BAC Information

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BAC

Clone NameB6Ng01-273L23
Chromosome2 (Build37)
Map Location 31,685,015 - 31,836,790
singlet/doubletdoublet
Overlap geneFibcd1, Lamc3, 2810003C17Rik, Nup214
Upstream genePrrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274
Downstream geneA130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273L23.bB6Ng01-273L23.g
ACCGA075239GA075240
length7681,122
definitionB6Ng01-273L23.b B6Ng01-273L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,685,015 - 31,685,782)(31,835,651 - 31,836,790)
sequence
gaattcatttgggccccagaaggtacccaaccccatgggcctaccactca
catgtaccactgtctcctgactcagaccctcttacaacagatgggtcagc
aatacaaagtagccttcgtccagagcaagcctggccactccgcgaactga
gccctctctgtccaccatcaccagatcgctagactaagatcagggcctct
ccagtgaccctcaaccttgacacaagccagctcccttgtccttctgccct
ctcagctgagagcttaaaactctgcctcagtcccaaatggctccctgtgg
ctgatgctctagcaattaattgttcagtagcaattaattgcattgacttg
cctcagaaggcctggacgtcccctggccaggctggctgggtagcagaggc
aaacctcttgccctctctaggctaccctgccagcctttgggaatagaagg
ggcatggggcaatggcaggcagggaagtggtattcagactgcaaagagcc
tctggggctgagcccagtcctgcccactctggtctctagaaggcacactg
tgatggaggagcccgcccaggggcctgaggcccagcacagcatccagtcc
actggggaggaccatgcagtgttggtgcctgaagctgggtggttttgacg
gggaacctaatgaggatggatgggctgagagaggccagcaccttcccaaa
caacaattgaacatccaggagggagagagagagagagagagagagagaga
gagatagacagaaggggg
gaattccaggacagccaggactatacagagaaaccctgtctcaaaaaaac
aaacaaacaaacaaacacccatcgcacactgcagtggcctagcacttagg
aggcgaaggcaggactaaatttgaagatgaactggacacatactgagatc
acatctcaaaaagatagagtggaaggaagaggagggactagaaatttttc
tactaaaatatcatggtttctaaatggtaggattaaaacttctttctttt
taaaggagaaaataaactgattgtgaagtgaaagaaatacagcatagtga
agggccacatttaactttaaaggaaaaccaggaacagtgcatgtccacat
gggtgatctgcatgagcgtccatgaaagggaggagaccagactacacaca
acagtggcaactctggagggacacactgagggacagaacaaagggggtcc
atcttctccattcacagagagactcagtatgatgactataaataactttt
tacttattgtgtactgctaaggattgaacagaaggccccacacatgctag
gcaagcactctaacacaggcattcctaatcacaaactgcttattaatacc
aaaaaagaaaagaagtcacaaagatgttcccaaaccacccccacgagtgg
tgaagtaggaagagttctccagtgcagagcagtcactcacaggaaggtac
tggaccacagttccattctgctttcctactgccagctgctttcctttggg
gctccagcatactggaaagaaaatgctgccaattaaaaaaaccaaagaaa
agaaagcgagccccaagatctagacagctacaccaccaccaccaccacca
ccaccaccaccaccatggaaaggccaggagaccgtccccaggcagagcag
agagagtacaaccatcttagcaagacaagcaattagacttcatcccaggc
cattaactgagagccaagaatgcttttccagaaaattttgcaagacaaga
gagtggagtctttaaagggtcaagatcacttgtgtgtcccattgttactc
tagtgcttacacgggtacaatgctttcgaatgccactctttagactagaa
acatatttctcaaaatccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31685015_31685782
seq2: B6Ng01-273L23.b_47_814

seq1  GAATTCATTTGGGCCCCAGAAGGTACCCAACCCCATGGGCCTACCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGGCCCCAGAAGGTACCCAACCCCATGGGCCTACCACTCA  50

seq1  CATGTACCACTGTCTCCTGACTCAGACCCTCTTACAACAGATGGGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCACTGTCTCCTGACTCAGACCCTCTTACAACAGATGGGTCAGC  100

seq1  AATACAAAGTAGCCTTCGTCCAGAGCAAGCCTGGCCACTCCGCGAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGTAGCCTTCGTCCAGAGCAAGCCTGGCCACTCCGCGAACTGA  150

seq1  GCCCTCTCTGTCCACCATCACCAGATCGCTAGACTAAGATCAGGGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTGTCCACCATCACCAGATCGCTAGACTAAGATCAGGGCCTCT  200

seq1  CCAGTGACCCTCAACCTTGACACAAGCCAGCTCCCTTGTCCTTCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACCCTCAACCTTGACACAAGCCAGCTCCCTTGTCCTTCTGCCCT  250

seq1  CTCAGCTGAGAGCTTAAAACTCTGCCTCAGTCCCAAATGGCTCCCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAGAGCTTAAAACTCTGCCTCAGTCCCAAATGGCTCCCTGTGG  300

seq1  CTGATGCTCTAGCAATTAATTGTTCAGTAGCAATTAATTGCATTGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTCTAGCAATTAATTGTTCAGTAGCAATTAATTGCATTGACTTG  350

seq1  CCTCAGAAGGCCTGGACGTCCCCTGGCCAGGCTGGCTGGGTAGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGGCCTGGACGTCCCCTGGCCAGGCTGGCTGGGTAGCAGAGGC  400

seq1  AAACCTCTTGCCCTCTCTAGGCTACCCTGCCAGCCTTTGGGAATAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTTGCCCTCTCTAGGCTACCCTGCCAGCCTTTGGGAATAGAAGG  450

seq1  GGCATGGGGCAATGGCAGGCAGGGAAGTGGTATTCAGACTGCAAAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGGCAATGGCAGGCAGGGAAGTGGTATTCAGACTGCAAAGAGCC  500

seq1  TCTGGGGCTGAGCCCAGTCCTGCCCACTCTGGTCTCTAGAAGGCACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCTGAGCCCAGTCCTGCCCACTCTGGTCTCTAGAAGGCACACTG  550

seq1  TGATGGAGGAGCCCGCCCAGGGGCCTGAGGCCCAGCACAGCATCCAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGAGCCCGCCCAGGGGCCTGAGGCCCAGCACAGCATCCAGTCC  600

seq1  ACTGGGGAGGACCATGCAGTGTTGGTGCCTGAAGCTGGGTGGTTTTGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGACCATGCAGTGTTGGTGCCTGAAGCTGGGTGGTTTTGACG  650

seq1  GGGAACCTAATGAGGATGGATGGGCTGAGAGAGGCCAGCACCTTCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTAATGAGGATGGATGGGCTGAGAGAGGCCAGCACCTTCCCAAA  700

seq1  CAACAATTGAACATCCAGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTGAACATCCAGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA  750

seq1  GAGAGAGAGAGAAGGGGG  768
      |||| ||| |||||||||
seq2  GAGATAGACAGAAGGGGG  768

seq1: chr2_31835651_31836790
seq2: B6Ng01-273L23.g_67_1188 (reverse)

seq1  AACTGGATTTTTGAGAATAATTGTTTCTAAGTCTAAAAGAGTGGCCATCT  50
      ||||||| ||||||||| |  ||||||| ||||| ||||||||| |||  
seq2  AACTGGA-TTTTGAGAA-ATATGTTTCT-AGTCT-AAAGAGTGG-CATTC  45

seq1  GAAAGCCATTTGTACCCCGTGTAAAGCACTAGAAGTAACAAATGGGAACA  100
      ||||||   ||||| ||||||| ||||||||| |||||| |||||||   
seq2  GAAAGC--ATTGTA-CCCGTGT-AAGCACTAG-AGTAAC-AATGGGACAC  89

seq1  ACACAGTGATTCCTTGACCCTTTAAAGACCTCCACTCTCCTTGTCTTGCA  150
      ||| ||||||  |||||||||||||||| ||||||||| |||||||||||
seq2  ACA-AGTGAT--CTTGACCCTTTAAAGA-CTCCACTCT-CTTGTCTTGCA  134

seq1  AAATTTTTCTGGAAAAGCATTCTTGGCTCTCAGTTAATGGCCTGGGATGA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-TTTTCTGGAAAAGCATTCTTGGCTCTCAGTTAATGGCCTGGGATGA  183

seq1  AGTCCTAATTTGCTTGTCTTGCTAAGATGGTTGTACTCTCTCTGCTCTGC  250
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGT-CTAA-TTGCTTGTCTTGCTAAGATGGTTGTACTCTCTCTGCTCTGC  231

seq1  CTGGGGACGGTCTCCTGGCC-TTCCATGGTGGTGGTGGTGGTGGTGGTGG  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGGGGACGGTCTCCTGGCCTTTCCATGGTGGTGGTGGTGGTGGTGGTGG  281

seq1  TGGTGGTGGTGTAGCTGTCTAGATCTTGGGGCTCGCTTTCTTTTCTTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGTGTAGCTGTCTAGATCTTGGGGCTCGCTTTCTTTTCTTTGG  331

seq1  TTTTTTTAATTGGCAGCATTTTCTTTCCAGTATGCTGGAGCCCCAAAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTGGCAGCATTTTCTTTCCAGTATGCTGGAGCCCCAAAGGA  381

seq1  AAGCAGCTGGCAGTAGGAAAGCAGAATGGAACTGTGGTCCAGTACCTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGGCAGTAGGAAAGCAGAATGGAACTGTGGTCCAGTACCTTCC  431

seq1  TGTGAGTGACTGCTCTGCACTGGAGAACTCTTCCTACTTCACCACTCGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGACTGCTCTGCACTGGAGAACTCTTCCTACTTCACCACTCGTG  481

seq1  GGGGTGGTTTGGGAACATCTTTGTGACTTCTTTTCTTTTTTGGTATTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTTTGGGAACATCTTTGTGACTTCTTTTCTTTTTTGGTATTAAT  531

seq1  AAGCAGTTTGTGATTAGGAATGCCTGTGTTAGAGTGCTTGCCTAGCATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGTGATTAGGAATGCCTGTGTTAGAGTGCTTGCCTAGCATGT  581

seq1  GTGGGGCCTTCTGTTCAATCCTTAGCAGTACACAATAAGTAAAAAGTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTTCTGTTCAATCCTTAGCAGTACACAATAAGTAAAAAGTTAT  631

seq1  TTATAGTCATCATACTGAGTCTCTCTGTGAATGGAGAAGATGGACCCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTCATCATACTGAGTCTCTCTGTGAATGGAGAAGATGGACCCCCT  681

seq1  TTGTTCTGTCCCTCAGTGTGTCCCTCCAGAGTTGCCACTGTTGTGTGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTCCCTCAGTGTGTCCCTCCAGAGTTGCCACTGTTGTGTGTAG  731

seq1  TCTGGTCTCCTCCCTTTCATGGACGCTCATGCAGATCACCCATGTGGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCCTCCCTTTCATGGACGCTCATGCAGATCACCCATGTGGACA  781

seq1  TGCACTGTTCCTGGTTTTCCTTTAAAGTTAAATGTGGCCCTTCACTATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTCCTGGTTTTCCTTTAAAGTTAAATGTGGCCCTTCACTATGC  831

seq1  TGTATTTCTTTCACTTCACAATCAGTTTATTTTCTCCTTTAAAAAGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTTTCACTTCACAATCAGTTTATTTTCTCCTTTAAAAAGAAAG  881

seq1  AAGTTTTAATCCTACCATTTAGAAACCATGATATTTTAGTAGAAAAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAATCCTACCATTTAGAAACCATGATATTTTAGTAGAAAAATTT  931

seq1  CTAGTCCCTCCTCTTCCTTCCACTCTATCTTTTTGAGATGTGATCTCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCCTCCTCTTCCTTCCACTCTATCTTTTTGAGATGTGATCTCAGT  981

seq1  ATGTGTCCAGTTCATCTTCAAATTTAGTCCTGCCTTCGCCTCCTAAGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCAGTTCATCTTCAAATTTAGTCCTGCCTTCGCCTCCTAAGTGC  1031

seq1  TAGGCCACTGCAGTGTGCGATGGGTGTTTGTTTGTTTGTTTGTTTTTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACTGCAGTGTGCGATGGGTGTTTGTTTGTTTGTTTGTTTTTTTG  1081

seq1  AGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAATTC  1122