BAC Information

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BAC

Clone NameB6Ng01-275P20
Chromosome2 (Build37)1 (Build37)
Map Location 141,758,854 - 141,760,029126,364,709 - 126,365,126
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275P20.bB6Ng01-275P20.g
ACCGA076879GA076880
length1,168241
definitionB6Ng01-275P20.b B6Ng01-275P20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(141,758,854 - 141,760,029)(126,364,709 - 126,365,126)
sequence
gaattcttttcaccagtggaaaataattcttcattgtcccttttattcaa
cattcatgggactagctgaagattaaaacaagtggctgtatcatactagg
aattttaacatacatttctcctcaattcaaagatgggtctattgagcatt
tccggggcaacctgagtaattgcccattgatgtctcacactaccattttc
ctgacctctttctttttactggacaatgtcttgaatttttagagcaccat
gactcagaagagataggacttaaggaaataaaatatataaactcactgtt
ttagaggcctttagtacaagagcctgttttatagaatgagttctttctgg
aggccctaagagagcatctcctctaaaccttgcttctaggttctagtgct
tctaggtaactgatataatctctcagtccgtggctatgtaactcctatct
ctccttaaagttctctgttatttctattttcaagtctctttataaagaca
tttagtattgcatttaatctagaatgagctcatttttttaatgctcagct
aaatgatatatgcaaggatctattttctaaatatagttatattgggaatg
tcattcaacttactacagatattccttgctgtcttcaaatcttcaagtct
tcaattctgccttgccttgagctatgagtgattcactgtgcttggctttg
gattttgaggtgaccagtagaaataccatgggctgttcatacatcatgat
aagatggtattgcaactgaacacaatagaccacctacagggccactgctt
accttaatcccctttctactgctgttacaaaacaccacaagcaaggcagc
taataaaagaaagcttttaactgggcttgcagttccagagcactagattc
catgatggcaggcccaaagcatggtggcaggagagctcatacctcaacta
taagatagaggcagaatacatattgggaacagcactgagagtgattggaa
atctaaagtctggccccagagacatgtgtcttccagaaagaccacaccat
ttatcctccccaaaggagtttcacactgggggagcagtatttcaagatga
gcctatgaggcaatctatggcagtcacaattcctcctttttccgtgcctt
ttctccacaggatgctgc

tctttgtctagaacttttatattatttcagaaaataacaatcattttaca
ataaatgatagggtgcagagagatggctcatctttccagagtactgtgtg
ttttgggggagggggggatgagaaacacacagagagataaaaagaaagac
agacagagaaagaagcacagagagagattgagagagagagagagagacag
acagacagacttttaaacattttttttagtttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141758854_141760029
seq2: B6Ng01-275P20.b_47_1214

seq1  GAATTCTTTTCACCAGTGGAAAATAATTCTTCATTGTCCCTTTTATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCACCAGTGGAAAATAATTCTTCATTGTCCCTTTTATTCAA  50

seq1  CATTCATGGGACTAGCTGAAGATTAAAACAAGTGGCTGTATCATACTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGGACTAGCTGAAGATTAAAACAAGTGGCTGTATCATACTAGG  100

seq1  AATTTTAACATACATTTCTCCTCAATTCAAAGATGGGTCTATTGAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACATACATTTCTCCTCAATTCAAAGATGGGTCTATTGAGCATT  150

seq1  TCCGGGGCAACCTGAGTAATTGCCCATTGATGTCTCACACTACCATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGCAACCTGAGTAATTGCCCATTGATGTCTCACACTACCATTTTC  200

seq1  CTGACCTCTTTCTTTTTACTGGACAATGTCTTGAATTTTTAGAGCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTTTCTTTTTACTGGACAATGTCTTGAATTTTTAGAGCACCAT  250

seq1  GACTCAGAAGAGATAGGACTTAAGGAAATAAAATATATAAACTCACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAAGAGATAGGACTTAAGGAAATAAAATATATAAACTCACTGTT  300

seq1  TTAGAGGCCTTTAGTACAAGAGCCTGTTTTATAGAATGAGTTCTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGCCTTTAGTACAAGAGCCTGTTTTATAGAATGAGTTCTTTCTGG  350

seq1  AGGCCCTAAGAGAGCATCTCCTCTAAACCTTGCTTCTAGGTTCTAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAAGAGAGCATCTCCTCTAAACCTTGCTTCTAGGTTCTAGTGCT  400

seq1  TCTAGGTAACTGATATAATCTCTCAGTCCGTGGCTATGTAACTCCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTAACTGATATAATCTCTCAGTCCGTGGCTATGTAACTCCTATCT  450

seq1  CTCCTTAAAGTTCTCTGTTATTTCTATTTTCAAGTCTCTTTATAAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAGTTCTCTGTTATTTCTATTTTCAAGTCTCTTTATAAAGACA  500

seq1  TTTAGTATTGCATTTAATCTAGAATGAGCTCATTTTTTTAATGCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTGCATTTAATCTAGAATGAGCTCATTTTTTTAATGCTCAGCT  550

seq1  AAATGATATATGCAAGGATCTATTTTCTAAATATAGTTATATTGGGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATATGCAAGGATCTATTTTCTAAATATAGTTATATTGGGAATG  600

seq1  TCATTCAACTTACTACAGATATTCCTTGCTGTCTTCAAATCTTCAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACTTACTACAGATATTCCTTGCTGTCTTCAAATCTTCAAGTCT  650

seq1  TCAATTCTGCCTTGCCTTGAGCTATGAGTGATTCACTGTGCTTGGCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTGCCTTGCCTTGAGCTATGAGTGATTCACTGTGCTTGGCTTTG  700

seq1  GATTTTGAGGTGACCAGTAGAAATACCATGGGCTGTTCATACATCATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAGGTGACCAGTAGAAATACCATGGGCTGTTCATACATCATGAT  750

seq1  AAGATGGTATTGCAACTGAACACAATAGACCACCTACAGGGCCACTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTATTGCAACTGAACACAATAGACCACCTACAGGGCCACTGCTT  800

seq1  ACCTTAATCCCCTTTCTACTGCTGTTACAAAACACCACAAGCAAGGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATCCCCTTTCTACTGCTGTTACAAAACACCACAAGCAAGGCAGC  850

seq1  TAATAAAAGAAAGCTTTTAACTGGGCTTGCAGTTCCAGAGCACTAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGAAAGCTTTTAACTGGGCTTGCAGTTCCAGAGCACTAGATTC  900

seq1  CATGATGGCAGGGCCAAAGCATGGTGGCAGGAGAGCTCATACCTCAAACT  950
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  CATGATGGCAGGCCCAAAGCATGGTGGCAGGAGAGCTCATACCTC-AACT  949

seq1  ATAAGATAGAGGCAGAATACATATTGGGAACAGCACTGAGAGTGATTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAGAGGCAGAATACATATTGGGAACAGCACTGAGAGTGATTGGA  999

seq1  AATCTTAAAGTCTGGCCCCAGAGACATGTGTCTTCCAGAAAGACCACACC  1050
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATC-TAAAGTCTGGCCCCAGAGACATGTGTCTTCCAGAAAGACCACACC  1048

seq1  ATTTAATCCTCCCCAAA-GAGTTTCACACT-GGGGAGCAAGTATTCAAAG  1098
      |||| |||||||||||| |||||||||||| ||||||| ||||||  |||
seq2  ATTT-ATCCTCCCCAAAGGAGTTTCACACTGGGGGAGC-AGTATTTCAAG  1096

seq1  ATGAGCCTATGAGGGCAATTCTTAATGCAAGTCACAATTCTTCTTTTCTG  1148
      |||||||||||| ||||| |||  |||  ||||||||||| || ||| | 
seq2  ATGAGCCTATGA-GGCAA-TCT--ATGGCAGTCACAATTCCTCCTTTTTC  1142

seq1  GTGGTCTTGTTCTCACACAGGATGCTGC  1176
         | ||| ||||| |||||||||||||
seq2  CGTGCCTT-TTCTC-CACAGGATGCTGC  1168


seq1: chr1_126364709_126365126
seq2: B6Ng01-275P20.g_195_311 (reverse)

seq1  AAAAAAAAAAAACTAAAAGCTAAAAGCTAAAAAAAATTAGAAGAAATATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGCTTCTATACACATGTGCCCCACTAAAATAAAAGCTAGAAGATATAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAGTAGCTTAAGCAGAGACATTACAAGGAACAGTATCAAAAATGTAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAAGTCTTCACACACACGCTCGTGCATGCGGGCGCGCGCGCGCACACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CACAAAGTCAAGGACCAGATAGACTTAGTGATTTTATCAAACTTTTAAAA  300
         |||   ||     | | | ||| |        |  |||  |||||||
seq2  ---AAA---AA-----AAAAAAACTAA--------AAAAAATGTTTAAAA  31

seq1  TGTGTATGTCTGTCTAGCTGTCTGTTTCTGTCTCTGTGTCTGTCTCTATG  350
             ||||||    |||||||| ||| ||||    ||| |||| || 
seq2  -------GTCTGT----CTGTCTGTCTCTCTCTC----TCTCTCTCAATC  66

seq1  TGTCTCTCTCCTTGTCTCTCCATGTGTTTGTCTCTCTGTCAATCTCTCTC  400
      | ||||| | ||| | ||||    ||| ||||| ||| |  |||      
seq2  TCTCTCTGTGCTTCTTTCTC----TGTCTGTCTTTCTTTTTATC------  106

seq1  CCTCCCTTCTCTGTGTGT  418
             |||||||||||
seq2  -------TCTCTGTGTGT  117


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