BAC Information

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BAC

Clone NameB6Ng01-292M11
Chromosome2 (Build37)
Map Location 46,520,327 - 46,649,703
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M11.bB6Ng01-292M11.g
ACCGA089328GA089329
length1,132457
definitionB6Ng01-292M11.b B6Ng01-292M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,520,327 - 46,521,677)(46,649,241 - 46,649,703)
sequence
gaattcccagtctctcttcaatagtgtgtttttaagagggaaacattcag
ccaaacctatgtgtattaacaccatctagtctctgcatatgcacctgcag
agttctgctcctaaaggggctgccttaggggctttgtctgtgttgcctga
gtgctaaagcaacttctgatgctcagagagaagaaacccaacccttgcac
agtaccaggaatgatgatgagaggggagttctagtaactaggcaagaact
aagaaaagagtattaaagtgagataaagccccatctcaggaaggaaaggt
gtcaggcagagtcagttttctttaaccctttgtttttctgctggagcttc
cccagaaattcttgctgaactgggaaaccagctggtgttctactgcagtt
ctggcttctgcatctttattatagagtgaggcatctatgaaatgcctcca
catatgaactgcaggcaattaaaatcaagaaacgtcaatatttagaataa
taataataatcaaaataatagaatttgaggttctttgatgataggaatgt
agttatttatttatttctatttatttatttatttatttatttatttattt
atttatttatttattggtctgaatacacacctttaagatttccctaagag
cttgggaaatgctagctaacactgctcagtttcctcgccgacatgacact
gaccacttcagtaagtgccttttgacttggacattccacagcactgcagc
tgacctccacagaacgcctgctagcacatgcacaggagaggttgtgatgt
ctgaattttagtttgaatgctctgaaagcaacttataagcaggagttttg
taaatagttaagctcaatagtaaagcccttgtttagcatctgtagtctca
agcactatagaattgagagagagagagagagagagagagagagagagagt
atgttaaatgctaataatgcttctacaatttcaaagtgaaaaataagccc
caagggactttgaatgtacggtctgtttgtttcaccgacgtgatggagct
ttgtgtcacatcatgggacctctcatgcaaataagttactaaataatctc
aataggacttgtaataatagattgacttcaga

tctaagagtgtgattttgcttcattcagtatgttaaaacctgaatagaac
aaaagagtgactagaaaggttttgctccctcagtacggacattggctttc
tgattttgtacttgaatctgcactactcattctcttggctttggattcac
acagtattcaccttatagatttgataattagctgtcatctttaatgagta
caagcacatgtgactgtacttgtgcatgcatgtgtataggtgtgttttat
tttttgtagactttcagaaatactgccagagttgttgcgagctatctgat
taataatgaattattgaggatgcttttattagaatttgaaagaaaaatac
taggtaagcaaccctgtaaataaatctcatcagctgcccagatgaagaag
ataagaaataaaaatatagagcagaggagaagggaggggatttgagggga
ggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46520327_46521677
seq2: B6Ng01-292M11.b_49_1180

seq1  GAATTCCCAGTCTCTCTTCAATAGTGTGTTTTTAAGAGGGAAACATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTCTCTCTTCAATAGTGTGTTTTTAAGAGGGAAACATTCAG  50

seq1  CCAAACCTATGTGTATTAACACCATCTAGTCTCTGCATATGCACCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTATGTGTATTAACACCATCTAGTCTCTGCATATGCACCTGCAG  100

seq1  AGTTCTGCTCCTAAAGGGGCTGCCTTAGGGGCTTTGTCTGTGTTGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCTCCTAAAGGGGCTGCCTTAGGGGCTTTGTCTGTGTTGCCTGA  150

seq1  GTGCTAAAGCAACTTCTGATGCTCAGAGAGAAGAAACCCAACCCTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAAGCAACTTCTGATGCTCAGAGAGAAGAAACCCAACCCTTGCAC  200

seq1  AGTACCAGGAATGATGATGAGAGGGGAGTTCTAGTAACTAGGCAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAGGAATGATGATGAGAGGGGAGTTCTAGTAACTAGGCAAGAACT  250

seq1  AAGAAAAGAGTATTAAAGTGAGATAAAGCCCCATCTCAGGAAGGAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGTATTAAAGTGAGATAAAGCCCCATCTCAGGAAGGAAAGGT  300

seq1  GTCAGGCAGAGTCAGTTTTCTTTAACCCTTTGTTTTTCTGCTGGAGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCAGAGTCAGTTTTCTTTAACCCTTTGTTTTTCTGCTGGAGCTTC  350

seq1  CCCAGAAATTCTTGCTGAACTGGGAAACCAGCTGGTGTTCTACTGCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATTCTTGCTGAACTGGGAAACCAGCTGGTGTTCTACTGCAGTT  400

seq1  CTGGCTTCTGCATCTTTATTATAGAGTGAGGCATCTATGAAATGCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTGCATCTTTATTATAGAGTGAGGCATCTATGAAATGCCTCCA  450

seq1  CATATGAACTGCAGGCAATTAAAATCAAGAAACGTCAATATTTAGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAACTGCAGGCAATTAAAATCAAGAAACGTCAATATTTAGAATAA  500

seq1  TAATAATAATCAAAATAATAGAATTTGAGGTTCTTTGATGATAGGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATCAAAATAATAGAATTTGAGGTTCTTTGATGATAGGAATGT  550

seq1  AGTTATTTATTTATTTCTATTTATTTATTTATTTATTTATTTATTTATTT  600
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  AGTTATTTATTTATTTC----TATTTATTTATTTATTTATTTATTTATTT  596

seq1  ATTTATTTATTTATTTATTGGTCTGAATACACACCTTTAAGATTTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTGGTCTGAATACACACCTTTAAGATTTCCCTA  646

seq1  AGAGCTTGGGAAATGCTAGCTAACACTGCTCAGTTTCCTCGCCGACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGGGAAATGCTAGCTAACACTGCTCAGTTTCCTCGCCGACATGA  696

seq1  CACTGACCACTTCAGTAAGTGCCTTTTGACTTGGACATTCCACAGCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCACTTCAGTAAGTGCCTTTTGACTTGGACATTCCACAGCACTG  746

seq1  CAGCTGACCTCCACAGAACGCCTGCTAGCACATGCACAGGAGAGGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACCTCCACAGAACGCCTGCTAGCACATGCACAGGAGAGGTTGTG  796

seq1  ATGTCTGAATTTTAGTTTGAATGCTCTGAAAGCAACTTATAAGCAGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAATTTTAGTTTGAATGCTCTGAAAGCAACTTATAAGCAGGAGT  846

seq1  TTTGTAAATAGTTAAGCTCAATAGTAAAGCCCTTGTTTAGCATCTGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATAGTTAAGCTCAATAGTAAAGCCCTTGTTTAGCATCTGTAGT  896

seq1  CTCAAGCACTATAGAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCACTATAGAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  946

seq1  GAGTATGTTAAATGCTAAATAATGCTTCTACCATTTCAAAGTGAAAAATA  1000
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  GAGTATGTTAAATGCT-AATAATGCTTCTACAATTTCAAAGTGAAAAATA  995

seq1  AGCCCCAAGGGACTTTGAAATGTAAGGGTCTGTTTGTTTTCACGAACGTG  1050
      ||||||||||||||||| ||||| | |||||||||| ||||||  |||||
seq2  AGCCCCAAGGGACTTTG-AATGT-ACGGTCTGTTTG-TTTCACCGACGTG  1042

seq1  AT-GAGCTTTGTGTCACATTCATGG--ACTCTCATGCAAAAATAAATTAC  1097
      || ||||||||||||||| ||||||   |||||||||  |||||| ||||
seq2  ATGGAGCTTTGTGTCACA-TCATGGGACCTCTCATGC--AAATAAGTTAC  1089

seq1  TTAAAATAAATCTCAATA-GACTTGTAATAATAGATTTGAACTCAGAAGA  1146
      |  |||| |||||||||| |||||||||||||||| ||||  |||||   
seq2  T--AAAT-AATCTCAATAGGACTTGTAATAATAGA-TTGACTTCAGA---  1132

seq1  ATGTAATGTCTTAATTCTTTACTTTGCTGTCTCTTCTATGATTTATTCAC  1196
                                                        
seq2  --------------------------------------------------  1132

seq1  AGACCAAACCAGAGAAATCTCACTGATCTTTTTCTTAAAGTAAGATCATC  1246
                                                        
seq2  --------------------------------------------------  1132

seq1  TGATGTATTTCTCAGTGTATTTATATTTGAGAATTGCCCTTGTGAGAGGA  1296
                                                        
seq2  --------------------------------------------------  1132

seq1  AGAGGCGCTCTTAACCCTTTTTATTCTCTTCTCCACAGAAGTCCTGGACT  1346
                                                        
seq2  --------------------------------------------------  1132

seq1  TCAGA  1351
           
seq2  -----  1132


seq1: chr2_46649241_46649703
seq2: B6Ng01-292M11.g_65_527 (reverse)

seq1  TCTCCCCTCCCCTCAAATCCCCTCCCTTCTCCTCTGCTCTATATTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCCCCTCAAATCCCCTCCCTTCTCCTCTGCTCTATATTTTTAT  50

seq1  TTCTTATCTTCTTCATCTGGGCAGCTGATGAGATTTATTTACAGGGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCTTCTTCATCTGGGCAGCTGATGAGATTTATTTACAGGGTTGC  100

seq1  TTACCTAGTATTTTTCTTTCAAATTCTAATAAAAGCATCCTCAATAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGTATTTTTCTTTCAAATTCTAATAAAAGCATCCTCAATAATTC  150

seq1  ATTATTAATCAGATAGCTCGCAACAACTCTGGCAGTATTTCTGAAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATCAGATAGCTCGCAACAACTCTGGCAGTATTTCTGAAAGTCT  200

seq1  ACAAAAAATAAAACACACCTATACACATGCATGCACAAGTACAGTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATAAAACACACCTATACACATGCATGCACAAGTACAGTCACAT  250

seq1  GTGCTTGTACTCATTAAAGATGACAGCTAATTATCAAATCTATAAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTACTCATTAAAGATGACAGCTAATTATCAAATCTATAAGGTGA  300

seq1  ATACTGTGTGAATCCAAAGCCAAGAGAATGAGTAGTGCAGATTCAAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGTGAATCCAAAGCCAAGAGAATGAGTAGTGCAGATTCAAGTAC  350

seq1  AAAATCAGAAAGCCAATGTCCGTACTGAGGGAGCAAAACCTTTCTAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAAAGCCAATGTCCGTACTGAGGGAGCAAAACCTTTCTAGTCA  400

seq1  CTCTTTTGTTCTATTCAGGTTTTAACATACTGAATGAAGCAAAATCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTTCTATTCAGGTTTTAACATACTGAATGAAGCAAAATCACAC  450

seq1  TCTTAGAGAATTC  463
      |||||||||||||
seq2  TCTTAGAGAATTC  463


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