BAC Information

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BAC

Clone NameB6Ng01-286J24
Chromosome2 (Build37)
Map Location 139,751,438 - 139,796,701
singlet/doubletdoublet
Overlap geneTasp1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneLOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286J24.bB6Ng01-286J24.g
ACCGA084773GA084774
length1,117788
definitionB6Ng01-286J24.b B6Ng01-286J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,751,438 - 139,752,565)(139,795,713 - 139,796,701)
sequence
gaattcttttgggacgtatgtgttgttagtttggaggaggggcagacaga
tagagaaatgagtgtgcatgggcttgaggtacatcaggtcatcagtacag
gctgggcagcaagtatctttacctactcgggcatctcaccatccccaaac
agttatgtcttgacactaccatcaaaatacccgcatttactgctgaaaga
acagagtagcaactcaactatagatgaaattgatacaatgtttcaatata
cacacaaagaccagtgtatctttgttgcaaatattttttaatttcttcaa
atattttaacatataattgaaagtcttatgaaaacaatccatgaccagca
attcatagaaggaaaagtaagtaaaagtaaacaacccagaagttgacatg
agaggatttttgaagcaaaattaagaatttatataaattagtgactacta
ttcatgaaaagatcaaaaattcaaaataaaaaaaataaacctataaatca
aatcagatggctgagaacacaaagcaaggtcaacagaagtaagaagaggg
gagagcggggatctgaggttctgatgcaatgaggaacaccgatctaactg
atgcaacagaaatgagtgagacaatagcgcctgtctctgtaggatgagct
cccacaccagaacagaagtctcagaagcacagaaatctatgcctaacagc
taaagataccatgagagttctccaaaattgactagtatgctcagcaaggc
ttgacgataaatacaaacctaactattactgagaaatggtacacagtcag
aaagaaaatgttaaaatgtaaaacaaaaacaaaagccccacattacatat
agaagaacaactccaaatccctaatggaaaacaatgagcatgaaaagata
gcagaaaagatttcagaggattagaaagtagggaaccaagatgagagaat
gcgctgtaacagtaaagggctgaaagactttcaggggcatgaagttagac
aatgcttcagcagcggactcgacaataaaaacacaaggagactctttaag
taaaacaacacagagaggcctcactttgatttagtttgtaacagagtatt
cctctggtgtgtgtgtg

gaattccatttattacatcattgcttatcaaccttcctaaagttgcaacc
ctgtagtacagttcctcctgttgtaatgacctccaaccagaacattattt
tcattgctacttcataattgtagttttgctactgttatgaattgtaatgt
aattatgtttatcaatggtcttaggttacctctgttgagaactgctgagt
tagatggagtattctggagatatctgttatgtctatttgatagttgttgt
ttcattctgaaagcttttttgctgctattaattttattcctgggatagtg
aagcctcctagtgttgttgctctattattgtatgaggacctatctgactt
tgatgcccattgtttggttttgaaatctctggtcctaatatttaatatta
acctattcacagctgttatatcttgttggtgaaatgttcttttgttaaaa
tatagtagccttaaaaaaggatttatttactttatgtgtgtgggtatctg
catgtatatctgcatgtatatcttatgtgtgtgtgtatctgcatgtatat
ctttgtaccatttgtaagcttagtgcttgaggaggccaagtgactgttgg
atcccctggaactggagttaaaagctggttgtaagcctgtatgtacatcc
cgggaaactaaacctatgtacccaagtggctcttaacctctgagctacct
gtctagcccatataatggcctctccagtccctatagtggactgattgatg
tttgctagctagtgtgctctcttcttccctcccctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139751438_139752565
seq2: B6Ng01-286J24.b_46_1162

seq1  GAATTCTTTTGGGACGTATGTGTTGTTAGTTTGGAGGAGGGGCAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGACGTATGTGTTGTTAGTTTGGAGGAGGGGCAGACAGA  50

seq1  TAGAGAAATGAGTGTGCATGGGCTTGAGGTACATCAGGTCATCAGTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATGAGTGTGCATGGGCTTGAGGTACATCAGGTCATCAGTACAG  100

seq1  GCTGGGCAGCAAGTATCTTTACCTACTCGGGCATCTCACCATCCCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGCAAGTATCTTTACCTACTCGGGCATCTCACCATCCCCAAAC  150

seq1  AGTTATGTCTTGACACTACCATCAAAATACCCGCATTTACTGCTGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTCTTGACACTACCATCAAAATACCCGCATTTACTGCTGAAAGA  200

seq1  ACAGAGTAGCAACTCAACTATAGATGAAATTGATACAATGTTTCAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAGCAACTCAACTATAGATGAAATTGATACAATGTTTCAATATA  250

seq1  CACACAAAGACCAGTGTATCTTTGTTGCAAATATTTTTTAATTTCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGACCAGTGTATCTTTGTTGCAAATATTTTTTAATTTCTTCAA  300

seq1  ATATTTTAACATATAATTGAAAGTCTTATGAAAACAATCCATGACCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAACATATAATTGAAAGTCTTATGAAAACAATCCATGACCAGCA  350

seq1  ATTCATAGAAGGAAAAGTAAGTAAAAGTAAACAACCCAGAAGTTGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGAAGGAAAAGTAAGTAAAAGTAAACAACCCAGAAGTTGACATG  400

seq1  AGAGGATTTTTGAAGCAAAATTAAGAATTTATATAAATTAGTGACTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTTTTGAAGCAAAATTAAGAATTTATATAAATTAGTGACTACTA  450

seq1  TTCATGAAAAGATCAAAAATTCAAAATAAAAAAAATAAACCTATAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAAAGATCAAAAATTCAAAATAAAAAAAATAAACCTATAAATCA  500

seq1  AATCAGATGGCTGAGAACACAAAGCAAGGTCAACAGAAGTAAGAAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATGGCTGAGAACACAAAGCAAGGTCAACAGAAGTAAGAAGAGGG  550

seq1  GAGAGCGGGGATCTGAGGTTCTGATGCAATGAGGAACACCGATCTAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCGGGGATCTGAGGTTCTGATGCAATGAGGAACACCGATCTAACTG  600

seq1  ATGCAACAGAAATGAGTGAGACAATAGCGCCTGTCTCTGTAGGATGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGAAATGAGTGAGACAATAGCGCCTGTCTCTGTAGGATGAGCT  650

seq1  CCCACACCAGAACAGAAGTCTCAGAAGCACAGAAATCTATGCCTAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCAGAACAGAAGTCTCAGAAGCACAGAAATCTATGCCTAACAGC  700

seq1  TAAAGATACCATGAGAGTTCTCCAAAATTGACTAGTATGCTCAGCAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATACCATGAGAGTTCTCCAAAATTGACTAGTATGCTCAGCAAGGC  750

seq1  TTGACGATAAATACAAACCTAACTATTACTGAGAAATGGTACACAGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGATAAATACAAACCTAACTATTACTGAGAAATGGTACACAGTCAG  800

seq1  AAAGAAAATGTTAAAATGTAAAACAAAAACAAAAGCCCCACATTACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGTTAAAATGTAAAACAAAAACAAAAGCCCCACATTACATAT  850

seq1  AGAAGAACAACTCCAAATCCCTAATGG-AAACAATGAGCATGAAAAGATA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAGAACAACTCCAAATCCCTAATGGAAAACAATGAGCATGAAAAGATA  900

seq1  GCAGAAAAGATTTCAGAGGATTAGAAAAGTAGGGAACCAAAAGATGAAGA  949
      |||||||||||||||||||||||| |||||||||||||  |||||| |||
seq2  GCAGAAAAGATTTCAGAGGATTAG-AAAGTAGGGAACC--AAGATG-AGA  946

seq1  GAATGCGCTGTAACAGTAAAGGGCTGAAAGACCTTTCAGGGGCATGAAGT  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GAATGCGCTGTAACAGTAAAGGGCTGAAAGA-CTTTCAGGGGCATGAAG-  994

seq1  TTAGACAATGCTTCAGCAGCGGACTCGGACAATAAAAACACAAAGGAGAC  1049
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TTAGACAATGCTTCAGCAGCGGACTC-GACAATAAAAACAC-AAGGAGAC  1042

seq1  TCTTTAAAGTAAAACAACACAGAAGAAGCCTCAACTTTGATTTTAGTTTT  1099
      ||||| |||||||||||||||| ||| ||||| ||||||| ||||| |||
seq2  TCTTT-AAGTAAAACAACACAG-AGAGGCCTC-ACTTTGA-TTTAG-TTT  1087

seq1  GGAACAGAGTAT--CTCTGTGTGTGTGTGTG  1128
      | ||||||||||  ||||| |||||||||||
seq2  GTAACAGAGTATTCCTCTG-GTGTGTGTGTG  1117


seq1: chr2_139795713_139796701
seq2: B6Ng01-286J24.g_278_853 (reverse)

seq1  AGGAGGAGGACAGCCTTGAGCATGAAGGGATGAACAAACTTCATGAAAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCAGGTGATTGGGAGTTATCAAAGAAATCTTGTTTAACAGAGAGAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCAAATAACACTGACAGGAGAGAAAGTAAACGATAAACAACAATCTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAACCAGAAAACAATGGACAAAATTATATGCGTTAGTAAGAATCTCGCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTGATACCCTTACATGGACTGGAATCACAAGGACAGAGAGATGCAAGATA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTGACTGAATTAAAACACAGATTCAGCTATCTGTTGTCAAAAACACCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTCACTGGTAATGTTACCCACAGGCTTAGAGGTAAAAGATGGAAAAC  350
                                                        
seq2  --------------------------------------------------  0

seq1  GATATACTAAGAGAATTGGGCAAGATTGTACAACTATTCTGGTATTGGGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGAGAGCACACTAGCTAGCAA  450
                   |||  ||||||||||||||||||||||||||||||||
seq2  -------------AGGAGGGGAGGGAAGAAGAGAGCACACTAGCTAGCAA  37

seq1  ACATCAATCAGTCCACTATAGGGACTGGAGAGGCCATTATATGGGCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATCAGTCCACTATAGGGACTGGAGAGGCCATTATATGGGCTAGA  87

seq1  CAGGTAGCTCAGAGGTTAAGAGCCACTTGGGTACATAGGTTTAGTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTCAGAGGTTAAGAGCCACTTGGGTACATAGGTTTAGTTTCCC  137

seq1  GGGATGTACATACAGGCTTACAACCAGCTTTTAACTCCAGTTCCAGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTACATACAGGCTTACAACCAGCTTTTAACTCCAGTTCCAGGGGA  187

seq1  TCCAACAGTCACTTGGCCTCCTCAAGCACTAAGCTTACAAATGGTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGTCACTTGGCCTCCTCAAGCACTAAGCTTACAAATGGTACAAA  237

seq1  GATATACATGCAGATACACACACACATAAGATATACATGCAGATATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATGCAGATACACACACACATAAGATATACATGCAGATATACAT  287

seq1  GCAGATACCCACACACATAAAGTAAATAAATCCTTTTTTAAGGCTACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACCCACACACATAAAGTAAATAAATCCTTTTTTAAGGCTACTAT  337

seq1  ATTTTAACAAAAGAACATTTCACCAACAAGATATAACAGCTGTGAATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAAAAGAACATTTCACCAACAAGATATAACAGCTGTGAATAGG  387

seq1  TTAATATTAAATATTAGGACCAGAGATTTCAAAACCAAACAATGGGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAATATTAGGACCAGAGATTTCAAAACCAAACAATGGGCATC  437

seq1  AAAGTCAGATAGGTCCTCATACAATAATAGAGCAACAACACTAGGAGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGATAGGTCCTCATACAATAATAGAGCAACAACACTAGGAGGCT  487

seq1  TCACTATCCCAGGAATAAAATTAATAGCAGCAAAAAAGCTTTCAGAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCCCAGGAATAAAATTAATAGCAGCAAAAAAGCTTTCAGAATGA  537

seq1  AACAACAACTATCAAATAGACATAACAGATATCTCCAGA  989
      |||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACTATCAAATAGACATAACAGATATCTCCAGA  576


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