc
tgctctctgttgcaccctagccacggtcaccatggtaacagttgcagaag
tggctcttcaggaacttagaagcttgtctgtccacctcaaattagctgtt
agagctgcactgttgagagatgacctttcaccttcagaggacttgcctta
gtcagaggttctcttcctgcacgaacatcaggaacaagaagcaagctggg
gaggaaagggttcattcagcttacatgttcacattgctgttcatcaccaa
aggaagtcaggactggaactcacacagggcaggaagcaggagctggaaca
tgacccccttattctattaccagctttctgctttccaacttcctctaatc
ttggttgtgctagaacttgctctgtagattgaccttaaactcagaggtct
gcatggctctaataggattaaaggcctgcgccagcatgcctggcctttag
cttttctttacctagaatttgctctatcctaggctggccttgaatttaga
gatctacttgggtttgtctccttggattaatggtatgtagctccatgcct
ggacctacatttagctgggcaggctcttgccccaaagtcctactccctta
atctgttatctcctagaacacaggactcagctccatttcactttccaatg
cccctttagtactcaaaccatatgttttatatttttcctttctaagcttg
ctatgcttattcaaaaatgctcttcatgagacttaaccagagaacaaagt
ctatgatggggcgttttcttgagacttccttttgtcagggccaatcatct
tagttctcttcagcctta
catatccatatctgaactcacagtatttaagtcaactaaatctatctgta
atgtttcattaaaatagatatagggtccagggggtgagcactccatcagg
tgggtctaacccaaggctcactttgccaaatctttttggcaacttaactt
ttttttgcatctattcattatttggggggtggggggtaagaagctgccac
aaagtgcatgtggaggtcaaaagacattttgagagcagggtctctttcca
ccacgtggatcctaagatgttttgttttgtttgacacaaggattctctgg
gctgccctggaactccctctgtagaccaggctggccctgaactctgcctc
ctgagtgctgggattagagctgtgtgcaccacctcctggttcttaagtat
gacctctgtattagatgatgtcacgtagcaaagtctcatagttacataga
cggttcaccaacctgagaggtgtacaaggctttgttttggtttgagtttt
tcagaggggctctcagaaggtgtggggcggggtagccttgaacttgatct
ggatccaaggtttgctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32334256_32334976
seq2: B6Ng01-269J06.b_43_763

seq1  GAATTCTGTCTCTGTCTCAGAGAGCCAATTCTTCCATGTTCTTACTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCTGTCTCAGAGAGCCAATTCTTCCATGTTCTTACTCCAT  50

seq1  GCTGTTGAACAAGATGCCCAGCTGTCCTTCAGTGGGGAGGCTGTGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAACAAGATGCCCAGCTGTCCTTCAGTGGGGAGGCTGTGACTCA  100

seq1  GGACTGAAGCCGAGGGCAGATCTCATAGACCTTCTCACTCTGCTTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAGCCGAGGGCAGATCTCATAGACCTTCTCACTCTGCTTGCTTC  150

seq1  GATCACCAATTTTTGAGGCTACCATAGCTAAGCAACACTCCCATTAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCAATTTTTGAGGCTACCATAGCTAAGCAACACTCCCATTAGCTC  200

seq1  TGCTCTCTGTTGCACCCTAGCCACGGTCACCATGGTAACAGTTGCAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGTTGCACCCTAGCCACGGTCACCATGGTAACAGTTGCAGAAG  250

seq1  TGGCTCTTCAGGAACTTAGAAGCTTGTCTGTCCACCTCAAATTAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCAGGAACTTAGAAGCTTGTCTGTCCACCTCAAATTAGCTGTT  300

seq1  AGAGCTGCACTGTTGAGAGATGACCTTTCACCTTCAGAGGACTTGCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCACTGTTGAGAGATGACCTTTCACCTTCAGAGGACTTGCCTTA  350

seq1  GTCAGAGGTTCTCTTCCTGCACGAACATCAGGAACAAGAAGCAAGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGTTCTCTTCCTGCACGAACATCAGGAACAAGAAGCAAGCTGGG  400

seq1  GAGGAAAGGGTTCATTCAGCTTACATGTTCACATTGCTGTTCATCACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGGTTCATTCAGCTTACATGTTCACATTGCTGTTCATCACCAA  450

seq1  AGGAAGTCAGGACTGGAACTCACACAGGGCAGGAAGCAGGAGCTGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCAGGACTGGAACTCACACAGGGCAGGAAGCAGGAGCTGGAACA  500

seq1  TGACCCCCTTATTCTATTACCAGCTTTCTGCTTTCCAACTTCCTCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCTTATTCTATTACCAGCTTTCTGCTTTCCAACTTCCTCTAATC  550

seq1  TTGGTTGTGCTAGAACTTGCTCTGTAGATTGACCTTAAACTCAGAGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTGCTAGAACTTGCTCTGTAGATTGACCTTAAACTCAGAGGTCT  600

seq1  GCATGGCTCTAATAGGATTAAAGGCCTGCGCCAGCATGCCTGGCCTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTCTAATAGGATTAAAGGCCTGCGCCAGCATGCCTGGCCTTTAG  650

seq1  CTTTTCTTTACCTAGAATTTGCTCTATCCTAGGCTGGCCTTGAATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTACCTAGAATTTGCTCTATCCTAGGCTGGCCTTGAATTTAGA  700

seq1  GATCTACTTGGGTTTGTCTCC  721
      |||||||||||||||||||||
seq2  GATCTACTTGGGTTTGTCTCC  721

seq1: chr2_32451528_32452103
seq2: B6Ng01-269J06.g_66_641 (reverse)

seq1  TCAAAGCTAACCTTGGCTCCAGATCAAGTTCAAGGCTACCCCGCCCCACA  50
      | ||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAAGCAAACCTTGGATCCAGATCAAGTTCAAGGCTACCCCGCCCCACA  50

seq1  CCTTCTGAGAGCCCCTCTGAAAAACTCAAACCAAAACAAAGCCTTGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGAGCCCCTCTGAAAAACTCAAACCAAAACAAAGCCTTGTACA  100

seq1  CCTCTCAGGTTGGTGAACCGTCTATGTAACTATGAGACTTTGCTACGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGTTGGTGAACCGTCTATGTAACTATGAGACTTTGCTACGTGA  150

seq1  CATCATCTAATACAGAGGTCATACTTAAGAACCAGGAGGTGGTGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTAATACAGAGGTCATACTTAAGAACCAGGAGGTGGTGCACACA  200

seq1  GCTCTAATCCCAGCACTCAGGAGGCAGAGTTCAGGGCCAGCCTGGTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATCCCAGCACTCAGGAGGCAGAGTTCAGGGCCAGCCTGGTCTAC  250

seq1  AGAGGGAGTTCCAGGGCAGCCCAGAGAATCCTTGTGTCAAACAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGTTCCAGGGCAGCCCAGAGAATCCTTGTGTCAAACAAAACAAA  300

seq1  ACATCTTAGGATCCACGTGGTGGAAAGAGACCCTGCTCTCAAAATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAGGATCCACGTGGTGGAAAGAGACCCTGCTCTCAAAATGTCTT  350

seq1  TTGACCTCCACATGCACTTTGTGGCAGCTTCTTACCCCCCACCCCCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCACATGCACTTTGTGGCAGCTTCTTACCCCCCACCCCCCAAA  400

seq1  TAATGAATAGATGCAAAAAAAAGTTAAGTTGCCAAAAAGATTTGGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATAGATGCAAAAAAAAGTTAAGTTGCCAAAAAGATTTGGCAAAG  450

seq1  TGAGCCTTGGGTTAGACCCACCTGATGGAGTGCTCACCCCCTGGACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGGGTTAGACCCACCTGATGGAGTGCTCACCCCCTGGACCCTA  500

seq1  TATCTATTTTAATGAAACATTACAGATAGATTTAGTTGACTTAAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTAATGAAACATTACAGATAGATTTAGTTGACTTAAATACTG  550

seq1  TGAGTTCAGATATGGATATGGAATTC  576
      ||||||||||||||||||||||||||
seq2  TGAGTTCAGATATGGATATGGAATTC  576