BAC Information

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BAC

Clone NameB6Ng01-271G20
Chromosome2 (Build37)
Map Location 119,111,033 - 119,309,921
singlet/doubletdoublet
Overlap geneVps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612
Upstream geneGpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov
Downstream geneExdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271G20.bB6Ng01-271G20.g
ACCGA073512GA073513
length1,176956
definitionB6Ng01-271G20.b B6Ng01-271G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,111,033 - 119,112,199)(119,308,973 - 119,309,921)
sequence
gaattcaaagtcatcttcacggatacctggtaagttcaaggctatcctgg
gccacatagtgagttctaagtctgcttgggacacataagaccctgtccca
aaaagcaaaatatataaagcgtatatatatttttaaaagatttatttatt
gtatataagtacactgtagctgtctttaaacataccagaaaagggcacca
gatctcattacagatggttgtgagccatcatatggttgctgggaattgac
ctcaggacctctggaagagcagtcagtgctcttaaccgctgagccatctc
tccactccccagatcccccaaatcagttgttttgttatctcttgtcctct
acttggtaacagtctgacatttgggcccagtcttgttgttgtcagtgctg
gggcttgaatccagacctatacacttcaggctcagggaactgtttgtttg
cttgttttatatatttgtttgtttatttaatatatgtgagtacactatag
ctgtcttcagacacactagaagagggcattggatcccattacagatggtt
ttgagccaccatgtgcttactgggaattgaactcaggacctttggaactt
actatgaaaaccagactgaacttgaattcatggagaggtgcctgaatcta
cattttttaaaaatcttttttaattatttattttgcttttgcttttcgat
gacagggtttccctggctgtcctggaactcactctgtagaacaggctgac
ctggaactcacagagatctgcctgcgtgggattaaaggtgtgccccacca
ctgcctggcaactctatttttaaacagattcttccctgggcctggaactc
cctcattgttagattggctggtcagtcggtgctgggagtcacctgtcttg
tctcacagcagtgctggggtttcagaggcttgcttttgttgttttaatca
ctctgttggggtcaaaggtgtggtgtcacctttaccctgccagatacctg
cctttattgtggctgcttgtgacttcctttcctcagcaagcactttaccc
acggagcttatctccaagccctcctgggttttgaaataaaggctccatgc
agcctagctggactctactttgggtcttacagttcaaagatggacttttt
tcttctcttttaaaatttaacctacc
gcattctgtgcttaggtgtttgcgggattgtggggtaggggtccttcaaa
tggtatcttacaaacttgacagcagcttatctgacatcacactgtccttt
gtccataaagctaatagtgaacagtcccatgtctggtttcctcaatggtt
gttgggccagttcgtctactggaacacttattcagttattaattcaaagt
gctttactggaatgaatgggcattgcatagagttgtgtagagcttttgtg
gctcagtagtaagaaagcatgtccattaataaaaaggggggtatgctgga
gagatggcagcatttaaaaacactggctgttgttctagaggcccagggtt
tgattcctagcacctacgttgtggctcataactgcaactccaatcccaag
ggatctggtgtcctattctgacctctggaggtactgcatgcacgtggtgc
acaaacatataggcaaacatctacacacattaaaaagtcagctgggatgt
ggtggcccacatctttaatcccagcacttgggaggcagaggcagttgaat
ttctgagtttgaggccagcctggtctacaaagtgagttccaggacagcca
gggctatacagagaaatcctgtctcacaaaacaaaacaaaaaccaaaaaa
aaaaaaaaaaaaaaccccaaatttctaaaaagtttttgattctagcccac
cactgcccggctagaaatttgttcttgttgttattatttattttttttta
aagcccagacagtggtgggcgtgtgtcgaaggtaggcagatctctgagtt
agtgggcgttttcctgacagcaggcatttccttagtccaactgtaaggtc
tctgtcctttaaattctcagaaaaaaaaaatctatgggcaacctctggcc
aatctcccgaaaggtcgccaactgtgtcataggtaagttttctcaagtga
aattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119111033_119112199
seq2: B6Ng01-271G20.b_45_1220

seq1  GAATTCAAAGTCATCTTCACGGATACCTGGTAAGTTCAAGGCTATCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCATCTTCACGGATACCTGGTAAGTTCAAGGCTATCCTGG  50

seq1  GCCACATAGTGAGTTCTAAGTCTGCTTGGGACACATAAGACCCTGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATAGTGAGTTCTAAGTCTGCTTGGGACACATAAGACCCTGTCCCA  100

seq1  AAAAGCAAAATATATAAAGCGTATATATATTTTTAAAAGATTTATTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAATATATAAAGCGTATATATATTTTTAAAAGATTTATTTATT  150

seq1  GTATATAAGTACACTGTAGCTGTCTTTAAACATACCAGAAAAGGGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAGTACACTGTAGCTGTCTTTAAACATACCAGAAAAGGGCACCA  200

seq1  GATCTCATTACAGATGGTTGTGAGCCATCATATGGTTGCTGGGAATTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTACAGATGGTTGTGAGCCATCATATGGTTGCTGGGAATTGAC  250

seq1  CTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTC  300

seq1  TCCACTCCCCAGATCCCCCAAATCAGTTGTTTTGTTATCTCTTGTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCCCAGATCCCCCAAATCAGTTGTTTTGTTATCTCTTGTCCTCT  350

seq1  ACTTGGTAACAGTCTGACATTTGGGCCCAGTCTTGTTGTTGTCAGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTAACAGTCTGACATTTGGGCCCAGTCTTGTTGTTGTCAGTGCTG  400

seq1  GGGCTTGAATCCAGACCTATACACTTCAGGCTCAGGGAACTGTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGAATCCAGACCTATACACTTCAGGCTCAGGGAACTGTTTGTTTG  450

seq1  CTTGTTTTATATATTTGTTTGTTTATTTAATATATGTGAGTACACTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATATATTTGTTTGTTTATTTAATATATGTGAGTACACTATAG  500

seq1  CTGTCTTCAGACACACTAGAAGAGGGCATTGGATCCCATTACAGATGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAGACACACTAGAAGAGGGCATTGGATCCCATTACAGATGGTT  550

seq1  TTGAGCCACCATGTGCTTACTGGGAATTGAACTCAGGACCTTTGGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCACCATGTGCTTACTGGGAATTGAACTCAGGACCTTTGGAACTT  600

seq1  ACTATGAAAACCAGACTGAACTTGAATTCATGGAGAGGTGCCTGAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAAACCAGACTGAACTTGAATTCATGGAGAGGTGCCTGAATCTA  650

seq1  CATTTTTTAAAAATCTTTTTTAATTATTTATTTTGCTTTTGCTTTTCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAAATCTTTTTTAATTATTTATTTTGCTTTTGCTTTTCGAT  700

seq1  GACAGGGTTTCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGGCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGGCTGAC  750

seq1  CTGGAACTCACAGAGATCTGCCTGCGTGGGATTAAAGGTGTGCCCCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACAGAGATCTGCCTGCGTGGGATTAAAGGTGTGCCCCACCA  800

seq1  CTGCCTGGCAACTCTATTTTTAAACAGATTCTTCCCTGGGCCTGGAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCAACTCTATTTTTAAACAGATTCTTCCCTGGGCCTGGAACTC  850

seq1  CCTCATTGTTAGATTGGCTGGTCAGTCGGTGCTGGGAGTCACCTGTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGTTAGATTGGCTGGTCAGTCGGTGCTGGGAGTCACCTGTCTTG  900

seq1  TCTCACAGCAGTGCTGGGGTTTCAGAGGCTTGC-TTTGTTGTTTTAATCA  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCACAGCAGTGCTGGGGTTTCAGAGGCTTGCTTTTGTTGTTTTAATCA  950

seq1  CTCTGTTGGGGTCAAAGGTGT-GTGTCACC-TTACCCTGCCAGATACCTG  997
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTCTGTTGGGGTCAAAGGTGTGGTGTCACCTTTACCCTGCCAGATACCTG  1000

seq1  CC-TTAATGTGGCTGC-TGTGACT--CCTTCCTCAGCAAGCACTTTACCC  1043
      || ||| ||||||||| |||||||  | ||||||||||||||||||||||
seq2  CCTTTATTGTGGCTGCTTGTGACTTCCTTTCCTCAGCAAGCACTTTACCC  1050

seq1  ACGGAGC-TATCTCCCCAGCCCTCCCTGGTTTTGAAAT-AAGGCTTCATG  1091
      ||||||| ||||| || ||||||||  ||||||||||| |||||| ||||
seq2  ACGGAGCTTATCT-CCAAGCCCTCCTGGGTTTTGAAATAAAGGCTCCATG  1099

seq1  CAGCCTAGGCTGGCCTCTACTTT-GTTCTTACAG-TCAAAGATGAACTTT  1139
      ||||||| ||||| ||||||||| | |||||||| ||||||||| |||||
seq2  CAGCCTA-GCTGGACTCTACTTTGGGTCTTACAGTTCAAAGATGGACTTT  1148

seq1  TTCTTCCTCTTTAAAAATTTTACCTACC  1167
      ||  | |||||| ||||||| |||||||
seq2  TTTCTTCTCTTTTAAAATTTAACCTACC  1176

seq1: chr2_119308973_119309921
seq2: B6Ng01-271G20.g_146_1101 (reverse)

seq1  AGAATTTCACTTGAGAAAAACTACCCTATGACAACAGTTGGGCGA-CTTT  49
      ||||||||||||||| ||||||  |||||||| |||||| ||||| ||||
seq2  AGAATTTCACTTGAG-AAAACTTACCTATGAC-ACAGTT-GGCGACCTTT  47

seq1  CGGGAGA-TAGCCAGAGGTTG-CCATAGA-ATTTTTTTTCTGAGAATTTA  96
      ||||||| | ||||||||||| |||||||  |||||||||||||||||||
seq2  CGGGAGATTGGCCAGAGGTTGCCCATAGATTTTTTTTTTCTGAGAATTTA  97

seq1  AAGGACAGAGACC-TACAG-TGGACTAA-GAAATGCCTGCTGTCAGG-AA  142
      ||||||||||||| ||||| |||||||| |||||||||||||||||| ||
seq2  AAGGACAGAGACCTTACAGTTGGACTAAGGAAATGCCTGCTGTCAGGAAA  147

seq1  ACG-CCACTAACTCAGAGATCTGCCTACCTTTGACACACG-CCACCACTG  190
      ||| ||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ACGCCCACTAACTCAGAGATCTGCCTACCTTCGACACACGCCCACCACTG  197

seq1  TCT-GGCTTT-AAAAAAAATAAATAAATAACAACAAGAACAAATTTCTAG  238
      ||| |||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TCTGGGCTTTAAAAAAAAATAAAT-AATAACAACAAGAACAAATTTCTAG  246

seq1  CCGGGCAGTGGTGGGCTAGAATCAAAAACTTTTTAGAAATTTGGGGTTTT  288
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCGGGCAGTGGTGGGCTAGAATCAAAAACTTTTTAGAAATTTGGGG-TTT  295

seq1  TTTTTTTTTTTTTTTTTGGTTTTTGTTTTGTTTTGTGAGACAGGATTTCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGTTTTTGTTTTGTTTTGTGAGACAGGATTTCT  345

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  395

seq1  CAAACTCAGAAATTCAACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAAATTCAACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGA  445

seq1  TGTGGGCCACCACATCCCAGCTGACTTTTTAATGTGTGTAGATGTTTGCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCACCACATCCCAGCTGACTTTTTAATGTGTGTAGATGTTTGCC  495

seq1  TATATGTTTGTGCACCACGTGCATGCAGTACCTCCAGAGGTCAGAATAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTGTGCACCACGTGCATGCAGTACCTCCAGAGGTCAGAATAGG  545

seq1  ACACCAGATCCCTTGGGATTGGAGTTGCAGTTATGAGCCACAACGTAGGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGATCCCTTGGGATTGGAGTTGCAGTTATGAGCCACAACGTAGGT  595

seq1  GCTAGGAATCAAACCCTGGGCCTCTAGAACAACAGCCAGTGTTTTTAAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATCAAACCCTGGGCCTCTAGAACAACAGCCAGTGTTTTTAAAT  645

seq1  GCTGCCATCTCTCCAGCATACCCCCCTTTTTATTAATGGACATGCTTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATCTCTCCAGCATACCCCCCTTTTTATTAATGGACATGCTTTCT  695

seq1  TACTACTGAGCCACAAAAGCTCTACACAACTCTATGCAATGCCCATTCAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAGCCACAAAAGCTCTACACAACTCTATGCAATGCCCATTCAT  745

seq1  TCCAGTAAAGCACTTTGAATTAATAACTGAATAAGTGTTCCAGTAGACGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAAAGCACTTTGAATTAATAACTGAATAAGTGTTCCAGTAGACGA  795

seq1  ACTGGCCCAACAACCATTGAGGAAACCAGACATGGGACTGTTCACTATTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCAACAACCATTGAGGAAACCAGACATGGGACTGTTCACTATTA  845

seq1  GCTTTATGGACAAAGGACAGTGTGATGTCAGATAAGCTGCTGTCAAGTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGGACAAAGGACAGTGTGATGTCAGATAAGCTGCTGTCAAGTTT  895

seq1  GTAAGATACCATTTGAAGGACCCCTACCCCACAATCCCGCAAACACCTAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATACCATTTGAAGGACCCCTACCCCACAATCCCGCAAACACCTAA  945

seq1  GCACAGAATGC  949
      |||||||||||
seq2  GCACAGAATGC  956