BAC Information

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BAC

Clone NameB6Ng01-281N20
Chromosome2 (Build37)
Map Location 81,351,461 - 81,352,139
singlet/doubletsinglet
Overlap genenone
Upstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281N20.bB6Ng01-281N20.g
ACCGA081230GA081231
length1,2171,118
definitionB6Ng01-281N20.b B6Ng01-281N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagagctggaaagagcccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatgctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataattggatattagccccaaacct
aggattcccaagatataagatacaatttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatgggaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggaaccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaagaagctaaagggatctgcaacccta
taggtggaacaacattatggactacagtaccccgggagctcttgactcta
gctgcatatggtatcaaaaggatgggctagtcggcatcactggagggaag
gcccatggaactcgcaacttatattgtccagtacaggggactgcctagct
acagggaatgggtgggtctagggggaatcgtgctatgtgacggatagaag
tcgatcgggatcagcta
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cactttacttctgatagcttgtcctgaatttcatctagaatccgccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacacta
gaaaaaattcaaggccaaacatattccactttacttctgatagactgtct
tgaatttccttagaaagttcaagatcagacttacctcgtaaagctgtact
cactggtactctcgttccccagctgaaaagttctgaattcatacagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaattcggcaccaattgttattagacgcgttctcacgaccg
gccaggaaagacgcaacaaaccagaatcttctgcggcaaaactttattgc
ttacatcttcaggagcaagagtgtaagaagcaagagagagagagaacgaa
accccgtccctattaaggagaattctccttcgcctaggacgtgtcactcc
ctgattggctgcagcccatcggccgagttgacgtcacggggaaggcagag
cacaccctcggcacatgcgcagattatttgtttaccacttagaacacagc
tgtcagcgccatcttgtaacggcgaatgtgggcgcggctcccacatacct
ggaaagaaagaaatttcttctagggtggtctgtgtttttttctggttatt
ttctggatccatcactacatcttctatgaaatatcaatatctgcagtatt
ctctattgaaacacttagattcagattgttgtagtgaaaacatttatgca
tatcaaggtactgaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81351461_81352139
seq2: B6Ng01-281N20.g_516_1186

seq1  ACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGT  50

seq1  TGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCC  100

seq1  GCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTT  150

seq1  TTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGA  200

seq1  CCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAAACTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAAACTTTAT  250

seq1  TGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAGAGAGAGAGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAGAGAGAGAGAGAAC  300

seq1  GAAACCCCGTCCCTATTAAGGAGAATTCTCCTTCGCCTAGGACGTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCGTCCCTATTAAGGAGAATTCTCCTTCGCCTAGGACGTGTCAC  350

seq1  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCA  400

seq1  GAGCACACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450

seq1  AGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCC-ACAT  499

seq1  ACCTGGAAAGAAAGAAATTTCTTCTAGGGGTTGGTCTGTG--TTTTTCTG  548
      |||||||||||||||||||||||||||||  |||||||||  ||||||||
seq2  ACCTGGAAAGAAAGAAATTTCTTCTAGGG--TGGTCTGTGTTTTTTTCTG  547

seq1  GTTA-TTTCTGGATCCATCACTACAATCTCTATGAAATATCAAATAATCT  597
      |||| ||||||||||||||||||||   |||||||||||||||   ||||
seq2  GTTATTTTCTGGATCCATCACTACATCTTCTATGAAATATCAA--TATCT  595

seq1  GCAGTA-TCTCTATTGGAAAACACTTAGAATTTCAGATTG-TGTAGTGAA  645
      |||||| |||||||||  |||||||||||  ||||||||| ||||||| |
seq2  GCAGTATTCTCTATTG--AAACACTTAGA--TTCAGATTGTTGTAGTG-A  640

seq1  AAACAATTTTATGCATATCAAAGTACTGATATAT  679
      |||||  |||||||||||||| ||||||| ||||
seq2  AAACA--TTTATGCATATCAAGGTACTGA-ATAT  671