BAC Information

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BAC

Clone NameB6Ng01-293N14
Chromosome2 (Build37)
Map Location 115,498,868 - 115,673,975
singlet/doubletdoublet
Overlap geneBC052040
Upstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N14.bB6Ng01-293N14.g
ACCGA090128GA090129
length1,0841,141
definitionB6Ng01-293N14.b B6Ng01-293N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,498,868 - 115,499,948)(115,672,828 - 115,673,975)
sequence
gaattcagtgatttggcatttttttctgtttcctttattttatttctagt
taataattaaatgagtgcagtcatgtgcattggaagaaggaagaaaaaca
gggcagaggcagttacggcggcttggccctgttctgctcatggacaagta
tgactctgtttcttgaatttcagtgatagtaacctgtaacccattgatag
agagcaggataattttctgctttttttttaaactcgtgatatataagttg
cctttgatttaagttgagggcttgcaatacatgatcagaagaaccctgtg
tcaggagctctgtacccatgtgctgctacggggctgggcagggtggacag
tgaaggagatacctctgactgcttctattaactgctttcagaagaactga
cagaccaaaagagcgtaagacttttggagacttggtatcatctctttcct
tcacaaaagagaacaaacttcaaagttttgccactggcttcattatttat
gagtcgtaggccttgagctccatcctcagcgttgctgaaccatgttttac
atgactgagaccgtgaacctgagatcatctatccactctcggccctgtcg
tgtagatttaacgctgtcagtatttagcataaaggcttccgacatggtcc
ttaggaatcactaagtattaacaagtatttatataattctgatgcttttg
ggaaaaataggatcgaattcaggccttggagtgggctcattcctgccttg
tttacttgttttgttctcctttactgcctcagatggaactcatgttgtca
agacagctaggtagacactaggttgtgctgtgccaccaacccctcttccc
tggctttcccacacattgactgcctctgtgcgttttcttctctgagtcac
tcccctcatctgtaaaacagctttttaatacttgtgaggatcagataaca
tgctgaaattgacttgtttatgatgcttgccatcaagaaagcactgggaa
cagtttattatgttttctgggaacatctgttcatgtgcatttgtgtgcta
aaatgtacacacacacgcacacacacacacacac

gaattcaaggccagccagacctacagaggaaaagtctatctccagaaaag
aaagaaagtgaaagaatcaaaacaacaatagcagcagcagcaacagcagc
agcagcagcaacaacaacaaaaacccaagaatttagaaatataaaaagac
aaactgtatcttcctcttgattagactcggtggggtttctgagagctctt
tggaagggatgccagaggtctggcattgaatgagctcagcttctttctcc
aactcatttctgcaagggtgtgtgattaggagcccatcaaactctgtcct
tatgacgtcagagtttgctttgcagatccacttggaaaaaggagacaagg
tgcattcaacacagaaacacaaaataagcatccttaaaaaaacacaaaca
attcaataaatactcctcagattgttctgaaaaacaaaacaaaacaaaac
aaacaaaaacaaaacaacaaaaaaaacccaaaaaacaaaaaactgctcaa
ccacatgttcctcctcccctacaatctaaagtagatatttgtgataaatt
gatgctttgtgtatagcctgcctcaatttgtctcctttctttaagaatgt
aatatttttaaaggagcgtttcgactgacaacagttcacttgaattcacc
aaccttgaaattgatgcatctcctatcagttgctttctggacatgcagtg
aaacatacttaatgtgtactcagtagtggctcacgcacatatgcttctat
ggacacttcatgttgctggagaacatgctatgggaaaatcacctggtttc
ttctgattgttacatttttaacctaatgaaaattcaaagtagactattca
ctagatgatttttggaacttagaggtgtgcttgaggtcatttgggtgtgg
tccctttatcgttctcacaaagaagtagaactttgaagatggtgactgac
taatccaaccaaagctacctagctctaatgtctgaaaagacaccagaggc
cataacttgaagtaattttttctattatatgtgcttccattttcttaatc
tctaacgaaatttatagcattaacaacttttctactaccattggcctggc
tgggtaatgaacgtattcctaataaacagtaataagatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115498868_115499948
seq2: B6Ng01-293N14.b_46_1129

seq1  GAATTCAGTGATTTGGCATTTTTTTCTGTTTCCTTTATTTTATTTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATTTGGCATTTTTTTCTGTTTCCTTTATTTTATTTCTAGT  50

seq1  TAATAATTAAATGAGTGCAGTCATGTGCATTGGAAGAAGGAAGAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAAATGAGTGCAGTCATGTGCATTGGAAGAAGGAAGAAAAACA  100

seq1  GGGCAGAGGCAGTTACGGCGGCTTGGCCCTGTTCTGCTCATGGACAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGCAGTTACGGCGGCTTGGCCCTGTTCTGCTCATGGACAAGTA  150

seq1  TGACTCTGTTTCTTGAATTTCAGTGATAGTAACCTGTAACCCATTGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGTTTCTTGAATTTCAGTGATAGTAACCTGTAACCCATTGATAG  200

seq1  AGAGCAGGATAATTTTCTGCTTTTTTTTTAAACTCGTGATATATAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGATAATTTTCTGCTTTTTTTTTAAACTCGTGATATATAAGTTG  250

seq1  CCTTTGATTTAAGTTGAGGGCTTGCAATACATGATCAGAAGAACCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATTTAAGTTGAGGGCTTGCAATACATGATCAGAAGAACCCTGTG  300

seq1  TCAGGAGCTCTGTACCCATGTGCTGCTACGGGGCTGGGCAGGGTGGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTCTGTACCCATGTGCTGCTACGGGGCTGGGCAGGGTGGACAG  350

seq1  TGAAGGAGATACCTCTGACTGCTTCTATTAACTGCTTTCAGAAGAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGATACCTCTGACTGCTTCTATTAACTGCTTTCAGAAGAACTGA  400

seq1  CAGACCAAAAGAGCGTAAGACTTTTGGAGACTTGGTATCATCTCTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAAAGAGCGTAAGACTTTTGGAGACTTGGTATCATCTCTTTCCT  450

seq1  TCACAAAAGAGAACAAACTTCAAAGTTTTGCCACTGGCTTCATTATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGAGAACAAACTTCAAAGTTTTGCCACTGGCTTCATTATTTAT  500

seq1  GAGTCGTAGGCCTTGAGCTCCATCCTCAGCGTTGCTGAACCATGTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGTAGGCCTTGAGCTCCATCCTCAGCGTTGCTGAACCATGTTTTAC  550

seq1  ATGACTGAGACCGTGAACCTGAGATCATCTATCCACTCTCGGCCCTGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAGACCGTGAACCTGAGATCATCTATCCACTCTCGGCCCTGTCG  600

seq1  TGTAGATTTAACGCTGTCAGTATTTAGCATAAAGGCTTCCGACATGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTTAACGCTGTCAGTATTTAGCATAAAGGCTTCCGACATGGTCC  650

seq1  TTAGGAATCACTAAGTATTAACAAGTATTTATATAATTCTGATGCTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATCACTAAGTATTAACAAGTATTTATATAATTCTGATGCTTTTG  700

seq1  GGAAAAATAGGATCGAATTCAGGCCTTGGAGTGGGCTCATTCCTGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATAGGATCGAATTCAGGCCTTGGAGTGGGCTCATTCCTGCCTTG  750

seq1  TTTACTTGTTTTGTTCTCCTTTACTGCCTCAGATGGAACTCAGGTTGTCA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTACTTGTTTTGTTCTCCTTTACTGCCTCAGATGGAACTCATGTTGTCA  800

seq1  AGACAGCTAGGTAGACACTAGGTTGTGCTGTGCCACCAACCCCTCTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTAGGTAGACACTAGGTTGTGCTGTGCCACCAACCCCTCTTCCC  850

seq1  TGGCTTTCCCACACATTGACTGCCTCTGTGCGTTTTCTTCTCTGAGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCCACACATTGACTGCCTCTGTGCGTTTTCTTCTCTGAGTCAC  900

seq1  TCCCCTCATCTGTAAAACAAGCTTTTT-ATACTTGTGAGGATCAGATAAC  949
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  TCCCCTCATCTGTAAAAC-AGCTTTTTAATACTTGTGAGGATCAGATAAC  949

seq1  ATGCTGAAA-TGACTTG-TTATGATGCTTGCCATCAAGAAAGCACT-GGA  996
      ||||||||| ||||||| |||||||||||||||||||||||||||| |||
seq2  ATGCTGAAATTGACTTGTTTATGATGCTTGCCATCAAGAAAGCACTGGGA  999

seq1  ACAGTTTA-TATG-TTTCTGGGAACATCTGTTCATGTGCATTTGTGTGCT  1044
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATTATGTTTTCTGGGAACATCTGTTCATGTGCATTTGTGTGCT  1049

seq1  TAAAAATGTACACACACACGCACACACACACACACAC  1081
        |||||||||||||||||||||||||||||||||||
seq2  --AAAATGTACACACACACGCACACACACACACACAC  1084


seq1: chr2_115672828_115673975
seq2: B6Ng01-293N14.g_63_1203 (reverse)

seq1  AATATCTTATTACTGTTTAATAAGAATTACCCTGTCATTACACCAGCAGG  50
      ||||||||||||||||||| || ||||    |  ||||||| |||||  |
seq2  AATATCTTATTACTGTTTATTAGGAAT---ACGTTCATTAC-CCAGCCAG  46

seq1  GCAAATGTTAGTAGAAAAGTTTGTTAAATGCTATAAA-TTCTGTAGAGA-  98
      || |||| ||||||||||| ||||| ||||||||||| |||  |||||| 
seq2  GCCAATGGTAGTAGAAAAG-TTGTT-AATGCTATAAATTTCGTTAGAGAT  94

seq1  TAAGAAAATGGGAAGGCACCATATAATAAGAAAAATTAACTTCAAGTTAT  148
      |||||||||||  | ||| |||||||| ||||||| | ||||||||||||
seq2  TAAGAAAATGG--AAGCA-CATATAAT-AGAAAAAATTACTTCAAGTTAT  140

seq1  GGCCTCTGGTGTCTTTTCAGACATTAGAGCTAGGTAGCTTTGGTTGGATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGTGTCTTTTCAGACATTAGAGCTAGGTAGCTTTGGTTGGATT  190

seq1  AGTCAGTCACCATCTTCAAAGTTCTACTTCTTTGTGAGAACGATAAAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCACCATCTTCAAAGTTCTACTTCTTTGTGAGAACGATAAAGGG  240

seq1  ACCACA-CCAAATGACCTCAAGCACACCTCTAAGTTCCAAAAATCATCTA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCCAAATGACCTCAAGCACACCTCTAAGTTCCAAAAATCATCTA  290

seq1  GTGAATAGTCTACTTTGAATTTTCATTAGGTTAAAAATGTAACAATCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGTCTACTTTGAATTTTCATTAGGTTAAAAATGTAACAATCAGA  340

seq1  AGAAACCAGGTGATTTTCCCATAGCATGTTCTCCAGCAACATGAAGTGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGGTGATTTTCCCATAGCATGTTCTCCAGCAACATGAAGTGTC  390

seq1  CATAGAAGCATATGTGCGTGAGCCACTACTGAGTACACATTAAGTATGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGCATATGTGCGTGAGCCACTACTGAGTACACATTAAGTATGTT  440

seq1  TCACTGCATGTCCAGAAAGCAACTGATAGGAGATGCATCAATTTCAAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCATGTCCAGAAAGCAACTGATAGGAGATGCATCAATTTCAAGGT  490

seq1  TGGTGAATTCAAGTGAACTGTTGTCAGTCGAAACGCTCCTTTAAAAATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATTCAAGTGAACTGTTGTCAGTCGAAACGCTCCTTTAAAAATAT  540

seq1  TACATTCTTAAAGAAAGGAGACAAATTGAGGCAGGCTATACACAAAGCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTAAAGAAAGGAGACAAATTGAGGCAGGCTATACACAAAGCAT  590

seq1  CAATTTATCACAAATATCTACTTTAGATTGTAGGGGAGGAGGAACATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCACAAATATCTACTTTAGATTGTAGGGGAGGAGGAACATGTG  640

seq1  GTTGAGCAGTTTTTTGTTTTTTGGGTTTTTTTTGTTGTTTTGTTTTTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAGTTTTTTGTTTTTTGGGTTTTTTTTGTTGTTTTGTTTTTGTT  690

seq1  TGTTTTGTTTTGTTTTGTTTTTCAGAACAATCTGAGGAGTATTTATTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTTCAGAACAATCTGAGGAGTATTTATTGAA  740

seq1  TTGTTTGTGTTTTTTTAAGGATGCTTATTTTGTGTTTCTGTGTTGAATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGTTTTTTTAAGGATGCTTATTTTGTGTTTCTGTGTTGAATGC  790

seq1  ACCTTGTCTCCTTTTTCCAAGTGGATCTGCAAAGCAAACTCTGACGTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTCCTTTTTCCAAGTGGATCTGCAAAGCAAACTCTGACGTCAT  840

seq1  AAGGACAGAGTTTGATGGGCTCCTAATCACACACCCTTGCAGAAATGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGAGTTTGATGGGCTCCTAATCACACACCCTTGCAGAAATGAGT  890

seq1  TGGAGAAAGAAGCTGAGCTCATTCAATGCCAGACCTCTGGCATCCCTTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAAGCTGAGCTCATTCAATGCCAGACCTCTGGCATCCCTTCC  940

seq1  AAAGAGCTCTCAGAAACCCCACCGAGTCTAATCAAGAGGAAGATACAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTCTCAGAAACCCCACCGAGTCTAATCAAGAGGAAGATACAGTT  990

seq1  TGTCTTTTTATATTTCTAAATTCTTGGGTTTTTGTTGTTGTTGCTGCTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTATATTTCTAAATTCTTGGGTTTTTGTTGTTGTTGCTGCTGC  1040

seq1  TGCTGCTGTTGCTGCTGCTGCTATTGTTGTTTTGATTCTTTCACTTTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTTGCTGCTGCTGCTATTGTTGTTTTGATTCTTTCACTTTCTT  1090

seq1  TCTTTTCTGGAGATAGACTTTTCCTCTGTAGGTCTGGCTGGCCTTGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGGAGATAGACTTTTCCTCTGTAGGTCTGGCTGGCCTTGAATT  1140

seq1  C  1148
      |
seq2  C  1141


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