BAC Information

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BAC

Clone NameB6Ng01-289O14
Chromosome12 (Build37)2 (Build37)
Map Location 44,109,248 - 44,110,32113,224,495 - 13,224,864
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG638533
Downstream geneLOC100039059, ENSMUSG00000066507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289O14.bB6Ng01-289O14.g
ACCGA087183GA087184
length1,114623
definitionB6Ng01-289O14.b B6Ng01-289O14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,109,248 - 44,110,321)(13,224,495 - 13,224,864)
sequence
gaattcacctctgtatttgtcagacagtgtcagagtctctcaagagacag
ttatatcaggctcctgtcagcaagcacttgttggcaccacaacagtgtct
gggtttggtgaccatatatgagatgggtcccgaggtgtgtctatctttgg
atagtctttcatttcgtctctgctccacaccttgtctctgtatctcctcc
ttagttcccacttctaagaaggattgaagtatccatactttgttcttcct
tcttcttgagcttcatgtggtctgtgaattgtatcttggatatttcaagc
ttctgggttaatattcacttatcagtgaatgtataccatctgtgttcttt
tgtgattgggttaccttactcaggatggtattttctagtttcatccattt
acctaagaatttcatgaagtcattatttttaatagctgtgtagtattcca
ttgtgaaaatgactatattttctgtatcagttccaatgctgaagaacatc
tgggttctttccagcttctggctattagaaataagtcattttgtaaataa
agagaacagatagagaaaatgttttacttgtacactcatagttatataat
ttaatctgatagaggagaaaacttttaaacatagaaaattaaaccctgga
taagctgctatgaaacagttaacacatgttggaaatgttcacaaatcatt
tgcaatatatcaaaactacacatatgcccatactattcatttagaacttg
ttaattaattttgttactctttaattacttaaatagcccgataagtcatc
aataaaagtaaaatatgattaaggagaaactatatgctattttcctttat
aatcattttcaattttttgaaacacttttggttttgtccaagtcatatcc
aagtaatctgagtttcaccaattctgtaggacactgttggttgcaacttt
tttcttaagtggttgactttggtaaatcatatgcatctagagattaaatc
tctttcatgcaatttattagaatataagttattaagtattattaaagtat
agattcatgatatctgagtttagttcagtgtccttggtatacctaaaaat
attttccgttcatc

gaattcccctacactggggcatggaaccttcacaggaccaagggcctttc
ctcccactgatgactgacaaggccgcatatgcgactggagcgatgagtcc
caccatgtgtattctagagactgccccaccaggggatccctcacatatac
agtcaccaaacctagacactcttgtggatgccaacaagtgcttgcttaca
gaagcctgtcatagctgtctcctgagaggctccagcagtacctgacaaat
aaagaggcaaatgctcgcaaccaaccataggactgagcacaaggtgccca
atgaaagaactagagaaaggacccaaggtactgaaggggtttgcagccct
gtaggaggaacaacgatatgaactaaccagtacctccagagctccgaggg
actaaacaacaaaccaaagagcatctacattttttattagatattttctt
catttacatttcaaatgctatcttaaaagtcccctataacctctccctgt
cctgctctgcaacccacccactcccatttcctggccctggcatttccctg
tactggggcatataatctttgaaagaccaatgcctctcctccaattgatg
gccaactaggccatcctctgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44109248_44110321
seq2: B6Ng01-289O14.b_87_1165 (reverse)

seq1  GATGAAAGGAAAATATTTT--AGTATAC--AAGACACTG-ACTAAACTCA  45
      |||||| ||||||||||||   ||||||  | ||||||| ||||||||||
seq2  GATGAACGGAAAATATTTTTAGGTATACCAAGGACACTGAACTAAACTCA  50

seq1  GATTATCATGAATCTATACTTTAATAATTACTTTAATAATTTATATTCTA  95
      || |||||||||||||||||||||||| ||| ||||||| ||||||||||
seq2  GA-TATCATGAATCTATACTTTAATAA-TAC-TTAATAACTTATATTCTA  97

seq1  ATAAATTGCATGAAAGAGA-TTAATCTCTAGATGCATATGATTTACCAAA  144
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAAATTGCATGAAAGAGATTTAATCTCTAGATGCATATGATTTACCAAA  147

seq1  GTCAACCACTTAAG-AAAAAGTTGCAACCAACAGTGTCCTACAGAATTTG  193
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  GTCAACCACTTAAGAAAAAAGTTGCAACCAACAGTGTCCTACAGAATTGG  197

seq1  TGAAACTCAGATTACTTGGATATGACTTGGACAAAACCAAAAGTGTTTCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAGATTACTTGGATATGACTTGGACAAAACCAAAAGTGTTTCA  247

seq1  AAAAATTGAAAATGATTATAAAGGAAAATAGCATATAGTTTCTCCTTAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAAAATGATTATAAAGGAAAATAGCATATAGTTTCTCCTTAAT  297

seq1  CATATTTTACTTTTATTGATGACTTATCGGGCTATTT-AGTAATTAAAGA  342
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATATTTTACTTTTATTGATGACTTATCGGGCTATTTAAGTAATTAAAGA  347

seq1  GTAACAAAATTAATTAACAAGTTCTAAATGAATAGTATGGGCATATGTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAATTAATTAACAAGTTCTAAATGAATAGTATGGGCATATGTGT  397

seq1  AGTTTTGATATATTGCAAATGATTTGTGAACATTTCCAACATGTGTTAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATATATTGCAAATGATTTGTGAACATTTCCAACATGTGTTAAC  447

seq1  TGTTTCATAGCAGCTTATCCAGGGTTTAATTTTCTATGTTTAAAAGTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATAGCAGCTTATCCAGGGTTTAATTTTCTATGTTTAAAAGTTTT  497

seq1  CTCCTCTATCAGATTAAATTATATAACTATGAGTGTACAAGTAAAACATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTATCAGATTAAATTATATAACTATGAGTGTACAAGTAAAACATT  547

seq1  TTCTCTATCTGTTCTCTTTATTTACAAAATGACTTATTTCTAATAGCCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCTGTTCTCTTTATTTACAAAATGACTTATTTCTAATAGCCAG  597

seq1  AAGCTGGAAAGAACCCAGATGTTCTTCAGCATTGGAACTGATACAGAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAAGAACCCAGATGTTCTTCAGCATTGGAACTGATACAGAAAA  647

seq1  TATAGTCATTTTCACAATGGAATACTACACAGCTATTAAAAATAATGACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCATTTTCACAATGGAATACTACACAGCTATTAAAAATAATGACT  697

seq1  TCATGAAATTCTTAGGTAAATGGATGAAACTAGAAAATACCATCCTGAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATTCTTAGGTAAATGGATGAAACTAGAAAATACCATCCTGAGT  747

seq1  AAGGTAACCCAATCACAAAAGAACACAGATGGTATACATTCACTGATAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACCCAATCACAAAAGAACACAGATGGTATACATTCACTGATAAG  797

seq1  TGAATATTAACCCAGAAGCTTGAAATATCCAAGATACAATTCACAGACCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAACCCAGAAGCTTGAAATATCCAAGATACAATTCACAGACCA  847

seq1  CATGAAGCTCAAGAAGAAGGAAGAACAAAGTATGGATACTTCAATCCTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCTCAAGAAGAAGGAAGAACAAAGTATGGATACTTCAATCCTTC  897

seq1  TTAGAAGTGGGAACTAAGGAGGAGATACAGAGACAAGGTGTGGAGCAGAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTGGGAACTAAGGAGGAGATACAGAGACAAGGTGTGGAGCAGAG  947

seq1  ACGAAATGAAAGACTATCCAAAGATAGACACACCTCGGGACCCATCTCAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATGAAAGACTATCCAAAGATAGACACACCTCGGGACCCATCTCAT  997

seq1  ATATGGTCACCAAACCCAGACACTGTTGTGGTGCCAACAAGTGCTTGCTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCACCAAACCCAGACACTGTTGTGGTGCCAACAAGTGCTTGCTG  1047

seq1  ACAGGAGCCTGATATAACTGTCTCTTGAGAGA  1074
      ||||||||||||||||||||||||||||||||
seq2  ACAGGAGCCTGATATAACTGTCTCTTGAGAGA  1079


seq1: chr2_13224495_13224864
seq2: B6Ng01-289O14.g_414_690 (reverse)

seq1  TAGCAGAGGATGGCCTAGTCCATTTCAGAGACATAAAAATGTTGATGATA  50
      |||||||||||||||||||          | ||| ||    |||  ||  
seq2  TAGCAGAGGATGGCCTAGT--------TGGCCATCAA----TTG--GA--  34

seq1  CTGGAATATGCTTTTTTTTTAACTTTCTTTTTTAATGTTATTTTTTATTA  100
         | | | || ||  |     |||||      || | |           
seq2  ---GGAGAGGCATTGGT-----CTTTC------AAAGAT-----------  59

seq1  GATATTTTCTTCATTTACATTTCAAATGCTATTCCCTTTTCTGGTTTCCT  150
        ||| | |  ||  ||||    |||||| |   |     | ||      
seq2  --TATATGCCCCA-GTACA-GGGAAATGCCAGGGC-----CAGG------  94

seq1  CTCCAAA----AGT-CCTCTATACCCTCCCCCCACCCTGCTCCCCAACCC  195
          |||    |||   |   |               |||    ||   |
seq2  ----AAATGGGAGTGGGTGGGT---------------TGCAGAGCAGGAC  125

seq1  ACCCACTCCTGCTTCCTGGCCCTGGCATACCCCTGTACTAGGGCATATAA  245
      |   |     | ||   ||    ||      | | ||  |  |||| | |
seq2  AGGGA---GAGGTTATAGG----GG-----ACTTTTAAGATAGCATTTGA  163

seq1  TCTTCACAAGACCAAGGGCTTCTCCTCCCAATGATGGCCAACTAGGCCAT  295
        |  | | |   |||    | ||     ||  |||      |||   ||
seq2  AATGTAAATG---AAGAAAATATCTAATAAAAAATG------TAG---AT  201

seq1  CCTCTGCTACATATG-CAACTAGAGACAC--AGCTCTGGAGGTACTGGTT  342
       ||||  |   | ||     |||   | |  |||||||||||||||||||
seq2  GCTCT--TTGGTTTGTTGTTTAGTCCCTCGGAGCTCTGGAGGTACTGGTT  249

seq1  AGTTCATATTGTTGTTCCTCCTATAGGG  370
      ||||||||| ||||||||||||| ||||
seq2  AGTTCATATCGTTGTTCCTCCTACAGGG  277


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