BAC Information

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BAC

Clone NameB6Ng01-291C01
Chromosome2 (Build37)
Map Location 80,908,481 - 81,081,244
singlet/doubletdoublet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291C01.bB6Ng01-291C01.g
ACCGA088097GA088098
length1,0451,191
definitionB6Ng01-291C01.b B6Ng01-291C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,908,481 - 80,909,306)(81,080,047 - 81,081,244)
sequence
gaattctttagaaaaaatatgatgccccatgggtgtggatttctgtctgg
gtttttaattaaatttcaatgatcattgtgtctatttttataccaacacc
atgaggttttcattactatatatctgtagtacagcttgaaatcaggaatg
ataatatctccatcagttgtttcactgtttcagattgttttagctatctt
gggttttgtgatgttccatatgaagttgggaattgtcctttcaaggtctg
taaagaaatgccttggaattttgatggggattgaattggaactgtaaatt
gcttttggtatttttttactgtattaatcctgtattaatcctactgatcc
atgagcttggaagattattccatgttttggtgttttctttctttctttct
ctatttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttcaaagacttaagttttttatcataaaagttttttacttg
cttggttagtgttgcctcaagatattaatactataaaattcctttatcat
ggttaggtatatttcttgtatcattagtctttcttgaacttgtatcatga
aggggtgttggagttttttcaaaggctgtcttttttggcataatgaaatg
atcatttttcccctatcattttgtttatgggtgtattacacagactgatt
ttcttttcttttcttttttttttttttttgcttgtgaaaattgaagttat
tagtataaaataacattgacagacacatgtcagtcgaattacagagtttt
tcactgttagatgatttggaaatcagctgtgtttttctgtggtcttatct
tagaagtttgccagagattgacgatccaggtatcctcagtttaatttgct
ctgccagtttcttttttttccattttttattagtatttagctcattacat
ttcaatgctataccaaaagtccctcatatctacccaccccactcccctgc
cacccactcccttttgggcctgggttcctgtactgaggcatataa

gaattcatctctgggtcttcaattctgttccattggtctacttgtctgtc
actataccagtaccatgccgtttttatcacaattgctctgtagtacagct
ttaggtcaggcatggtgattccaccagaggttctcttatccttgagaaga
gtttttgctatcctcggttttttgttattccagatgaatctgccgattgc
cctttctaattcgttgaagaattgagttggaattttgatggggattgcat
tgaatctgtagattgcttttggcaagatagccatttttacaatgttgatt
ctgccaatccatgagcatgggagatctttccatcttctgagatgttcttt
aatttctttcttttctaaccatatgcaacccttgtttagatttgtttggt
tttgtgctgctagtattcataaaattgaaggtggctggggagcaggggtt
tttagaggcatcatagcctaaaatcagacagaagacttccctgcagcata
tctacctgtgagtcccccatgctcctgtaagtcacctccaataaattcat
gctaagttcagcctttcactcatatggacttaaatataattctaaccttg
gactattagtgtcctttccatctggatcaaacagacacctctatgaactg
cctcagggaaacccacacagtaaatacagatccaatttctttatactcat
ttaatgattaaatgagttatctttttcaagtatattttaatgtggagtat
taagagaatacgaaaatcaaaacatcactaaattagctgtgaagcttaca
gatgggaaatataattaacctgttaaaaacagaaatggaattcatagcaa
ttccagtcttgggatatactactagacatttacgcttcatattatttgag
aagctacagaaagaatggtagaaatgataagtattaagtgttacataatt
ataacatatagttaacatctataaaatcagcaccatttaaaataatagtt
gatgtaaattacacagctggtagacagtaaaatgggaaacaagaaagtag
atatcagatctctgacttgaacttacaccgccattgtcattcaggtggcc
tttcttgaccttggccactgggattcccaatacgctcaaggcgactcctc
acctcctgatgtgatcctctattaccactccaatacctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80908481_80909306
seq2: B6Ng01-291C01.b_278_1089

seq1  TGTCCTTTCAAGGTCTGTAAAGAAATGCCTTGGAATTTTGATGGGGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCAAGGTCTGTAAAGAAATGCCTTGGAATTTTGATGGGGATTG  50

seq1  AATTGGAACTGTAAATTGCTTTTGGTATTTTTTTACTGTATTAATCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACTGTAAATTGCTTTTGGTATTTTTTTACTGTATTAATCCTGT  100

seq1  ATTAATCCTACTGATCCATGAGCTTGGAAGATTATTCCATGTTTTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCTACTGATCCATGAGCTTGGAAGATTATTCCATGTTTTGGTGT  150

seq1  TTTCTTTCTTTCTTTCTCTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTCTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  200

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTCAAAGACTTAAGTTTTTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTCAAAGACTTAAGTTTTTTATCA  250

seq1  TAAAAGTTTTTTACTTGCTTGGTTAGTGTTGCCTCAAGATATTAATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTTTTACTTGCTTGGTTAGTGTTGCCTCAAGATATTAATACTA  300

seq1  TAAAATTCCTTTATCATGGTTAGGTATATTTCTTGTATCATTAGTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCTTTATCATGGTTAGGTATATTTCTTGTATCATTAGTCTTTC  350

seq1  TTGAACTTGTATCATGAAGGGGTGTTGGAGTTTTTTCAAAGGCTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGTATCATGAAGGGGTGTTGGAGTTTTTTCAAAGGCTGTCTTT  400

seq1  TTTGGCATAATGAAATGATCATTTTTCCCCTATCATTTTGTTTATGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAATGAAATGATCATTTTTCCCCTATCATTTTGTTTATGGGTG  450

seq1  TATTACACAGACTGATTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACAGACTGATTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTGCTT  500

seq1  GTGAAAATTGAAGTTATTAGTATAAAATAACATTGACAGACACATGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATTGAAGTTATTAGTATAAAATAACATTGACAGACACATGTCAG  550

seq1  TCGAATTACAGAGTTTTTCACTGTTAGATGATTTGGAAATCAGCTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATTACAGAGTTTTTCACTGTTAGATGATTTGGAAATCAGCTGTGTT  600

seq1  TTTCTGTGGTCTTATCTTAGAAGTTTGCCAGAGATTGACGATCCAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGTCTTATCTTAGAAGTTTGCCAGAGATTGACGATCCAGGTAT  650

seq1  CCTCAGGTTTAATTTGCTCTGCCAGTTTTCTTTTTTTTTCCATTTTTTAT  700
      ||||| ||||||||||||||||||||||   |||||||||||||||||||
seq2  CCTCA-GTTTAATTTGCTCTGCCAGTTT--CTTTTTTTTCCATTTTTTAT  697

seq1  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  750
      || |||||||||||| |||||||| ||||||||||||||||||||| |||
seq2  TA-GTATTTAGCTCA-TTACATTT-CAATGCTATACCAAAAGTCCCTCAT  744

seq1  ATCTACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTG  800
      ||||||||| ||||||||||||| ||||||||||||   |||||| ||||
seq2  ATCTACCCA-CCCCACTCCCCTG-CCACCCACTCCC---TTTTGGGCCTG  789

seq1  GTGTTCCCCTGTACTGGGGCATATAA  826
      | |||  ||||||||| |||||||||
seq2  G-GTT--CCTGTACTGAGGCATATAA  812


seq1: chr2_81080047_81081244
seq2: B6Ng01-291C01.g_65_1255 (reverse)

seq1  TGTA-GTATT-GAGTGGTAATAAGAGGATTCCACATCAGGAGGTGAGGAA  48
      |||| ||||| |||||||||| |||||||  ||||||||||||||||| |
seq2  TGTAGGTATTGGAGTGGTAAT-AGAGGAT--CACATCAGGAGGTGAGG-A  46

seq1  GTTCGCTGGAGCTTAT--GGAATCCAGGTGGCAGAGGTTCAGGAAGGCCA  96
      ||   || |||| |||  |||||||  |||||  ||||  || |||||||
seq2  GTCGCCTTGAGCGTATTGGGAATCCCAGTGGCCAAGGTCAAGAAAGGCCA  96

seq1  -CTGAATGACATTGCGGGTGTAAGTTCAAGTCAGAGATTCTGATATTCCT  145
       |||||||||| ||  ||||||||||||||||||||| ||||||||  ||
seq2  CCTGAATGACAATGGCGGTGTAAGTTCAAGTCAGAGA-TCTGATAT--CT  143

seq1  AACTGTCCTTGTTTCCCATTTTACTGTCTTCCCAGCTGTGTAATTTACAT  195
       ||| | ||||||||||||||||||||| | |||||||||||||||||||
seq2  -ACT-TTCTTGTTTCCCATTTTACTGTC-TACCAGCTGTGTAATTTACAT  190

seq1  CACCTATTATTTTAAATGGTTGCTGATTTTTATAGATGTTAACTATATGT  245
      || |||||||||||||||| |||||| |||||||||||||||||||||||
seq2  CAACTATTATTTTAAATGG-TGCTGA-TTTTATAGATGTTAACTATATGT  238

seq1  TATAATTATGTAACACTTAATACTTATCATTTCTACCATTCTTTCTGTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATGTAACACTTAATACTTATCATTTCTACCATTCTTTCTGTAG  288

seq1  CTTCTCAAATAATATGAAGCGTAAATGTCTAGTAGTATATCCCAAGACTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAATAATATGAAGCGTAAATGTCTAGTAGTATATCCCAAGACTG  338

seq1  GAATTGCTATGAATTCCATTTCTGTTTTTAACAGGTTAATTATATTTCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTATGAATTCCATTTCTGTTTTTAACAGGTTAATTATATTTCCC  388

seq1  ATCTGTAAGCTTCACAGCTAATTTAGTGATGTTTTGATTTTCGTATTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAGCTTCACAGCTAATTTAGTGATGTTTTGATTTTCGTATTCTC  438

seq1  TTAATACTCCACATTAAAATATACTTGAAAAAGATAACTCATTTAATCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTCCACATTAAAATATACTTGAAAAAGATAACTCATTTAATCAT  488

seq1  TAAATGAGTATAAAGAAATTGGATCTGTATTTACTGTGTGGGTTTCCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGTATAAAGAAATTGGATCTGTATTTACTGTGTGGGTTTCCCTG  538

seq1  AGGCAGTTCATAGAGGTGTCTGTTTGATCCAGATGGAAAGGACACTAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCATAGAGGTGTCTGTTTGATCCAGATGGAAAGGACACTAATA  588

seq1  GTCCAAGGTTAGAATTATATTTAAGTCCATATGAGTGAAAGGCTGAACTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGTTAGAATTATATTTAAGTCCATATGAGTGAAAGGCTGAACTT  638

seq1  AGCATGAATTTATTGGAGGTGACTTACAGGAGCATGGGGGACTCACAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAATTTATTGGAGGTGACTTACAGGAGCATGGGGGACTCACAGGT  688

seq1  AGATATGCTGCAGGGAAGTCTTCTGTCTGATTTTAGGCTATGATGCCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCTGCAGGGAAGTCTTCTGTCTGATTTTAGGCTATGATGCCTCT  738

seq1  AAAAACCCCTGCTCCCCAGCCACCTTCAATTTTATGAATACTAGCAGCAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCTGCTCCCCAGCCACCTTCAATTTTATGAATACTAGCAGCAC  788

seq1  AAAACCAAACAAATCTAAACAAGGGTTGCATATGGTTAGAAAAGAAAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACAAATCTAAACAAGGGTTGCATATGGTTAGAAAAGAAAGAA  838

seq1  ATTAAAGAACATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAACATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG  888

seq1  CAGAATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT  938

seq1  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAA  988

seq1  AGGGCAATCGGCAGATTCATCTGGAATAACAAAAAACCGAGGATAGCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCGGCAGATTCATCTGGAATAACAAAAAACCGAGGATAGCAAA  1038

seq1  AACTCTTCTCAAGGATAAGAGAACCTCTGGTGGAATCACCATGCCTGACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTCAAGGATAAGAGAACCTCTGGTGGAATCACCATGCCTGACC  1088

seq1  TAAAGCTGTACTACAGAGCAATTGTGATAAAAACGGCATGGTACTGGTAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTACTACAGAGCAATTGTGATAAAAACGGCATGGTACTGGTAT  1138

seq1  AGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAA  1188

seq1  TTC  1198
      |||
seq2  TTC  1191


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