BAC Information

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BAC

Clone NameB6Ng01-291A23
Chromosome2 (Build37)
Map Location 142,494,738 - 142,648,672
singlet/doubletdoublet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291A23.bB6Ng01-291A23.g
ACCGA088047GA088048
length1,2001,161
definitionB6Ng01-291A23.b B6Ng01-291A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,647,482 - 142,648,672)(142,494,738 - 142,495,913)
sequence
gaattcaagtctgagcttctgatgcctgcaaagccctgagcttttcagcg
actgcagggtttcttagccagcttctatggtcagggagatagtacacctc
accggtctaggctctgattatcctcataaatcaccacgagaaggaatggg
tcacctaattgttggtgagttgggcccatcttaggaactaggtatgaagg
tgagggtaagctgtttactgtagctaatatgtactgggatatccagacca
gttgaagtttagtgacactgtccacattttctaccatagacacagtacct
ggctatcaactatagtgtagaaaaagtacatccaaggcaaacaggaggcg
tgtggtcattggcacattcttctgattcttaagagaaaacgtttgtgagt
acttcctttatgaagttggaatttcatgttcccctagggagttccaagca
aaggttccctgagcatcagtgccatggtgcgaacactggacagttaatgg
gagagctctctctgttctttgttagggctgaggtagggtacacggtgaat
ccctagtgtagaaacatggcttctcttagcagattgacaggaccttagat
ggaagcttctgtttgcctgcctgcctttttatatgccgtttcgctgttac
tttctcttatttgagacagagattcatcacaggctgacgtcacccagagc
ttttgatcccctgtttgcctcacgagtgctaggtttacaggcgtgtggca
atttatgtggtgctagcctaaccctgggcctcacgcctaccaggcaagca
ttttaccttctcagttatattcccagccctcctatgtacattcaaacaga
atatacagttgcctcacttgctttttagtctttaatctgtacctatttgg
caacagttactatgtgtttgtgtggcagcagcagcagcagttttaagcag
ttgctttctctgagcaccctggttagttttgcttctgcactgtgtaaaga
tggcagcagttttccttttctcaggacagagaagcttctgacgttttctt
ttgctaaagccaaggttttaagcagcatgttgcctgtaagaaaaaataaa
ttaagcaaggtggatttctactgaaaaaagaaggtggatcttatggtgcc
atgccgaatcttggatgccaggggtctgatgctttataaaaatagcggag


gaattccatggtcctggaacagcaatcccgtgacttaccagaagaagcca
tgttaaagtcaagtgcctgggatagagttttctggtgttttcagtatttg
aaagtaggagattaagattaatgttatagacagagaggaaaacaatacac
acagactaacaacagaaataatgcctgacaagtatccagcaaacaggact
aatcttgagatgcagcagacacttaaggaataaaatgatgggaagccaag
ctgcacaaaagaaacccaaatttactagagcatacagagcagatagacag
tcaactctatccggaagctcttaagtggaaacagttgctttactttgatg
ggataagattaatatagaattagaataaagcactataagaatttcaaatg
taatgtgattctttcaaattctagcttttaatagtgttcatttagaaaca
ggagatgaagatggatatagtggtacatggccatcatcagagcactgggg
aggtggacacaggatgctccaggtcaaccgaggctacacagtgagacctc
atcatacaagttgctgtcattcacattgctcctccacaatgctccccctg
ttccatccccagctggtaacagcactgagtgctcagtcagagggagagtg
acagaaggtgaaagcaccacaccaggcctacagtaggtgtacaaggccta
cagtaggtgagcatctacataatgtctagttgtggcagctgaaaaccaca
ctggtgccaccaaggcctcccctgccacatgccatgttttctagtctcag
accactgctcctgtgatctgttctctttgaaatgcactcacacatgtgtc
tcagcgtctccttcataactaatgtattttgtcctcaggataaagtaatt
ataagccacaaaattgaactcaacacagaaagcatttctgttcttggttt
cccatctcagtcctgagctgtgtttaggaaagggcccctgtgacacagtc
aggaatataatggactgaatactgatcattgctaggattaaaccaaagta
aagaaatgcctgcaatgctgattctaaacaccgcataccttggaagaagt
tcaatatagctcctgcaacctgcacttatccatcgtcctccttgaacata
tcccaactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142647482_142648672
seq2: B6Ng01-291A23.b_46_1245 (reverse)

seq1  CTCCGCCATTTTTAT-AAGCATCAGAACACCCTGGCAATCAAGA-TCTGC  48
      |||||| |||||||| ||||||||||   ||||||||  ||||| || ||
seq2  CTCCGCTATTTTTATAAAGCATCAGA--CCCCTGGCATCCAAGATTCGGC  48

seq1  AT-GCACCAT-AGATCCACCTTTCCTTTTTCAGTAGAAATCCA-CTTGC-  94
      || ||||||| ||||||||| ||| |||||||||||||||||| ||||| 
seq2  ATGGCACCATAAGATCCACC-TTCTTTTTTCAGTAGAAATCCACCTTGCT  97

seq1  TAATT--ATTTTTCTTACAGGC-ACATGCTGCTTAAAACCTTGGCTTTAG  141
      |||||   |||||||||||||| |||||||||||||||||||||||||||
seq2  TAATTTATTTTTTCTTACAGGCAACATGCTGCTTAAAACCTTGGCTTTAG  147

seq1  CAAA--GAGACGTCAG-AGCTTCTCTGT-CTGAGAAAAGGAAAACTGCTG  187
      ||||   | ||||||| ||||||||||| |||||||||||||||||||||
seq2  CAAAAGAAAACGTCAGAAGCTTCTCTGTCCTGAGAAAAGGAAAACTGCTG  197

seq1  CCATCTTTACACAGTGCAGAAGCAAAACTAACCAGGGTGCTCAGAGAAAG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTACACAGTGCAGAAGCAAAACTAACCAGGGTGCTCAGAGAAAG  247

seq1  CAACTGCTTAAAACCTGCTGCTGCTGCTGCCACACAAACACATAGTAACT  287
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTTAAAA-CTGCTGCTGCTGCTGCCACACAAACACATAGTAACT  296

seq1  GTTGCCAAATAGGTACAGATTAAAGACTAAAAAGCAAGTGAGGCAACTGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAAATAGGTACAGATTAAAGACTAAAAAGCAAGTGAGGCAACTGT  346

seq1  ATATTCTGTTTGAATGTACATAGGAGGGCTGGGAATATAACTGAGAAGGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGTTTGAATGTACATAGGAGGGCTGGGAATATAACTGAGAAGGT  396

seq1  AAAATGCTTGCCTGGTAGGCGTGAGGCCCAGGGTTAGGCTAGCACCACAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTGCCTGGTAGGCGTGAGGCCCAGGGTTAGGCTAGCACCACAT  446

seq1  AAATTGCCACACGCCTGTAAACCTAGCACTCGTGAGGCAAACAGGGGATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCACACGCCTGTAAACCTAGCACTCGTGAGGCAAACAGGGGATC  496

seq1  AAAAGCTCTGGGTGACGTCAGCCTGTGATGAATCTCTGTCTCAAATAAGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTGGGTGACGTCAGCCTGTGATGAATCTCTGTCTCAAATAAGA  546

seq1  GAAAGTAACAGCGAAACGGCATATAAAAAGGCAGGCAGGCAAACAGAAGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAACAGCGAAACGGCATATAAAAAGGCAGGCAGGCAAACAGAAGC  596

seq1  TTCCATCTAAGGTCCTGTCAATCTGCTAAGAGAAGCCATGTTTCTACACT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTAAGGTCCTGTCAATCTGCTAAGAGAAGCCATGTTTCTACACT  646

seq1  AGGGATTCACCGTGTACCCTACCTCAGCCCTAACAAAGAACAGAGAGAGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCACCGTGTACCCTACCTCAGCCCTAACAAAGAACAGAGAGAGC  696

seq1  TCTCCCATTAACTGTCCAGTGTTCGCACCATGGCACTGATGCTCAGGGAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATTAACTGTCCAGTGTTCGCACCATGGCACTGATGCTCAGGGAA  746

seq1  CCTTTGCTTGGAACTCCCTAGGGGAACATGAAATTCCAACTTCATAAAGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTGGAACTCCCTAGGGGAACATGAAATTCCAACTTCATAAAGG  796

seq1  AAGTACTCACAAACGTTTTCTCTTAAGAATCAGAAGAATGTGCCAATGAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCACAAACGTTTTCTCTTAAGAATCAGAAGAATGTGCCAATGAC  846

seq1  CACACGCCTCCTGTTTGCCTTGGATGTACTTTTTCTACACTATAGTTGAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCCTCCTGTTTGCCTTGGATGTACTTTTTCTACACTATAGTTGAT  896

seq1  AGCCAGGTACTGTGTCTATGGTAGAAAATGTGGACAGTGTCACTAAACTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTACTGTGTCTATGGTAGAAAATGTGGACAGTGTCACTAAACTT  946

seq1  CAACTGGTCTGGATATCCCAGTACATATTAGCTACAGTAAACAGCTTACC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTCTGGATATCCCAGTACATATTAGCTACAGTAAACAGCTTACC  996

seq1  CTCACCTTCATACCTAGTTCCTAAGATGGGCCCAACTCACCAACAATTAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCATACCTAGTTCCTAAGATGGGCCCAACTCACCAACAATTAG  1046

seq1  GTGACCCATTCCTTCTCGTGGTGATTTATGAGGATAATCAGAGCCTAGAC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCATTCCTTCTCGTGGTGATTTATGAGGATAATCAGAGCCTAGAC  1096

seq1  CGGTGAGGTGTACTATCTCCCTGACCATAGAAGCTGGCTAAGAAACCCTG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGGTGTACTATCTCCCTGACCATAGAAGCTGGCTAAGAAACCCTG  1146

seq1  CAGTCGCTGAAAAGCTCAGGGCTTTGCAGGCATCAGAAGCTCAGACTTGA  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGCTGAAAAGCTCAGGGCTTTGCAGGCATCAGAAGCTCAGACTTGA  1196

seq1  ATTC  1191
      ||||
seq2  ATTC  1200


seq1: chr2_142494738_142495913
seq2: B6Ng01-291A23.g_67_1227

seq1  GAATTCCATGGTCCTGGAACAGCAATCCCGTGACTTACCAGAAGAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTCCTGGAACAGCAATCCCGTGACTTACCAGAAGAAGCCA  50

seq1  TGTTAAAGTCAAGTGCCTGGGATAGAGTTTTCTGGTGTTTTCAGTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGTCAAGTGCCTGGGATAGAGTTTTCTGGTGTTTTCAGTATTTG  100

seq1  AAAGTAGGAGATTAAGATTAATGTTATAGACAGAGAGGAAAACAATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAGATTAAGATTAATGTTATAGACAGAGAGGAAAACAATACAC  150

seq1  ACAGACTAACAACAGAAATAATGCCTGACAAGTATCCAGCAAACAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTAACAACAGAAATAATGCCTGACAAGTATCCAGCAAACAGGACT  200

seq1  AATCTTGAGATGCAGCAGACACTTAAGGAATAAAATGATGGGAAGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAGATGCAGCAGACACTTAAGGAATAAAATGATGGGAAGCCAAG  250

seq1  CTGCACAAAAGAAACCCAAATTTACTAGAGCATACAGAGCAGATAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAAAGAAACCCAAATTTACTAGAGCATACAGAGCAGATAGACAG  300

seq1  TCAACTCTATCCGGAAGCTCTTAAGTGGAAACAGTTGCTTTACTTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTATCCGGAAGCTCTTAAGTGGAAACAGTTGCTTTACTTTGATG  350

seq1  GGATAAGATTAATATAGAATTAGAATAAAGCACTATAAGAATTTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGATTAATATAGAATTAGAATAAAGCACTATAAGAATTTCAAATG  400

seq1  TAATGTGATTCTTTCAAATTCTAGCTTTTAATAGTGTTCATTTAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATTCTTTCAAATTCTAGCTTTTAATAGTGTTCATTTAGAAACA  450

seq1  GGAGATGAAGATGGATATAGTGGTACATGGCCATCATCAGAGCACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAAGATGGATATAGTGGTACATGGCCATCATCAGAGCACTGGGG  500

seq1  AGGTGGACACAGGATGCTCCAGGTCAACCGAGGCTACACAGTGAGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACACAGGATGCTCCAGGTCAACCGAGGCTACACAGTGAGACCTC  550

seq1  ATCATACAAGTTGCTGTCATTCACATTGCTCCTCCACAATGCTCCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAAGTTGCTGTCATTCACATTGCTCCTCCACAATGCTCCCCCTG  600

seq1  TTCCATCCCCAGCTGGTAACAGCACTGAGTGCTCAGTCAGAGGGAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCCAGCTGGTAACAGCACTGAGTGCTCAGTCAGAGGGAGAGTG  650

seq1  ACAGAAGGTGAAAGCACCACACCAGGCCTACAGTAGGTGTACAAGGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTGAAAGCACCACACCAGGCCTACAGTAGGTGTACAAGGCCTA  700

seq1  CAGTAGGTGAGCATCTACATAATGTCTAGTTGTGGCAGCTGAAAACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTGAGCATCTACATAATGTCTAGTTGTGGCAGCTGAAAACCACA  750

seq1  CTGGTGCCACCAAGGCCTCCCCTGCCACATGCCATGTTTTCTAGTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCACCAAGGCCTCCCCTGCCACATGCCATGTTTTCTAGTCTCAG  800

seq1  ACCACTGCTCCTGTGATCTGTTCTCTTTGAAATGCACTCACACATGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCTCCTGTGATCTGTTCTCTTTGAAATGCACTCACACATGTGTC  850

seq1  TCAGCGTCTCCTTCATAACTAATGTATTTTGTCCTCAGGATAAAGTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTCTCCTTCATAACTAATGTATTTTGTCCTCAGGATAAAGTAATT  900

seq1  ATAAGCCACAAAATTGAACTCAACACAGAAAAGCAATTTCTGTTCTTGG-  949
      |||||||||||||||||||||||||||| ||||| |||||||||||||| 
seq2  ATAAGCCACAAAATTGAACTCAACACAG-AAAGC-ATTTCTGTTCTTGGT  948

seq1  TTCCCATCTCAGTCCTGAGGCTGTGTTTAGGAAAGGGCCCCTGTGAACAC  999
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TTCCCATCTCAGTCCTGA-GCTGTGTTTAGGAAAGGGCCCCTGTG-ACAC  996

seq1  AAGTCAGGAATATAATGGACTGAATACTGAACCATTGCTAGGAATTAAAA  1049
       |||||||||||||||||||||||||||| | |||||||||||  | |||
seq2  -AGTCAGGAATATAATGGACTGAATACTG-ATCATTGCTAGGA--TTAAA  1042

seq1  CAAAAGTAAAAGAAATGGCCTTGCAATTGCTGA-TCTAAACACCGGCATT  1098
      | ||||| |||||||||  | ||||| |||||| |||||||||| |||  
seq2  CCAAAGT-AAAGAAATG--CCTGCAA-TGCTGATTCTAAACACC-GCA--  1085

seq1  TACTTTTGGAGAAGTTC-ATATATCTTCCTGCAAAAACTGCCAACTTATC  1147
      ||| || | |||||||| ||||| | ||||||  || ||||  |||||||
seq2  TACCTTGGAAGAAGTTCAATATAGC-TCCTGC--AACCTGC--ACTTATC  1130

seq1  CTTCGTCCTCCTTG-ACATAT-CCAACTGGG  1176
      | |||||||||||| |||||| |||||||||
seq2  CATCGTCCTCCTTGAACATATCCCAACTGGG  1161


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