BAC Information

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BAC

Clone NameB6Ng01-276N18
Chromosome2 (Build37)
Map Location 114,620,808 - 114,760,847
singlet/doubletdoublet
Overlap geneLOC100043222
Upstream geneScg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N18.bB6Ng01-276N18.g
ACCGA077533GA077534
length8391,127
definitionB6Ng01-276N18.b B6Ng01-276N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,620,808 - 114,621,639)(114,759,702 - 114,760,847)
sequence
gaattctagtgatgcggaatggctatttcagaatctttgcttctgcttgc
tttttcaacatagctaaaagcacgtcttctctctttgttctgtaaccaag
tagctgttggaaagcatcatcctcttgccttttattgccctccttctcct
cccataagtgctttgaagcaatcatgtagcatccctctcaggtgccaaac
tcctcttcaattccatttgtaaccctgagctcttctcctcttccttactc
tctggtttctcatacttaacccatttcatggcttctctattagttctgta
ccaaaaatctccaaattgtttctgttcctatttcttctaattctacattt
tctgcttgagttgcaccatctattgctggagcttcaattgctacttaaat
gttggtaattttcacaactgaaacaaggttttactgcatgtaatttattg
attttgtcagtttgcttcccgtagtaaacggaagactccagaattttcca
attatgttgaaaaggtagaaaaagaacacacacacatgagacagagagag
agagacagacagagagagagagagagagagagagagagagagagagagag
agagagacagaaggagggaagaggggagaggggagtcagggctatagata
agctttaagacaaaaattagatgatgagatcccagaagacaaggggacaa
tgtcaaagatgcatttgaaagacttattcactttaagggactgaaaagtt
tgaagggtcccgtggtcctcaacatttatgcaagtctatatgacatttct
gctggtacagatatctaagtaagtctattcagtcacccg

gaattcagtcattgctacttattagattctcatcttttgttagagtctga
gcaaaatggaacaatgggcacatttagctaaatgattctgtaggggggaa
atgacaaaaggggagtcttacaggtagtgttaatgtatagcatgtgctta
tctgtgtgcatatgcaatcagattgagaagcagatcatttcttccttctt
aatactctaaataagtgccagaaatgagagactttttgtaaggttgaaat
atttcactaaacagaatctgttattgaccaattagcatcaattgtagctt
taaatgtgtataaacttactcagttctttgaacaatccctgacctaacat
agatcatgaaatttaaatgcatctcctggatatgagaattgaaacacagg
gatttttttgccatggctaagaaaggtcaaatgatattgaatttcatccc
tcacaattgcaaccttcatcaaagtgctttcattatctcatataataata
ttaatgataataataataattaatacatcccagcagagcgtatataggtt
tataatcaaaggcttgcatgcacaaataccacacacttgtatatcctttt
gtgctgcctacaaaagagaaagacaatcccccatttatcagtagctgtgt
gaaaggaggagatttatcattttaaaattttcatcgcagatggttttcat
tttaaaaggcagggaagcgattttttaaaatcattttccccctaatgcaa
ttgagccagacgtttctcgtaaatcttgttgctttagtagacaatactca
attctccaaactttatatgcaatatccagcttttttttctttgtctttag
atgtccatctcctggatatgagagtaaaagccgtaagaatggcggcatcg
ggcatcacactagccatcctggtcactttcttcttcctgtgctcaaggtt
tgggctagagttctctttgtactccagacatacaactgcatagtttaaaa
agacttttctccctctgtagtctttgataaatagacggaatggaatgata
tgcagtccatgccatgtctctagacgaccaggtacgcagttattccacta
gatcagtggtcagaccaagaaactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114620808_114621639
seq2: B6Ng01-276N18.b_45_883

seq1  GAATTCTAGTGATGCGGAATGGCTATTTCAGAATCTTTGCTTCTGCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGATGCGGAATGGCTATTTCAGAATCTTTGCTTCTGCTTGC  50

seq1  TTTTTCAACATAGCTAAAAGCACGTCTTCTCTCTTTGTTCTGTAACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACATAGCTAAAAGCACGTCTTCTCTCTTTGTTCTGTAACCAAG  100

seq1  TAGCTGTTGGAAAGCATCATCCTCTTGCCTTTTATTGCCCTCCTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTGGAAAGCATCATCCTCTTGCCTTTTATTGCCCTCCTTCTCCT  150

seq1  CCCATAAGTGCTTTGAAGCAATCATGTAGCATCCCTCTCAGGTGCCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGTGCTTTGAAGCAATCATGTAGCATCCCTCTCAGGTGCCAAAC  200

seq1  TCCTCTTCAATTCCATTTGTAACCCTGAGCTCTTCTCCTCTTCCTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCAATTCCATTTGTAACCCTGAGCTCTTCTCCTCTTCCTTACTC  250

seq1  TCTGGTTTCTCATACTTAACCCATTTCATGGCTTCTCTATTAGTTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTCATACTTAACCCATTTCATGGCTTCTCTATTAGTTCTGTA  300

seq1  CCAAAAATCTCCAAATTGTTTCTGTTCCTATTTCTTCTAATTCTACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATCTCCAAATTGTTTCTGTTCCTATTTCTTCTAATTCTACATTT  350

seq1  TCTGCTTGAGTTGCACCATCTATTGCTGGAGCTTCAATTGCTACTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGAGTTGCACCATCTATTGCTGGAGCTTCAATTGCTACTTAAAT  400

seq1  GTTGGTAATTTTCACAACTGAAACAAGGTTTTACTGCATGTAATTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAATTTTCACAACTGAAACAAGGTTTTACTGCATGTAATTTATTG  450

seq1  ATTTTGTCAGTTTGCTTCCCGTAGTAAACGGAAGACTCCAGAATTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCAGTTTGCTTCCCGTAGTAAACGGAAGACTCCAGAATTTTCCA  500

seq1  ATTATGTTGAAAAGGTAGAAAAAGAACACACACACATGAGACAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTGAAAAGGTAGAAAAAGAACACACACACATGAGACAGAGAGAG  550

seq1  AGAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600

seq1  AGAGAGACAGAAGGAGGGAAGAGGGGAGAGGGGAGTCAGGGCTATAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAAGGAGGGAAGAGGGGAGAGGGGAGTCAGGGCTATAGATA  650

seq1  AGCTTTAAGAC-AAAATTAGATGATGAGATCCCAGAAGACAAGGGGACAA  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAGACAAAAATTAGATGATGAGATCCCAGAAGACAAGGGGACAA  700

seq1  TGTCAAAGATGCATTTGAAAGACTTATTCACTTTAA-GGACTGAAAAGTT  748
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTCAAAGATGCATTTGAAAGACTTATTCACTTTAAGGGACTGAAAAGTT  750

seq1  TG-AGGGTCCCGT-GTCCTCAACA-TTATTCAAGTCTATATGACA-TTCT  794
      || |||||||||| |||||||||| |||| ||||||||||||||| ||||
seq2  TGAAGGGTCCCGTGGTCCTCAACATTTATGCAAGTCTATATGACATTTCT  800

seq1  GCT-GTTCAGATATCTAAGTAAGTCTATTCAGTCACCTG  832
      ||| || |||||||||||||||||||||||||||||| |
seq2  GCTGGTACAGATATCTAAGTAAGTCTATTCAGTCACCCG  839


seq1: chr2_114759702_114760847
seq2: B6Ng01-276N18.g_65_1191 (reverse)

seq1  GTGAGTTTTCTTTTGGCTCCTGACTCACTGATCATAGTGG-ATAACTGCG  49
      |||||||   | ||||   ||||| |||||||| |||||| |||||||||
seq2  GTGAGTT---TCTTGG--TCTGAC-CACTGATC-TAGTGGAATAACTGCG  43

seq1  TACTGTGTTCTGTCTAGAGACAT-GCATTGACTGGCATATACACTCATTT  98
      |||  || || |||||||||||| |||| |||| |||||| || ||  ||
seq2  TAC-CTGGTC-GTCTAGAGACATGGCATGGACT-GCATAT-CATTCCATT  89

seq1  CCCTTCTATTTATCAAAGACTTACAGAGGGAGAAAAGTCTTTTTAAAACT  148
       || |||||||||||||||| ||||||||||||||||||||||||||   
seq2  -CCGTCTATTTATCAAAGAC-TACAGAGGGAGAAAAGTCTTTTTAAA--C  135

seq1  TATGGCAGTTTGTTATTGTTCTGGAGTACAAAGAGGAACTTCTTAGCCAA  198
      ||| ||||||   |||   ||||||||||||||| |||| |||   ||||
seq2  TAT-GCAGTT--GTAT--GTCTGGAGTACAAAGA-GAAC-TCTAGCCCAA  178

seq1  ACCTTGAGCACAGGAAGAAGAAAGTGACCAGGATGGCTAGTGTGATGCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGCACAGGAAGAAGAAAGTGACCAGGATGGCTAGTGTGATGCCC  228

seq1  GATGCCGCCATTCTTACGGCTTTTACTCTCATATCCAGGAGATGGACATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCGCCATTCTTACGGCTTTTACTCTCATATCCAGGAGATGGACATC  278

seq1  TAAAGACAAAG-AAAAAAAGCTGGATATTGCATATAAAGTTTGGAGAATT  347
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAAGAAAAAAAAGCTGGATATTGCATATAAAGTTTGGAGAATT  328

seq1  GAGTATTGTCTACTAAAGCAACAAGATTTACGAGAAACGTCTGGCTCAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGTCTACTAAAGCAACAAGATTTACGAGAAACGTCTGGCTCAAT  378

seq1  TGCATTAGGGGGAAAATGATTTTAAAAAATCGCTTCCCTGCCTTTTAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGGGGGAAAATGATTTTAAAAAATCGCTTCCCTGCCTTTTAAAA  428

seq1  TGAAAACCATCTGCGATGAAAATTTTAAAATGATAAATCTCCTCCTTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCATCTGCGATGAAAATTTTAAAATGATAAATCTCCTCCTTTCA  478

seq1  CACAGCTACTGATAAATGGGGGATTGTCTTTCTCTTTTGTAGGCAGCACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTACTGATAAATGGGGGATTGTCTTTCTCTTTTGTAGGCAGCACA  528

seq1  AAAGGATATACAAGTGTGTGGTATTTGTGCATGCAAGCCTTTGATTATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATACAAGTGTGTGGTATTTGTGCATGCAAGCCTTTGATTATAA  578

seq1  ACCTATATACGCTCTGCTGGGATGTATTAATTATTATTATTATCATTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATACGCTCTGCTGGGATGTATTAATTATTATTATTATCATTAAT  628

seq1  ATTATTATATGAGATAATGAAAGCACTTTGATGAAGGTTGCAATTGTGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATGAGATAATGAAAGCACTTTGATGAAGGTTGCAATTGTGAG  678

seq1  GGATGAAATTCAATATCATTTGACCTTTCTTAGCCATGGCAAAAAAATCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAATTCAATATCATTTGACCTTTCTTAGCCATGGCAAAAAAATCC  728

seq1  CTGTGTTTCAATTCTCATATCCAGGAGATGCATTTAAATTTCATGATCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCAATTCTCATATCCAGGAGATGCATTTAAATTTCATGATCTA  778

seq1  TGTTAGGTCAGGGATTGTTCAAAGAACTGAGTAAGTTTATACACATTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTCAGGGATTGTTCAAAGAACTGAGTAAGTTTATACACATTTAA  828

seq1  AGCTACAATTGATGCTAATTGGTCAATAACAGATTCTGTTTAGTGAAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAATTGATGCTAATTGGTCAATAACAGATTCTGTTTAGTGAAATA  878

seq1  TTTCAACCTTACAAAAAGTCTCTCATTTCTGGCACTTATTTAGAGTATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCTTACAAAAAGTCTCTCATTTCTGGCACTTATTTAGAGTATTA  928

seq1  AGAAGGAAGAAATGATCTGCTTCTCAATCTGATTGCATATGCACACAGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGAAATGATCTGCTTCTCAATCTGATTGCATATGCACACAGAT  978

seq1  AAGCACATGCTATACATTAACACTACCTGTAAGACTCCCCTTTTGTCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGCTATACATTAACACTACCTGTAAGACTCCCCTTTTGTCATT  1028

seq1  TCCCCCCTACAGAATCATTTAGCTAAATGTGCCCATTGTTCCATTTTGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTACAGAATCATTTAGCTAAATGTGCCCATTGTTCCATTTTGCT  1078

seq1  CAGACTCTAACAAAAGATGAGAATCTAATAAGTAGCAATGACTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTAACAAAAGATGAGAATCTAATAAGTAGCAATGACTGAATTC  1127


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