BAC Information

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BAC

Clone NameB6Ng01-284F16
Chromosome2 (Build37)
Map Location 35,888,537 - 36,079,935
singlet/doubletdoublet
Overlap geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493
Upstream geneHc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
Downstream genePtgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284F16.bB6Ng01-284F16.g
ACCGA083078GA083079
length1,0771,067
definitionB6Ng01-284F16.b B6Ng01-284F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,888,537 - 35,889,608)(36,078,888 - 36,079,935)
sequence
gaattccagagctcttgccctcagttatcatgctatccactgtgtcacgg
gaacaatggggcaggatgtaggaagacgatgcttcctggggaagacagca
ctagtgtctgccttgagagatggctcagggttcaagaggcagaggaggag
gaaggatggtttcctggcgagatagcagccagatagacttaaacgctaga
aagcatctaggcatccatcggcacaggccggtgatcccagttacctgaga
agctgagacaggaagatcaccaagttcaacaccagcctgagcaagttagt
cgagataatgtctcaaacatggaaggtaaaactgggactggagatgtaac
ttagctggagggcttaactagcatgcaggaagccctgggtttaactccca
gcacgggaggaaaaaaaaaaagtggaaatcagtctgggattggccttcta
cagagtgcagggttcattgtaagattaagataaacgtggggaaatgaggt
aggctaaaaccagattatggagtgtcaggatgctagcaagggctcaggcg
ttccctggcaggcatttgggagccactgaagattttgagcagcagaggca
cacacagcaatttgggagatggactagaccacagttaggaaacagttgta
ataatccaggcaagggaaacacggcagcctaggttgagggcagagagata
gagaggaagcagtcaatgtgagatgtgcaacagaagaaactcaagggggg
cttggtgttgggacatgaacaggacagaaatgagtggaaaggagccaaag
atgcatctcgtgttttgacactaggaggatggagacaagtgtgactcaga
tagggaagacaggaatgggcttggcaggaaaaggccagatatgtttcctt
tgggaatggcaagattagtcttttctagccctcaagcccaggccagtttc
tgttgtttgaagccctgctcagggaaccttcacactaacgggctttcaat
tggttccgtgaacttttacctactgccactgagacttccatttggttgga
agaattataatcttttaactacctaga
gaattcatacttcaaacaactccgcagctctcaggccagagccctacaag
tccactgtctggagcctttcagattgaagtggactggctcaccccacgta
cggaatgtgcctgggctttaatgctttgttaatcgctcagcaccatttag
ccatatatagcttggaaacattcttgcttactccagcttcctaatctcca
aagtagcccttcgacataggggctttcacctgtgaatgggagtgaggagg
ctggagaagccaggattgtttccagtgcaagagacagacattcacggtca
ctttgctgaaaatcagaggatagatatggctacatccaaattcctattca
ttcccctctctcccaggactcgagtatctccaggttcacactgcccccat
gccctagccctacctaaaagataggatgacgcctttctcctaacaacctc
atggaagtgagactcttttgattgttctgccttagctccagcagccactt
ttgagccaactgctatcaccaggaagatgtaatgtcctgatttttcaggc
tgatcagtgttaagactgtgccttctgtaagacagatttgggaacagggt
gtttccacaagaaaccctagtgcagctctcaaaaggagaaggccaggttt
gctggggtgatggcttgggcagtacttggtaaagcccttgtctttgggag
catgaggacctgggctcagattccccaggacccacataaagagcctggtg
ctgcagtgcatgcccatgatcccagcacttggcagtcaggaggatccctg
gtgctttgctggccagccacactagccttaatctgtgaggtccagacttc
agtgagagcctctatctcaggaaaaaagaaaaaaaaaaaaaaattagggc
agaaagcaattgagatgatagcccagtatcaaactcatggcttcacaata
catatgcaccacatgtatacaccacaaacatgcacacacacacggtttgt
gttacttaagtctaaatttaaaagaaggaaggaagagaggtcagacaacc
tggggttttttttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35888537_35889608
seq2: B6Ng01-284F16.b_52_1128

seq1  GAATTCCAGAGCTCTTGCCCTCAGTTATCATGCTATCCACTGTGTCACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTCTTGCCCTCAGTTATCATGCTATCCACTGTGTCACGG  50

seq1  GAACAATGGGGCAGGATGTAGGAAGACGATGCTTCCTGGGGAAGACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGGGCAGGATGTAGGAAGACGATGCTTCCTGGGGAAGACAGCA  100

seq1  CTAGTGTCTGCCTTGAGAGATGGCTCAGGGTTCAAGAGGCAGAGGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCTGCCTTGAGAGATGGCTCAGGGTTCAAGAGGCAGAGGAGGAG  150

seq1  GAAGGATGGTTTCCTGGCGAGATAGCAGCCAGATAGACTTAAACGCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGGTTTCCTGGCGAGATAGCAGCCAGATAGACTTAAACGCTAGA  200

seq1  AAGCATCTAGGCATCCATCGGCACAGGCCGGTGATCCCAGTTACCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTAGGCATCCATCGGCACAGGCCGGTGATCCCAGTTACCTGAGA  250

seq1  AGCTGAGACAGGAAGATCACCAAGTTCAACACCAGCCTGAGCAAGTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGACAGGAAGATCACCAAGTTCAACACCAGCCTGAGCAAGTTAGT  300

seq1  CGAGATAATGTCTCAAACATGGAAGGTAAAACTGGGACTGGAGATGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATAATGTCTCAAACATGGAAGGTAAAACTGGGACTGGAGATGTAAC  350

seq1  TTAGCTGGAGGGCTTAACTAGCATGCAGGAAGCCCTGGGTTTAACTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGAGGGCTTAACTAGCATGCAGGAAGCCCTGGGTTTAACTCCCA  400

seq1  GCACGGGAGGAAAAAAAAAAAGTGGAAATCAGTCTGGGATTGGCCTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGAGGAAAAAAAAAAAGTGGAAATCAGTCTGGGATTGGCCTTCTA  450

seq1  CAGAGTGCAGGGTTCATTGTAAGATTAAGATAAACGTGGGGAAATGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCAGGGTTCATTGTAAGATTAAGATAAACGTGGGGAAATGAGGT  500

seq1  AGGCTAAAACCAGATTATGGAGTGTCAGGATGCTAGCAAGGGCTCAGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAACCAGATTATGGAGTGTCAGGATGCTAGCAAGGGCTCAGGCG  550

seq1  TTCCCTGGCAGGCATTTGGGAGCCACTGAAGATTTTGAGCAGCAGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGCAGGCATTTGGGAGCCACTGAAGATTTTGAGCAGCAGAGGCA  600

seq1  CACACAGCAATTTGGGAGATGGACTAGACCACAGTTAGGAAACAGTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAATTTGGGAGATGGACTAGACCACAGTTAGGAAACAGTTGTA  650

seq1  ATAATCCAGGCAAGGGAAACACGGCAGCCTAGGTTGAGGGCAGAGAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAGGCAAGGGAAACACGGCAGCCTAGGTTGAGGGCAGAGAGATA  700

seq1  GAGAGGAAGCAGTCAATGTGAGATGTGCAACAGAAGAAACTCAA-GGGGG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGAGGAAGCAGTCAATGTGAGATGTGCAACAGAAGAAACTCAAGGGGGG  750

seq1  CTTGGTGTTGGGACATGAACAGGACAGAAATGAGTGG-AAGGAGCCAAAG  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTGGTGTTGGGACATGAACAGGACAGAAATGAGTGGAAAGGAGCCAAAG  800

seq1  ATGCATCTCGTGTTTTGACACTAGGAGGATGGAGACAAGTGTGGACTCAG  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGCATCTCGTGTTTTGACACTAGGAGGATGGAGACAAGTGT-GACTCAG  849

seq1  ATAGGGAAGACAGGAATGGGCTTGGCAGGGAAAGGCCAGATATGTTTCCT  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGGGAAGACAGGAATGGGCTTGGCAGGAAAAGGCCAGATATGTTTCCT  899

seq1  TTGGGAATGCAAAGAATTAGTC-TTTCTAG-CCTC-AGGCCAAGCCAGTT  945
      |||||||||  ||| ||||||| ||||||| |||| || ||| |||||||
seq2  TTGGGAATGGCAAG-ATTAGTCTTTTCTAGCCCTCAAGCCCAGGCCAGTT  948

seq1  TCTGTTGTTTGAAGCCCTGCTCAGGGGACCTTCACACTAAC-GGCTTTCA  994
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TCTGTTGTTTGAAGCCCTGCTCAGGGAACCTTCACACTAACGGGCTTTCA  998

seq1  AATTGTTCCGTGACCTTTTACCTACTGCCACTGAGACCTTCATTT-GTTG  1043
      | | ||||||||| ||||||||||||||||||||||| | ||||| ||||
seq2  ATTGGTTCCGTGAACTTTTACCTACTGCCACTGAGACTTCCATTTGGTTG  1048

seq1  TAAGAAATTATTATC-TTTAACTACCTAGA  1072
       ||| |||||| ||| ||||||||||||||
seq2  GAAG-AATTATAATCTTTTAACTACCTAGA  1077

seq1: chr2_36078888_36079935
seq2: B6Ng01-284F16.g_69_1135 (reverse)

seq1  AGGG-AAAGAGACCCCA-GTTGTCTG-CCTCTCTTCCTTCC-TCTTTTAA  46
      |||| ||| | |||||| |||||||| |||||||||||||| ||||||||
seq2  AGGGAAAAAAAACCCCAGGTTGTCTGACCTCTCTTCCTTCCTTCTTTTAA  50

seq1  --TTTGACTTAAGT-ACACAA---CTGTGTGTGTGCATGTTTGT-GTGTA  89
        || ||||||||| ||||||    ||||||||||||||||||| |||||
seq2  ATTTAGACTTAAGTAACACAAACCGTGTGTGTGTGCATGTTTGTGGTGTA  100

seq1  TACATGT-GTGCATATGTA-TGTGAAGCC-TGAGTTTGATACT-GGCTAT  135
      ||||||| ||||||||||| ||||||||| ||||||||||||| ||||||
seq2  TACATGTGGTGCATATGTATTGTGAAGCCATGAGTTTGATACTGGGCTAT  150

seq1  CATCCTCAATTGCTTTCTGCCCT-ATTTTTTTTTTTTTTTCTTTTTTCTT  184
      ||| ||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CAT-CTCAATTGCTTTCTGCCCTAATTTTTTTTTTTTTTTCTTTTTTCCT  199

seq1  GAGATAGAGGCTCTCACTG-AGTCTGGACCTCACAGATT-AGGCTAGTGT  232
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  GAGATAGAGGCTCTCACTGAAGTCTGGACCTCACAGATTAAGGCTAGTGT  249

seq1  GGCTGGCCAGC-AAGCACCAGGGATCCTCCTGACTGCCAAGTGCTGGGAT  281
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCAGCAAAGCACCAGGGATCCTCCTGACTGCCAAGTGCTGGGAT  299

seq1  CATGGGCATGCACTGCAGCACCAGGCTCTTTATGTGGGTCCTGGGGAATC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATGCACTGCAGCACCAGGCTCTTTATGTGGGTCCTGGGGAATC  349

seq1  TGAGCCCAGGTCCTCATGCTCCC-AAGACAAGGGCTTTACCAAGTACTGC  380
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGCCCAGGTCCTCATGCTCCCAAAGACAAGGGCTTTACCAAGTACTGC  399

seq1  CCAAGCCATCACCCCAGCAAACCTGGCCTTCTCCTTTTGAGAGCTGCACT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCATCACCCCAGCAAACCTGGCCTTCTCCTTTTGAGAGCTGCACT  449

seq1  AGGGTTTCTTGTGGAAACACCCTGTTCCCAAATCTGTCTTACAGAAGGCA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTTGTGGAAACACCCTGTTCCCAAATCTGTCTTACAGAAGGCA  499

seq1  CAGTCTTAACACTGATCAGCCTGAAAAATCAGGACATTACATCTTCCTGG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAACACTGATCAGCCTGAAAAATCAGGACATTACATCTTCCTGG  549

seq1  TGATAGCAGTTGGCTCAAAAGTGGCTGCTGGAGCTAAGGCAGAACAATCA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAGTTGGCTCAAAAGTGGCTGCTGGAGCTAAGGCAGAACAATCA  599

seq1  AAAGAGTCTCACTTCCATGAGGTTGTTAGGAGAAAGGCGTCATCCTATCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTCACTTCCATGAGGTTGTTAGGAGAAAGGCGTCATCCTATCT  649

seq1  TTTAGGTAGGGCTAGGGCATGGGGGCAGTGTGAACCTGGAGATACTCGAG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAGGGCTAGGGCATGGGGGCAGTGTGAACCTGGAGATACTCGAG  699

seq1  TCCTGGGAGAGAGGGGAATGAATAGGAATTTGGATGTAGCCATATCTATC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAGAGAGGGGAATGAATAGGAATTTGGATGTAGCCATATCTATC  749

seq1  CTCTGATTTTCAGCAAAGTGACCGTGAATGTCTGTCTCTTGCACTGGAAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTCAGCAAAGTGACCGTGAATGTCTGTCTCTTGCACTGGAAA  799

seq1  CAATCCTGGCTTCTCCAGCCTCCTCACTCCCATTCACAGGTGAAAGCCCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGGCTTCTCCAGCCTCCTCACTCCCATTCACAGGTGAAAGCCCC  849

seq1  TATGTCGAAGGGCTACTTTGGAGATTAGGAAGCTGGAGTAAGCAAGAATG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCGAAGGGCTACTTTGGAGATTAGGAAGCTGGAGTAAGCAAGAATG  899

seq1  TTTCCAAGCTATATATGGCTAAATGGTGCTGAGCGATTAACAAAGCATTA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGCTATATATGGCTAAATGGTGCTGAGCGATTAACAAAGCATTA  949

seq1  AAGCCCAGGCACATTCCGTACGTGGGGTGAGCCAGTCCACTTCAATCTGA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGCACATTCCGTACGTGGGGTGAGCCAGTCCACTTCAATCTGA  999

seq1  AAGGCTCCAGACAGTGGACTTGTAGGGCTCTGGCCTGAGAGCTGCGGAGT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCAGACAGTGGACTTGTAGGGCTCTGGCCTGAGAGCTGCGGAGT  1049

seq1  TGTTTGAAGTATGAATTC  1048
      ||||||||||||||||||
seq2  TGTTTGAAGTATGAATTC  1067