BAC Information

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BAC

Clone NameB6Ng01-282O02
Chromosome2 (Build37)
Map Location 112,954,161 - 112,955,233
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282O02.bB6Ng01-282O02.g
ACCGA081978GA081979
length1,1911,068
definitionB6Ng01-282O02.b B6Ng01-282O02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatatatgttggatattagtcccctatctgatttaggatagg
taaagatcctttcccaatctgttggtggtctttttgtcttattgacggtg
tcttttgccttgcagaaactttggagtttcattaggtcccatttgtcaat
tctcgatcttacagcacaagccattgctgttctgttcaggaatttttccc
ctgtgcccatatcttcaaggcttttccccactttctcctctataagtttc
agtgtctctggttttatgtgaagttccttgatccacttagatttgacctt
agtacaaggagataagtatggatcgattcgcattcttcttcataatatca
accagttgtgccagcaccatttgttgaaaatgctatctttcttccactgg
atggttttagctcccttgttgaagatcaagtggccataggtgtgtgggtt
catttctgggtcttcaattctattccattggtctacttgtctgtccatgt
agcatgcagtttttatcacaattgctctgtagtaaagctttaggtcaggg
atggtgattccaccagagattcttttatccttgagaagagattttgctat
cctaggttttttgttattccagatgaatttgcagattgctctttctaatt
tgttgaagaattaagttggactttatggggattgcattgaatctgtagat
tgcttttggcaacatagccatttttacaatgttgatcctgccaatccatg
agcatgggtgatctttccatcttctgagatcttctttaatttctttcttc
agagacttgaagttcttatcatacagatctttcacttcccttagttagag
tcacgccaggagacataacaacagatcctggagaaatccaaaacaccatc
agatccttctacaaaaggctatactcaacaaaactgggaaaaccctggac
gaaatggacaaatttctgggacagataccaggtaccaaagttaaatcagg
atcaagttaatgatctaaacagtcccatatcgcctaaagaaatagaagca
gtcaatattagttctctctagccaaaaaaagccaggaccagaatggttaa
gtgccagagttctaccagaccttcaaaggagatctatccagttcttgcat
aaacctaatgctcactatatatgaaagtatgatgaagtgac
gaattcttaaacgacactaattccaagacccctcactggtgactttacag
agtgtttggaatgccttctcctttattctagaacatccatgaagaaccct
ttcaaatattaataccacaatcccttgtggtattaaggccattaccaata
aggcataataaagttagaagaagagctagtcacttatagctaaagcatag
gacagagatgctctcatgttgaaagagtcaaggaagcatccagaatagtc
agatgtcagcaggggcaagaaaccaaggctgttgtacagatagaagcact
ggccttactagagaagaacattccatacagatgcactttcaacagtttgg
gtgagagtatttctccacatgactggcctgctctaagtcagaggtctgca
gggcacctcacttttcactcctatgacacacactatactcatctcaatcc
tacaagagagtgacatctcagtttgtcctaaaaattctgtggaaacacat
gacctccatgctggtgtcaggactttgtcctctgttctatcttctctcct
ctcttgaattccactacaacttggactgttctttctgctttggattcaga
gttctcttgtgtccttttggaaatcatacttgttttgcttctcttcctag
cattccttccttgagaagggtcttataatataataaactctggcccaaga
taggcatcacatgagagccatgtgagccagtgagacgagctcttgaacaa
cacaaatgtgtttttattcatgtttcctaagtgcaaaattgatttgcctt
ctcttttagggcacaaaggcccttttagaagaataaatgctagaattcaa
atatcctctttaagagatgatggttttgtctgtgaaaaaatatatttgaa
atgacaaaataataatgatcagaattggtacatttgtcttcagctcagag
acacagaccatagtctcaactggtttggtcatgacccctttgagtcgatg
aaccttcaacagacatcacatatcagattatctgggtatcagatatttta
gatgatgatcataacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112954161_112955233
seq2: B6Ng01-282O02.g_71_1138

seq1  GAATTCTTAAACGACACTAATTCCAAGACCCCTCACTGGTGACTTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACGACACTAATTCCAAGACCCCTCACTGGTGACTTTACAG  50

seq1  AGTGTTTGGAATGCCTTCTCCTTTATTCTAGAACATCCATGAAGAACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGGAATGCCTTCTCCTTTATTCTAGAACATCCATGAAGAACCCT  100

seq1  TTCAAATATTAATACCACAATCCCTTGTGGTATTAAGGCCATTACCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATTAATACCACAATCCCTTGTGGTATTAAGGCCATTACCAATA  150

seq1  AGGCATAATAAAGTTAGAAGAAGAGCTAGTCACTTATAGCTAAAGCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATAAAGTTAGAAGAAGAGCTAGTCACTTATAGCTAAAGCATAG  200

seq1  GACAGAGATGCTCTCATGTTGAAAGAGTCAAGGAAGCATCCAGAATAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATGCTCTCATGTTGAAAGAGTCAAGGAAGCATCCAGAATAGTC  250

seq1  AGATGTCAGCAGGGGCAAGAAACCAAGGCTGTTGTACAGATAGAAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGCAGGGGCAAGAAACCAAGGCTGTTGTACAGATAGAAGCACT  300

seq1  GGCCTTACTAGAGAAGAACATTCCATACAGATGCACTTTCAACAGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACTAGAGAAGAACATTCCATACAGATGCACTTTCAACAGTTTGG  350

seq1  GTGAGAGTATTTCTCCACATGACTGGCCTGCTCTAAGTCAGAGGTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTATTTCTCCACATGACTGGCCTGCTCTAAGTCAGAGGTCTGCA  400

seq1  GGGCACCTCACTTTTCACTCCTATGACACACACTATACTCATCTCAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTCACTTTTCACTCCTATGACACACACTATACTCATCTCAATCC  450

seq1  TACAAGAGAGTGACATCTCAGTTTGTCCTAAAAATTCTGTGGAAACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGAGTGACATCTCAGTTTGTCCTAAAAATTCTGTGGAAACACAT  500

seq1  GACCTCCATGCTGGTGTCAGGACTTTGTCCTCTGTTCTATCTTCTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCATGCTGGTGTCAGGACTTTGTCCTCTGTTCTATCTTCTCTCCT  550

seq1  CTCTTGAATTCCACTACAACTTGGACTGTTCTTTCTGCTTTGGATTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAATTCCACTACAACTTGGACTGTTCTTTCTGCTTTGGATTCAGA  600

seq1  GTTCTCTTGTGTCCTTTTGGAAATCATACTTGTTTTGCTTCTCTTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTGTGTCCTTTTGGAAATCATACTTGTTTTGCTTCTCTTCCTAG  650

seq1  CATTCCTTCCTTGAGAAGGGTCTTATAATATAATAAACTCTGGCCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCCTTGAGAAGGGTCTTATAATATAATAAACTCTGGCCCAAGA  700

seq1  TAGGCATCACATGAGAGCCATGTGAGCCAGTGAGACGAGCTCTTGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCACATGAGAGCCATGTGAGCCAGTGAGACGAGCTCTTGAACAA  750

seq1  CACAAATGTGTTTTTATTCATGTTTCCTAAGTGCAAAATTGATTTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTGTTTTTATTCATGTTTCCTAAGTGCAAAATTGATTTGCCTT  800

seq1  CTCTTTTAGGGCAC-AAGGCCCTTTTAGAAGAATAAATGCTAGAATTCAA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAGGGCACAAAGGCCCTTTTAGAAGAATAAATGCTAGAATTCAA  850

seq1  ATATCCTCTTTAAGAGATGATGGTTTTGTCTGTGAAAAAATATATTTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCTTTAAGAGATGATGGTTTTGTCTGTGAAAAAATATATTTGAA  900

seq1  ATGACAAAATAATAATGATCAGAATTGGTACATTTGTCTTTCAGGCTCAG  949
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  ATGACAAAATAATAATGATCAGAATTGGTACATTTGTC-TTCA-GCTCAG  948

seq1  AGACAACAGACCATAGTTCTCAACTGG-TTGGTCATGACCCCTTTTGAGG  998
      |||| ||||||||||| |||||||||| |||||||||||||| ||||| |
seq2  AGAC-ACAGACCATAG-TCTCAACTGGTTTGGTCATGACCCC-TTTGA-G  994

seq1  TCGAATGAACCTTTCACAGACATCACATATCAGATATCCTGGGTATCAGA  1048
      ||| |||||||||  ||||||||||||||||||||   ||||||||||||
seq2  TCG-ATGAACCTTCAACAGACATCACATATCAGATTATCTGGGTATCAGA  1043

seq1  TA-TTTAGATGATGATTCATAACAGT  1073
      || |||||||||||| ||||||||||
seq2  TATTTTAGATGATGA-TCATAACAGT  1068