BAC Information

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BAC

Clone NameB6Ng01-287L13
Chromosome2 (Build37)
Map Location 45,212,371 - 45,357,449
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287L13.bB6Ng01-287L13.g
ACCGA085567GA085568
length1,167303
definitionB6Ng01-287L13.b B6Ng01-287L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,212,371 - 45,213,555)(45,357,147 - 45,357,449)
sequence
gaattcttggcaaattaatgcactacctcttgggctaattaaattagaaa
ggatcaaaaatacagagcggcttttgtggtggacacaatgtcgtgcttca
tgcatctcgctcagagaggaatttctgccatttagccccctttgcctcta
gcagtgttctggactctctaacacagtcaagttcctaatttgcctcaatg
agagagaattattaactgataataagaaaaggagcattcacagctccagg
ctgggctctgtggaaaggggtgatctacccagcacctgaagcacatgcaa
tttttattaattcctgcccaaaacaatgcattcaggagtaaaattgctgt
gcagatgacaaaaacaattacgcctttgattcgctcattctaacaatgtg
aactactttagctcacatatatccagattaaacaaccgaggcagccggcg
ctcaccttcccttaaatcccgtttggattgcagtaagtgtgttttatgtt
gagaagtggccaccagcgcttaaactgattgttctactggagtctctgag
tgcacatgtgactttgacaataattaatattgttctctctatactgtggt
cctttgtttggaagatgacactgatggtggtgttgctatcttcgtgggca
ttaggcccagaatgagagacaggagctcctacaatcaattctggcgtgac
tatttgttctgcagcctttctgtgactcactgttctttagccagtctttt
actggtgtgcctgcctctttgatgttggggtcttgtggtagctttgacca
aaacaagatatagtcatttctacctccggcagagtcaagagtggctcatg
ctattcacgctttttgtattaccacaacagggcttcctcaatgacttctg
cccaagtttcttctgtggctctttaggggatgactctaatagacatgagt
tggttgtatttatttcttgccttcttcttctattatagtgggtgctagag
aaactgctctaaactagaagtatctatttttatcttaaaagaatgagtgt
aacttagcttgagctttctttactctttccaatccacactctcataaata
gtcaattcatttatcgagtctctaggatgtgtccacaccaaaccatgcag
ttctaatcgattttcta

aaataaaaagagtagggtttattggcagataattattcagaaaaaagtga
gggatataaaattgttcaacaaagaaaaagttatcaggcataatactaac
aagtttacaaagatgaagaacataggtaagtgatatcagacttgtctggt
atacttacagtcatgggtctaatctacaacaagcaaaacagtatatagag
agacaggtagaaatagagatagatagaaagatagagatagataatagatg
gatgaatagatagatagatagtagatagatagatagatagatagatagat
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45212371_45213555
seq2: B6Ng01-287L13.b_51_1217

seq1  GAATTCTTGGCAAATTAATGCACTACCTCTTGGGCTAATTAAATTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCAAATTAATGCACTACCTCTTGGGCTAATTAAATTAGAAA  50

seq1  GGATCAAAAATACAGAGCGGCTTTTGTGGTGGACACAATGTCGTGCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAAATACAGAGCGGCTTTTGTGGTGGACACAATGTCGTGCTTCA  100

seq1  TGCATCTCGCTCAGAGAGGAATTTCTGCCATTTAGCCCCCTTTGCCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCGCTCAGAGAGGAATTTCTGCCATTTAGCCCCCTTTGCCTCTA  150

seq1  GCAGTGTTCTGGACTCTCTAACACAGTCAAGTTCCTAATTTGCCTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTCTGGACTCTCTAACACAGTCAAGTTCCTAATTTGCCTCAATG  200

seq1  AGAGAGAATTATTAACTGATAATAAGAAAAGGAGCATTCACAGCTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATTATTAACTGATAATAAGAAAAGGAGCATTCACAGCTCCAGG  250

seq1  CTGGGCTCTGTGGAAAGGGGTGATCTACCCAGCACCTGAAGCACATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTGTGGAAAGGGGTGATCTACCCAGCACCTGAAGCACATGCAA  300

seq1  TTTTTATTAATTCCTGCCCAAAACAATGCATTCAGGAGTAAAATTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAATTCCTGCCCAAAACAATGCATTCAGGAGTAAAATTGCTGT  350

seq1  GCAGATGACAAAAACAATTACGCCTTTGATTCGCTCATTCTAACAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGACAAAAACAATTACGCCTTTGATTCGCTCATTCTAACAATGTG  400

seq1  AACTACTTTAGCTCACATATATCCAGATTAAACAACCGAGGCAGCCGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTAGCTCACATATATCCAGATTAAACAACCGAGGCAGCCGGCG  450

seq1  CTCACCTTCCCTTAAATCCCGTTTGGATTGCAGTAAGTGTGTTTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCCCTTAAATCCCGTTTGGATTGCAGTAAGTGTGTTTTATGTT  500

seq1  GAGAAGTGGCCACCAGCGCTTAAACTGATTGTTCTACTGGAGTCTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGCCACCAGCGCTTAAACTGATTGTTCTACTGGAGTCTCTGAG  550

seq1  TGCACATGTGACTTTGACAATAATTAATATTGTTCTCTCTATACTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGTGACTTTGACAATAATTAATATTGTTCTCTCTATACTGTGGT  600

seq1  CCTTTGTTTGGAAGATGACACTGATGGTGGTGTTGCTATCTTCGTGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTGGAAGATGACACTGATGGTGGTGTTGCTATCTTCGTGGGCA  650

seq1  TTAGGCCCAGAATGAGAGACAGGAGCTCCTACAATCAATTCTGGCGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCCAGAATGAGAGACAGGAGCTCCTACAATCAATTCTGGCGTGAC  700

seq1  TATTTGTTCTGCAGCCTTTCTGTGACTCACTGTTCTTTAGCCAGTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTCTGCAGCCTTTCTGTGACTCACTGTTCTTTAGCCAGTCTTTT  750

seq1  ACTGGTGTGCCTGCCTCTTTGATGTTGGGGTCTTGTGGTAGCTTTGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTGCCTGCCTCTTTGATGTTGGGGTCTTGTGGTAGCTTTGACCA  800

seq1  AAACAAGATATAGTCATTTCTACCTCCGGCAGAGTCAAGAGTGGCTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATATAGTCATTTCTACCTCCGGCAGAGTCAAGAGTGGCTCATG  850

seq1  CTATTCACGCTTTTTGTATTACCACAACAGGGCTTCCTCAATGACTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCACGCTTTTTGTATTACCACAACAGGGCTTCCTCAATGACTTCTG  900

seq1  CCCAAGTTTCTTCTGTGGCTCTTTAGGGGATGACTCTAATAGACAATGAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCAAGTTTCTTCTGTGGCTCTTTAGGGGATGACTCTAATAGAC-ATGAG  949

seq1  TTGGTTGTATTTATTTCTTGCCCTTCTTCTTCTATTATTAGTGGGTGCTA  1000
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TTGGTTGTATTTATTTCTTG-CCTTCTTCTTCTATTA-TAGTGGGTGCTA  997

seq1  GGAGAAACTGCTCTAAACTAGAAGTATCTATTTTATTCCTTAAAAGATGA  1050
       ||||||||||||||||||||||||||||||||| |  |||||||||   
seq2  -GAGAAACTGCTCTAAACTAGAAGTATCTATTTT-TATCTTAAAAGAATG  1045

seq1  AGTGGTAACTTTAGCCTTGAGCTTTCTTTACTCTTTCCAATCCACACTTC  1100
      ||| ||||| |||| |||||||||||||||||||||||||||||||||  
seq2  AGT-GTAAC-TTAG-CTTGAGCTTTCTTTACTCTTTCCAATCCACACT--  1090

seq1  CTCATTAAATAGTCATATCATTTATTCAGAGTCTTCTAGGATGTGTCCAC  1150
      |||| ||||||||||  ||||||||   ||||| ||||||||||||||||
seq2  CTCA-TAAATAGTCAATTCATTTAT--CGAGTC-TCTAGGATGTGTCCAC  1136

seq1  ACCACAACCATGGCAGTTTCTATTCAAATTTTCTA  1185
      |||| |||||| |||| ||||| ||  ||||||||
seq2  ACCA-AACCAT-GCAG-TTCTAATC-GATTTTCTA  1167


seq1: chr2_45357147_45357449
seq2: B6Ng01-287L13.g_72_374 (reverse)

seq1  TCTATCTATCTATCTATCTATCTATCTATCTACTATCTATCTATCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTACTATCTATCTATCTATTC  50

seq1  ATCCATCTATTATCTATCTCTATCTTTCTATCTATCTCTATTTCTACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATTATCTATCTCTATCTTTCTATCTATCTCTATTTCTACCTG  100

seq1  TCTCTCTATATACTGTTTTGCTTGTTGTAGATTAGACCCATGACTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATATACTGTTTTGCTTGTTGTAGATTAGACCCATGACTGTAAG  150

seq1  TATACCAGACAAGTCTGATATCACTTACCTATGTTCTTCATCTTTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGACAAGTCTGATATCACTTACCTATGTTCTTCATCTTTGTAAA  200

seq1  CTTGTTAGTATTATGCCTGATAACTTTTTCTTTGTTGAACAATTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGTATTATGCCTGATAACTTTTTCTTTGTTGAACAATTTTATAT  250

seq1  CCCTCACTTTTTTCTGAATAATTATCTGCCAATAAACCCTACTCTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTTTTTTCTGAATAATTATCTGCCAATAAACCCTACTCTTTTTA  300

seq1  TTT  303
      |||
seq2  TTT  303


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