BAC Information

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BAC

Clone NameB6Ng01-273I05
Chromosome2 (Build37)13 (Build37)
Map Location 87,447,482 - 87,448,678108,771,478 - 108,771,849
singlet/doubletsingletsinglet
Overlap geneOlfr1130
Upstream geneOlfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129
Downstream geneOlfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273I05.bB6Ng01-273I05.g
ACCGA075067GA075068
length1,180893
definitionB6Ng01-273I05.b B6Ng01-273I05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,447,482 - 87,448,678)(108,771,478 - 108,771,849)
sequence
gaattcagacatatttgcatgtatagattgtttcaaaagagaatatattt
caggctattactcaaagcagcacaggcattatagaagcataaactgatta
tactcccatgagaagaacaaaagctgatgcttttcttcagtaactgtgtt
aagaatcaattcatcatttgttccagagctctaagcactacttgatacgt
aacaattttctcagtgcagcaatcacctccttgtttctaagactgtatat
cagaggatttaacatgggagtcacaatgctgtaaaacagagagaatagtt
tgtcagttcctggagaatgggtggactttggcctcaagtaggtaatagta
gctgatccaaaaaacaaaaacaccacaagcaagtgggaagaacatgttga
gaaggcttttgcccgtcctgtggctgttggcaacttcagaatggtggcaa
tgattttgccataagatgcaagaatcaacataaaagggactgcagcaaat
aatatagccactaaatagacagatagctcatttattgacgtgtctccgca
ggccagcttgagaatgggtggtatgtcacacaagaagtggttgatttggt
tagaattgcagaaatgtagagaaaatatctgacaggtttgtcctatctgg
actgggatgcctccaagccaggaggctgctgccagctgagtgcactttgt
tgggttcatgaccaaaggatagtgcagagggttacagatggccacatagc
ggtcataagacatcacagccagcaggaaacactcagtggctgccagcata
aggaagaaacacaactgggtggcacagctgaggacagaaatctttctctc
ttgagtagcaatgctaaacagaatcctagggagagtgactgaaacataac
agatttccagagaagaaaaatttgccaggaaaaatacatgggcttctgta
gtgcagatcaattctagttatcacaattatgaaactatttccaaccatat
gatcagtaaattatggagaacatcccaaacaaaattcccttgtagttaga
agtctgaaaatcccagagagaaactctgtccaggtggaagcatatctctg
ccctgattctgtgaatttcaatcttttgatgatcatgaaaaatgacagat
ttcttgtccattgaattcaatcatcggtat
gaattctagaaagtctttaatttctttatttcttctttgacctagtggtc
attagtagagggttgtttagattctatgcatttgtaggatttctgttttt
tctgttgttattgttgtttatatccatggtgatctgataagttgagagta
gttatttcaatcttcttttatctgtttaggagtgctttatgacagagtac
atggtcagatttggagatggttccatgcaatcctaaataaaaaaatatat
taatttctgtttgtataaaatattctgtagatatttgttaggtccatttg
attcacaacctctgatagcttccttatttctctggttagtttctgttttg
atcacctgatcattcattggtgagagaatgatgctgaagtctcctgctac
taatgtgtgggttcaatgtgtgatttaagctttagtaatgtttcctttac
aaatatgcgagcccttgcacttgggtaataggtgttcaaaactgagatgt
catcttggtggatttttcatttgatgagtatgaactgtcccttcccatct
cttttggttacttttggttgatagtatattttattagataatacaatgga
cactgcagtttattacttggttcagtttgcttggaaaacttatttctagc
tctttactatgaggtaatgtctacctttgttgctgaggtatattcttcta
tgcagataatggaccctatttatatatctactatggtagcctgtgtcttt
tcaatgggttattaagtcaactgaggttgggagatattaaggaccaaata
ttgttagttcctgttattttgatgttcatgctgttattgtgtctgtgcat
aggtgtgtatgtgtgtgtgtgagagagagagagagagagacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_87447482_87448678
seq2: B6Ng01-273I05.b_46_1225 (reverse)

seq1  ATACACGATGAAATGAATCCAAT-GACAAGAAAATTCTTGTCATTTTTCT  49
      |||| ||||| | ||||| |||| |||||||||  || ||||||||||| 
seq2  ATAC-CGATG-ATTGAATTCAATGGACAAGAAA--TC-TGTCATTTTTC-  44

seq1  ATGAATCATCCAAAAGA-TGAAATTCACAGAAATCAGGGCAGAGGATAAT  98
      ||| ||||| ||||||| |||||||||||| |||||||||||| ||| ||
seq2  ATG-ATCAT-CAAAAGATTGAAATTCACAG-AATCAGGGCAGA-GAT-AT  89

seq1  GCTTCCACTGTGACAGAGTTTCTCCTCCTGGGATTTTCAGACCTTCCTAA  148
      ||||||||   |||||||||||||   |||||||||||||||  | ||||
seq2  GCTTCCACCTGGACAGAGTTTCTC--TCTGGGATTTTCAGAC--TTCTAA  135

seq1  CTTACAAGGG-ATTTTGTTTGGGATGTTCTCCATAATTTACTTGATCATA  197
      | |||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  C-TACAAGGGAATTTTGTTTGGGATGTTCTCCATAATTTAC-TGATCATA  183

seq1  TTGGTTGGAAATAGTTTCATAATTGTGATAACTAGAATTGATCCTGCACT  247
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -TGGTTGGAAATAGTTTCATAATTGTGATAACTAGAATTGAT-CTGCACT  231

seq1  ACAGAAGCCCATGTATTTTTTCCTGGCAAATTTTTCTTCTCTGGAAATCT  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCCATGTA-TTTTTCCTGGCAAATTTTTCTTCTCTGGAAATCT  280

seq1  GTTATGTTTCAGTCACTCTCCCTAGGATTCTGTTTAGCATTGCTACTCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTCAGTCACTCTCCCTAGGATTCTGTTTAGCATTGCTACTCAA  330

seq1  GAGAGAAAGATTTCTGTCCTCAGCTGTGCCACCCAGTTGTGTTTCTTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGATTTCTGTCCTCAGCTGTGCCACCCAGTTGTGTTTCTTCCT  380

seq1  TATGCTGGCAGCCACTGAGTGTTTCCTGCTGGCTGTGATGTCTTATGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGCAGCCACTGAGTGTTTCCTGCTGGCTGTGATGTCTTATGACC  430

seq1  GCTATGTGGCCATCTGTAACCCTCTGCACTATCCTTTGGTCATGAACCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGGCCATCTGTAACCCTCTGCACTATCCTTTGGTCATGAACCCA  480

seq1  ACAAAGTGCACTCAGCTGGCAGCAGCCTCCTGGCTTGGAGGCATCCCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGCACTCAGCTGGCAGCAGCCTCCTGGCTTGGAGGCATCCCAGT  530

seq1  CCAGATAGGACAAACCTGTCAGATATTTTCTCTACATTTCTGCAATTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGGACAAACCTGTCAGATATTTTCTCTACATTTCTGCAATTCTA  580

seq1  ACCAAATCAACCACTTCTTGTGTGACATACCACCCATTCTCAAGCTGGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCAACCACTTCTTGTGTGACATACCACCCATTCTCAAGCTGGCC  630

seq1  TGCGGAGACACGTCAATAAATGAGCTATCTGTCTATTTAGTGGCTATATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGAGACACGTCAATAAATGAGCTATCTGTCTATTTAGTGGCTATATT  680

seq1  ATTTGCTGCAGTCCCTTTTATGTTGATTCTTGCATCTTATGGCAAAATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCAGTCCCTTTTATGTTGATTCTTGCATCTTATGGCAAAATCA  730

seq1  TTGCCACCATTCTGAAGTTGCCAACAGCCACAGGACGGGCAAAAGCCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCATTCTGAAGTTGCCAACAGCCACAGGACGGGCAAAAGCCTTC  780

seq1  TCAACATGTTCTTCCCACTTGCTTGTGGTGTTTTTGTTTTTTGGATCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGTTCTTCCCACTTGCTTGTGGTGTTTTTGTTTTTTGGATCAGC  830

seq1  TACTATTACCTACTTGAGGCCAAAGTCCACCCATTCTCCAGGAACTGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTACCTACTTGAGGCCAAAGTCCACCCATTCTCCAGGAACTGACA  880

seq1  AACTATTCTCTCTGTTTTACAGCATTGTGACTCCCATGTTAAATCCTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCTCTCTGTTTTACAGCATTGTGACTCCCATGTTAAATCCTCTG  930

seq1  ATATACAGTCTTAGAAACAAGGAGGTGATTGCTGCACTGAGAAAATTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGTCTTAGAAACAAGGAGGTGATTGCTGCACTGAGAAAATTGTT  980

seq1  ACGTATCAAGTAGTGCTTAGAGCTCTGGAACAAATGATGAATTGATTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATCAAGTAGTGCTTAGAGCTCTGGAACAAATGATGAATTGATTCTT  1030

seq1  AACACAGTTACTGAAGAAAAGCATCAGCTTTTGTTCTTCTCATGGGAGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTTACTGAAGAAAAGCATCAGCTTTTGTTCTTCTCATGGGAGTA  1080

seq1  TAATCAGTTTATGCTTCTATAATGCCTGTGCTGCTTTGAGTAATAGCCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTTTATGCTTCTATAATGCCTGTGCTGCTTTGAGTAATAGCCTG  1130

seq1  AAATATATTCTCTTTTGAAACAATCTATACATGCAAATATGTCTGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTCTCTTTTGAAACAATCTATACATGCAAATATGTCTGAATTC  1180

seq1: chr13_108771478_108771849
seq2: B6Ng01-273I05.g_903_958 (reverse)

seq1  GTGTCTGTCCGGTAAGCCACCTTGGCTGTCCACCCAGGCTCTTCTGAGAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGTTGATCCTGAAGAGAGGTTCTTGACTTGATTTCTGCTTGGGTTGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGACCAGTTAGATTTTTTGTACATTGATCCTTTGTGGATGCTTGAAATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCAGGTGTCCTGCTGGGAGATACAGAGATGATTATAATTCTGTCTCTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAGGATGGTACAGTGCGCTAGGAGAGGCAGCCACCGGAAGCAGAGGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTTCAGTGGCTGCATCCCAGCAACTATTCCCTAAATCTTCTTTCCAAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGGATCTTATGTTCCAGAATTATC-CTCTCTCTCTCTCTCTCACACACAC  349
                          | || |||||||||||||||||||||||||
seq2  -------------------GTGTCTCTCTCTCTCTCTCTCTCACACACAC  31

seq1  ACACACACAC--ATGCACACACACA  372
      ||| ||||||  ||||||| |||||
seq2  ACATACACACCTATGCACAGACACA  56