BAC Information

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BAC

Clone NameB6Ng01-276A12
Chromosome2 (Build37)
Map Location 17,080,141 - 17,223,766
singlet/doubletdoublet
Overlap genenone
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A12.bB6Ng01-276A12.g
ACCGA076911GA076912
length1,1591,082
definitionB6Ng01-276A12.b B6Ng01-276A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,222,611 - 17,223,766)(17,080,141 - 17,081,209)
sequence
gaattcatccaggcaaatatgagcaagcctagaagtcgtgttattcagta
gaagctgtgttgtatttcctgcttgtaaaacaagcacacccttgacttgg
gggaatgtcaggtaaataaggtcctgtgattgaaaccacctagtttggtg
gatttggatctggttttttaactgcagtgatggggcctgatgagttgccc
aaatgaacttcagaagttgaaggggcagggggagtcatggtggctgggca
ttggtcttgcacacccacagccttggcaggtgagaggtgccagaaagacc
attaaagtggcactttccagtttctggaacagcaacagtgctccaagtag
tgtgggtgtcagttgctattactgtgttttcccaggatagtggtagatca
tcacattgtatttggatctccagagaaagatcaaaaagtgatggacacag
aaaaacagacaacagctgctcctgtaagctatgaaaacacaactatggct
tagatgctttagaaaaacaggaagtacagagccatcttgggaactctaaa
cctagaagagagaacaagaatgaggtgatactgaatccaattcaacttgt
cttgtttcctgcattcaaatgagccaaagctgttggactttccttcagac
tttggcaggcctccttcagaagtaagctagtgtccttaacaaaggtcaag
atacttaaaattcagtaaaagagtccatgagtgaaggaaccaaataagct
ccactccctagaacatatgtatatatttacataaagggaaccattggata
tgacactgtgatggttgacattgtcagtttgacagtatctagaatcacgc
atgagatatgctaacaagggattttgttggttaggtttattagacttgga
aaggatatatatatatatatctcacacacacacacatacacacacacgag
cccttcagtgatatgagcatcaatctaacaagcctattgatggttgtagt
aatttttcagtacctctttgttgaataatttaattatcatcaaaaagaaa
aataattttcagatatatatggctttttatggcttttaatggtttatcta
cctcaaggtgcctaggccacctaatagtgactcatccatgagaagcaatt
taatgcctg

gaattcttgcctgagaatatgatttttcctcctgggctgggtgtcttatt
ccaacttggcccaggcaatgtccttagctttttgccagaacaaatttgtc
actcacagtaggaaaactattgctaaggctcaactgactctatatccttc
tttgttctgcagaaaaatgctgacatcaagccagcttggaggctgcagca
ctgaccactgacaggctggagcgaatcaagccccaattcagcctttgctg
cctggagaccacctgtctctctctggatgttttctcagtggtagaggaaa
atatggctctgtgagagtcatcaccatacaaattcaatatttatatgttt
cccatatgataggcacggaattactattcttagaagaatgaaagaaatta
gagagtgatttttgtagttatcaaatttatctgaagatcatgtttttctc
agtgctgtaatctacttcaaggaaataatggcagccactgttatcgttga
aatatacaacacccatgttctccacatacaaagctcaagtgttaaaggct
aggttgccagttaatggagatttggagctgttgaagcaagaggactctga
attcattaaccacattgaagcagtcatagccaaaggagttttaggaacct
acagccagttggagaagtaggcacagaggggactgatgttgaaagatata
cctggtcttgaactcttccttctactttctcatcaccatgaggcatctct
gaggcctctgcaatgactcctgccttatctcagacccaaagtcagccaac
tatagactaaaacctctgaatccatgagccaaggtgagtgtattcccctt
tacattgttttccttggggtgtttgtcacagtgatacaaggacacttttt
gagatcatctcaaaataaagtatgggcaagctcccccaatttcgtttcaa
accaaggggcacaagtaatgggtttcaagaagtacagcaaactctatggg
tccttgtcattgggaaagaatgctttcaagtttaaatgtctaacaggagt
ttccaagggcagtaagtggaggtgagccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_17222611_17223766
seq2: B6Ng01-276A12.b_45_1203 (reverse)

seq1  CAGGCATTAAA-TGCTTCTCAATGTGATGATGTCACTA-TAGGTGCCCCT  48
      ||||||||||| |||||||| ||| ||||| ||||||| ||||||  |||
seq2  CAGGCATTAAATTGCTTCTC-ATG-GATGA-GTCACTATTAGGTG-GCCT  46

seq1  AGGGCACC-TGAGTAAGATTAAACA-TAAAAGCCAT-AAAAGCC--ATAT  93
      | |||||| ||||  |||| || || |||||||||| |||||||  ||||
seq2  A-GGCACCTTGAGGTAGATAAACCATTAAAAGCCATAAAAAGCCATATAT  95

seq1  ATCTGAAAATTATTTT--CTTTTGATGATAATTAAATTATTCCAACAAAA  141
      ||||||||||||||||   |||||||||||||||||||||| |||| |||
seq2  ATCTGAAAATTATTTTTCTTTTTGATGATAATTAAATTATT-CAAC-AAA  143

seq1  GAGGTACTGAAAAATTACTACCACCATCAATAGGCTTGTTTAGATTGATG  191
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GAGGTACTGAAAAATTACTACAACCATCAATAGGCTTG-TTAGATTGATG  192

seq1  CTCATATCACTGAA-GGCTCGTGTGTGTGTATGTGTGTGTGTGTGAGATA  240
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCATATCACTGAAGGGCTCGTGTGTGTGTATGTGTGTGTGTGTGAGATA  242

seq1  TATATATATATATCC-TTCCAAGTCTAATAAACCTAACCAACAAAATCCC  289
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATATATATATATCCTTTCCAAGTCTAATAAACCTAACCAACAAAATCCC  292

seq1  TTGTTAGCATATCTCATGCGTGATTCTAGATACTGTCAAACTGACAATGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCATATCTCATGCGTGATTCTAGATACTGTCAAACTGACAATGT  342

seq1  CAACCATCACAGTGTCATATCCAATGGTTCCCTTTATGTAAATATATACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCACAGTGTCATATCCAATGGTTCCCTTTATGTAAATATATACA  392

seq1  TATGTTCTAGGGAGTGGAGCTTATTTGGTTCCTTCACTCATGGACTCTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTAGGGAGTGGAGCTTATTTGGTTCCTTCACTCATGGACTCTTT  442

seq1  TACTGAATTTTAAGTATCTTGACCTTTGTTAAGGACACTAGCTTACTTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTTTAAGTATCTTGACCTTTGTTAAGGACACTAGCTTACTTCT  492

seq1  GAAGGAGGCCTGCCAAAGTCTGAAGGAAAGTCCAACAGCTTTGGCTCATT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGCCTGCCAAAGTCTGAAGGAAAGTCCAACAGCTTTGGCTCATT  542

seq1  TGAATGCAGGAAACAAGACAAGTTGAATTGGATTCAGTATCACCTCATTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAGGAAACAAGACAAGTTGAATTGGATTCAGTATCACCTCATTC  592

seq1  TTGTTCTCTCTTCTAGGTTTAGAGTTCCCAAGATGGCTCTGTACTTCCTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTCTTCTAGGTTTAGAGTTCCCAAGATGGCTCTGTACTTCCTG  642

seq1  TTTTTCTAAAGCATCTAAGCCATAGTTGTGTTTTCATAGCTTACAGGAGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAAGCATCTAAGCCATAGTTGTGTTTTCATAGCTTACAGGAGC  692

seq1  AGCTGTTGTCTGTTTTTCTGTGTCCATCACTTTTTGATCTTTCTCTGGAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGTCTGTTTTTCTGTGTCCATCACTTTTTGATCTTTCTCTGGAG  742

seq1  ATCCAAATACAATGTGATGATCTACCACTATCCTGGGAAAACACAGTAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATACAATGTGATGATCTACCACTATCCTGGGAAAACACAGTAAT  792

seq1  AGCAACTGACACCCACACTACTTGGAGCACTGTTGCTGTTCCAGAAACTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGACACCCACACTACTTGGAGCACTGTTGCTGTTCCAGAAACTG  842

seq1  GAAAGTGCCACTTTAATGGTCTTTCTGGCACCTCTCACCTGCCAAGGCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCCACTTTAATGGTCTTTCTGGCACCTCTCACCTGCCAAGGCTG  892

seq1  TGGGTGTGCAAGACCAATGCCCAGCCACCATGACTCCCCCTGCCCCTTCA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGCAAGACCAATGCCCAGCCACCATGACTCCCCCTGCCCCTTCA  942

seq1  ACTTCTGAAGTTCATTTGGGCAACTCATCAGGCCCCATCACTGCAGTTAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAGTTCATTTGGGCAACTCATCAGGCCCCATCACTGCAGTTAA  992

seq1  AAAACCAGATCCAAATCCACCAAACTAGGTGGTTTCAATCACAGGACCTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGATCCAAATCCACCAAACTAGGTGGTTTCAATCACAGGACCTT  1042

seq1  ATTTACCTGACATTCCCCCAAGTCAAGGGTGTGCTTGTTTTACAAGCAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTGACATTCCCCCAAGTCAAGGGTGTGCTTGTTTTACAAGCAGG  1092

seq1  AAATACAACACAGCTTCTACTGAATAACACGACTTCTAGGCTTGCTCATA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACACAGCTTCTACTGAATAACACGACTTCTAGGCTTGCTCATA  1142

seq1  TTTGCCTGGATGAATTC  1156
      |||||||||||||||||
seq2  TTTGCCTGGATGAATTC  1159


seq1: chr2_17080141_17081209
seq2: B6Ng01-276A12.g_67_1148

seq1  GAATTCTTGCCTGAGAATATGATTTTTCCTCCTGGGCTGGGTGTCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTGAGAATATGATTTTTCCTCCTGGGCTGGGTGTCTTATT  50

seq1  CCAACTTGGCCCAGGCAATGTCCTTAGCTTTTTGCCAGAACAAATTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGGCCCAGGCAATGTCCTTAGCTTTTTGCCAGAACAAATTTGTC  100

seq1  ACTCACAGTAGGAAAACTATTGCTAAGGCTCAACTGACTCTATATCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGTAGGAAAACTATTGCTAAGGCTCAACTGACTCTATATCCTTC  150

seq1  TTTGTTCTGCAGAAAAATGCTGACATCAAGCCAGCTTGGAGGCTGCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGCAGAAAAATGCTGACATCAAGCCAGCTTGGAGGCTGCAGCA  200

seq1  CTGACCACTGACAGGCTGGAGCGAATCAAGCCCCAATTCAGCCTTTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACTGACAGGCTGGAGCGAATCAAGCCCCAATTCAGCCTTTGCTG  250

seq1  CCTGGAGACCACCTGTCTCTCTCTGGATGTTTTCTCAGTGGTAGAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACCACCTGTCTCTCTCTGGATGTTTTCTCAGTGGTAGAGGAAA  300

seq1  ATATGGCTCTGTGAGAGTCATCACCATACAAATTCAATATTTATATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTCTGTGAGAGTCATCACCATACAAATTCAATATTTATATGTTT  350

seq1  CCCATATGATAGGCACGGAATTACTATTCTTAGAAGAATGAAAGAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGATAGGCACGGAATTACTATTCTTAGAAGAATGAAAGAAATTA  400

seq1  GAGAGTGATTTTTGTAGTTATCAAATTTATCTGAAGATCATGTTTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGATTTTTGTAGTTATCAAATTTATCTGAAGATCATGTTTTTCTC  450

seq1  AGTGCTGTAATCTACTTCAAGGAAATAATGGCAGCCACTGTTATCGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTAATCTACTTCAAGGAAATAATGGCAGCCACTGTTATCGTTGA  500

seq1  AATATACAACACCCATGTTCTCCACATACAAAGCTCAAGTGTTAAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAACACCCATGTTCTCCACATACAAAGCTCAAGTGTTAAAGGCT  550

seq1  AGGTTGCCAGTTAATGGAGATTTGGAGCTGTTGAAGCAAGAGGACTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCAGTTAATGGAGATTTGGAGCTGTTGAAGCAAGAGGACTCTGA  600

seq1  ATTCATTAACCACATTGAAGCAGTCATAGCCAAAGGAGTTTTAGGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAACCACATTGAAGCAGTCATAGCCAAAGGAGTTTTAGGAACCT  650

seq1  ACAGCCAGTTGGAGAAGTAGGCACAGAGGGGACTGATGTTGAAAGATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGTTGGAGAAGTAGGCACAGAGGGGACTGATGTTGAAAGATATA  700

seq1  CCTGGTCTTGAACTCTTCCTTCTACTTTCTCATCACCATGAGGCATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTTGAACTCTTCCTTCTACTTTCTCATCACCATGAGGCATCTCT  750

seq1  GAGGCCTCTGCAATGACTCCTGCCTTATCTCAGACCCAAAGTCAGCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTGCAATGACTCCTGCCTTATCTCAGACCCAAAGTCAGCCAAC  800

seq1  TATAGACTAAAACCTCTGAATCCATGAGCCAAGGTGAGTGTATTCCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTAAAACCTCTGAATCCATGAGCCAAGGTGAGTGTATTCCCCTT  850

seq1  TACATTGTTTTCCTT-GGGTGTTTGTCACAGTGATACAAGGACAC-TTTT  898
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TACATTGTTTTCCTTGGGGTGTTTGTCACAGTGATACAAGGACACTTTTT  900

seq1  GAGATCATCTCAAA--TAAGTATGGGCAAGCTCCCCCAATTTCG-TTCAA  945
      ||||||||||||||   ||||||||||||||||||||||||||| |||||
seq2  GAGATCATCTCAAAATAAAGTATGGGCAAGCTCCCCCAATTTCGTTTCAA  950

seq1  ACCAA-GGGCACAAGTAAT-GGTTTCAAG-AGTACAGCAAACTCTATGGG  992
      ||||| ||||||||||||| ||||||||| ||||||||||||||||||||
seq2  ACCAAGGGGCACAAGTAATGGGTTTCAAGAAGTACAGCAAACTCTATGGG  1000

seq1  TCCTTGTCATTGGGAAAG-ATGC-TTCAAGTTTAAATGTCT-ACAGGAGT  1039
      |||||||||||||||||| |||| ||||||||||||||||| ||||||||
seq2  TCCTTGTCATTGGGAAAGAATGCTTTCAAGTTTAAATGTCTAACAGGAGT  1050

seq1  TTCCAA-GGCAGTAAGT-GAGGTGAGCCATAT  1069
      |||||| |||||||||| ||||||||||||||
seq2  TTCCAAGGGCAGTAAGTGGAGGTGAGCCATAT  1082


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