BAC Information

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BAC

Clone NameB6Ng01-271M12
Chromosome1 (Build37)2 (Build37)
Map Location 46,567,128 - 46,567,41336,008,936 - 36,010,034
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271M12.bB6Ng01-271M12.g
ACCGA073773GA073774
length1,0631,098
definitionB6Ng01-271M12.b B6Ng01-271M12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,567,128 - 46,567,413)(36,008,936 - 36,010,034)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctgaaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgaataaa
agaatggaccatgtagacactagcatatccggggatccatcccatagtca
gcttccaaatgctgacaccattgcatacactagcaagattatgctgaaag
gaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaaca
tagaagtggatgctcacagtcggctattggatggatcacatggccccaat
gaaggagctagagaaagtaccaaagaagctaaagggatctgcaaccctat
aggtgaacaacattatgaactacagtacccggagctcttgactctagctg
catatgcatcaaa

gaattccaatgtgattctgctagcattacatactctttccactgcctgaa
acttcctgtgaacagccttgtcacattggtaagatgcttatgtatgtttg
ttgaatctgaattagataaagaggtatgagcttctaaggtcctttagaat
cctaaaaccttattactttttctttaggatcccttgatcatattactgtg
gtaactgctgatgggaaggttgctctaaatcagattggccagatctccat
gaagtcgccacaggtgattctggtgaatatggccagcttcccagaggtaa
ggtgccttattgtaagggtctgtcttcagagtttcttttggaataaagga
ggtttgatcaggtcagaaggaaatgttcccttttgtttgggaagaaattt
atgaaagaaaatttaggataaaaaaaaagctctcttatttctatatttct
tacctgttaaactcaaatgttacagtgaccaagtaagtaatttgaaaaac
aataatggagagtagtgactgactcttggggcagtgtaagggtctgctaa
cctgctgtcttagttacttttctattgctgtgacaaatcactatgaccaa
ggcaacttaaagaagaaagcacttaattcgagtctcatagttccaggggg
ttagtctctgaccatcatggaggggaacatggtagcaggcaggcagacat
ggagatggagcatagctaaaagcttttgaaactttaaaactgacccccag
agacacatctcttccaacaaggccacacataataatccttcccaaacagt
tccacaaaatggggaccaaacattcaaatatatgattctaaaggggccat
tctcattcaaaccatccatacctggaagtagtcacgcggcctgtttctga
gtcacctctgcccagttcttgcagaagactgcaaggtagaaatgtaggcc
tggtaattcctattaacagatgcttcaatttttagtttcaaaagaagcta
gtaatcctgaatgtgtacaaagtatcgtttgttgtctaaatgtttttgat
atccactttttctctcttttaaatgtctggcagcagggaatgctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_46567128_46567413
seq2: B6Ng01-271M12.b_828_1108

seq1  GGATCTATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTA  50
      ||||| |||||||| |||||||||||| ||||||||||||||||||||||
seq2  GGATCCATCCCATAGTCAGCTTCCAAATGCTGACACCATTGCATACACTA  50

seq1  GCAAGATTTTGCTGAAAGTACCCAGATATAGCTGTCTCTTGTGAGATTAT  100
      |||||||| ||||||||| |||| |||||||||||||||||| ||| |||
seq2  GCAAGATTATGCTGAAAGGACCCTGATATAGCTGTCTCTTGTCAGAGTAT  100

seq1  GCTGGGGCCTAACAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGAT  150
      ||  ||||||| |||||| |||||||||||||||||||| ||||||||||
seq2  GCCTGGGCCTAGCAAACATAGAAGTGGATGCTCACAGTCGGCTATTGGAT  150

seq1  GGATCACAGGGCCCCCAATGGAGGCGCTAGAAAATGTACCCAAGGAGCTA  200
      |||||||| || |||||||| ||| |||||| || ||||| ||| |||||
seq2  GGATCACATGG-CCCCAATGAAGGAGCTAGAGAAAGTACCAAAGAAGCTA  199

seq1  AAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTAC  250
      ||||||||||||||||||||||| ||||||||||||||||||  ||||| 
seq2  AAGGGATCTGCAACCCTATAGGT-GAACAACATTATGAACTA--CAGTA-  245

seq1  CCCGGAGCTCTTGACTCTAGCTGCATACGTATCAAA  286
      ||||||||||||||||||||||||||| | ||||||
seq2  CCCGGAGCTCTTGACTCTAGCTGCATATGCATCAAA  281


seq1: chr2_36008936_36010034
seq2: B6Ng01-271M12.g_66_1163

seq1  GAATTCCAATGTGATTCTGCTAGCATTACATACTCTTTCCACTGCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTGATTCTGCTAGCATTACATACTCTTTCCACTGCCTGAA  50

seq1  ACTTCCTGTGAACAGCCTTGTCACATTGGTAAGATGCTTATGTATGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTGAACAGCCTTGTCACATTGGTAAGATGCTTATGTATGTTTG  100

seq1  TTGAATCTGAATTAGATAAAGAGGTATGAGCTTCTAAGGTCCTTTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGAATTAGATAAAGAGGTATGAGCTTCTAAGGTCCTTTAGAAT  150

seq1  CCTAAAACCTTATTACTTTTTCTTTAGGATCCCTTGATCATATTACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACCTTATTACTTTTTCTTTAGGATCCCTTGATCATATTACTGTG  200

seq1  GTAACTGCTGATGGGAAGGTTGCTCTAAATCAGATTGGCCAGATCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCTGATGGGAAGGTTGCTCTAAATCAGATTGGCCAGATCTCCAT  250

seq1  GAAGTCGCCACAGGTGATTCTGGTGAATATGGCCAGCTTCCCAGAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGCCACAGGTGATTCTGGTGAATATGGCCAGCTTCCCAGAGGTAA  300

seq1  GGTGCCTTATTGTAAGGGTCTGTCTTCAGAGTTTCTTTTGGAATAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTATTGTAAGGGTCTGTCTTCAGAGTTTCTTTTGGAATAAAGGA  350

seq1  GGTTTGATCAGGTCAGAAGGAAATGTTCCCTTTTGTTTGGGAAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCAGGTCAGAAGGAAATGTTCCCTTTTGTTTGGGAAGAAATTT  400

seq1  ATGAAAGAAAATTTAGGATAAAAAAAAAGCTCTCTTATTTCTATATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAATTTAGGATAAAAAAAAAGCTCTCTTATTTCTATATTTCT  450

seq1  TACCTGTTAAACTCAAATGTTACAGTGACCAAGTAAGTAATTTGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTAAACTCAAATGTTACAGTGACCAAGTAAGTAATTTGAAAAAC  500

seq1  AATAATGGAGAGTAGTGACTGACTCTTGGGGCAGTGTAAGGGTCTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGAGAGTAGTGACTGACTCTTGGGGCAGTGTAAGGGTCTGCTAA  550

seq1  CCTGCTGTCTTAGTTACTTTTCTATTGCTGTGACAAATCACTATGACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCTTAGTTACTTTTCTATTGCTGTGACAAATCACTATGACCAA  600

seq1  GGCAACTTAAAGAAGAAAGCACTTAATTCGAGTCTCATAGTTCCAGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTAAAGAAGAAAGCACTTAATTCGAGTCTCATAGTTCCAGGGGG  650

seq1  TTAGTCTCTGACCATCATGGAGGGGAACATGGTAGCAGGCAGGCAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTGACCATCATGGAGGGGAACATGGTAGCAGGCAGGCAGACAT  700

seq1  GGAGATGGAGCATAGCTAAAAGCTTTTGAAACTTTAAAACTGACCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGCATAGCTAAAAGCTTTTGAAACTTTAAAACTGACCCCCAG  750

seq1  AGACACATCTCTTCCAACAAGGCCACACATAATAATCCTTCCCAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATCTCTTCCAACAAGGCCACACATAATAATCCTTCCCAAACAGT  800

seq1  TCCACAAAATGGGGACCAAACATTCAAATATATGATTCTAAAGGGGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAATGGGGACCAAACATTCAAATATATGATTCTAAAGGGGCCAT  850

seq1  TCTCATTCAAACCA-CCATACCTGGAAGTAGTCACGCGGCCTGTTTCTGA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCATTCAAACCATCCATACCTGGAAGTAGTCACGCGGCCTGTTTCTGA  900

seq1  GTCACCTCTGCCCAGTTCTTGCAGAAGACTGCAGGGTAGAAATGTAGGCC  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCACCTCTGCCCAGTTCTTGCAGAAGACTGCAAGGTAGAAATGTAGGCC  950

seq1  TGGTAATTCCTATTAACAGATGCTTCAATTTTTAGTTTCAAAAGAAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTCCTATTAACAGATGCTTCAATTTTTAGTTTCAAAAGAAGCTA  1000

seq1  GTAATCCTGAATGTTGTACAAAGTATCGTTTGTTGTCTAAATGTTTTGGA  1049
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GTAATCCTGAATG-TGTACAAAGTATCGTTTGTTGTCTAAATGTTTTTGA  1049

seq1  ATAATCCAC-TTTTCTCTTTTAAAAATGTCTGGCAGCCAGGAGTGCTGAC  1098
         |||||| |||||||| ||  ||||||||||||||  ||| |||||||
seq2  --TATCCACTTTTTCTCTCTTTTAAATGTCTGGCAGCAGGGAATGCTGAC  1097

seq1  T  1099
      |
seq2  T  1098


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