BAC Information

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BAC

Clone NameB6Ng01-293O11
Chromosome2 (Build37)
Map Location 24,898,564 - 25,049,628
singlet/doubletdoublet
Overlap genePnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41
Downstream geneA730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O11.bB6Ng01-293O11.g
ACCGA090170GA090171
length1,118930
definitionB6Ng01-293O11.b B6Ng01-293O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,898,564 - 24,899,672)(25,048,703 - 25,049,628)
sequence
gaattcttcactttgctcaaggggtactcaacagccatatagttctgtga
gataaaagaagcagtcatctgcctgcccctcccagagccaagtctacaag
actgcccagaagtgactacgttcaaccttccaacaatgagcatgcgctgc
tctctgtgaacactcgtggtccgtggctctgcctctgtctgtctcttgct
ctcatcgtcctcatgaggtcccagcactgcggcagccagcactgtgacag
cccgtgctgtgctggcagtgtgtgtgcggcattgtaagggtgcagctctt
tcagagatgaatcctatccatgggaccctgacatcatttccttcttagga
gtttctgactgctgtgtttgcttcagttccatttgcagtattattggtgt
actggcgaacactcccagagagagcactcacaccctctccatccagatcg
tctccttttgagatttctagggttgcgcaccctccagcccaccagtccct
catctttactgatgtctttccagctgactgttggacctgaaatttatctt
tgccaccatcctaacaagtgcctttgttttattcccttgtttagcttcat
tttctatatctcctgtcttcatctttgtagaaatctcctgcagaggctgt
gtgggaggtcacagtattagcattggacctgtccacaggccttctcctct
gctctcagacttgagcgagggtttggctaggcatagaattcagaatgaaa
atcatctctgagaatctgtgccagagttgtattgtgtgtgtagcttgggt
attgtcgagattaccaatactgtttactcagtgctctgactttcctgtcc
ctggagccttagggagttcttttaattttgttgtttggaaggatgtgcta
gcggctcagtgctgctgctgctggtctcacttgtgatgcagtcccccgag
accttttcacatttggaaatcgatgtggttgaaacttctaggagatggtt
cagttttaactatttgatgtatgtaggtattttatctgcatgtgcagctc
attgaatattcttattgtctgccgaagacctaagaagggttgtcggatcc
ctcttaaactgtaagtca
gaattcttcagatgctctggggcatgaacctaagaggagacccaccctcg
tgagactggctgcctgtttgccccagagacagacatgtagaatggcgttg
gaatcagctacaaggttcagggtcctgctcaccagaagagacccgagagg
agagacctctacctccagggagatgatgtgtcttcaccaccctggggaga
cctgggaaaccaccaagctcaggtttcccaagaaaggctcactggactcc
agtctgtcctactgctgaggaactcactggccccttcccttccctggctc
tggagtgacagcggttgagtccatagcaaactgggagccttggaagtgaa
ccctgctttgaggctgactcgatgtaggaagcaggaaacaagcatgaggc
ccagtggggtggggtcagtctgtgctgtgtggttgccacagttacacgtg
ggtgaggttccctgtagcctttggcagtcctaggttcaacctctccattt
gcttggaatttgcaaggcagaaaggaggcttcttagtactctggccgtgt
ctgtgctgccatcttgtggctgcacccagactttgcctgtgaatgctcat
cagtctgggttagaaagcggtgcctcccaaagtgtggcttgagggcacac
aggaagtggtgacactagaagcgattagagaggaggagcccctcaatggg
ggtgatatgtccctgcccacgcttgggggagaactgctgcaaaactaccc
agtcttaggtttccctagagaggattgctagtaggctccagtggaggtcc
cgttttgccgtgcgtggtctgaggatctggtgcatgacctgctgagtttg
gatgctgtttagttcttgcagattatgccaagaaggtctcctatgggttg
tcatctggaaatacttacctggaagtgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24898564_24899672
seq2: B6Ng01-293O11.b_49_1166

seq1  GAATTCTTCACTTTGCTCAAGGGGTACTCAACAGCCATATAGTTCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTTTGCTCAAGGGGTACTCAACAGCCATATAGTTCTGTGA  50

seq1  GATAAAAGAAGCAGTCATCTGCCTGCCCCTCCCAGAGCCAAGTCTACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAAGCAGTCATCTGCCTGCCCCTCCCAGAGCCAAGTCTACAAG  100

seq1  ACTGCCCAGAAGTGACTACGTTCAACCTTCCAACAATGAGCATGCGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAGAAGTGACTACGTTCAACCTTCCAACAATGAGCATGCGCTGC  150

seq1  TCTCTGTGAACACTCGTGGTCCGTGGCTCTGCCTCTGTCTGTCTCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAACACTCGTGGTCCGTGGCTCTGCCTCTGTCTGTCTCTTGCT  200

seq1  CTCATCGTCCTCATGAGGTCCCAGCACTGCGGCAGCCAGCACTGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGTCCTCATGAGGTCCCAGCACTGCGGCAGCCAGCACTGTGACAG  250

seq1  CCCGTGCTGTGCTGGCAGTGTGTGTGCGGCATTGTAAGGGTGCAGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTGTGCTGGCAGTGTGTGTGCGGCATTGTAAGGGTGCAGCTCTT  300

seq1  TCAGAGATGAATCCTATCCATGGGACCCTGACATCATTTCCTTCTTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGAATCCTATCCATGGGACCCTGACATCATTTCCTTCTTAGGA  350

seq1  GTTTCTGACTGCTGTGTTTGCTTCAGTTCCATTTGCAGTATTATTGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGACTGCTGTGTTTGCTTCAGTTCCATTTGCAGTATTATTGGTGT  400

seq1  ACTGGCGAACACTCCCAGAGAGAGCACTCACACCCTCTCCATCCAGATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGAACACTCCCAGAGAGAGCACTCACACCCTCTCCATCCAGATCG  450

seq1  TCTCCTTTTGAGATTTCTAGGGTTGCGCACCCTCCAGCCCACCAGTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTGAGATTTCTAGGGTTGCGCACCCTCCAGCCCACCAGTCCCT  500

seq1  CATCTTTACTGATGTCTTTCCAGCTGACTGTTGGACCTGAAATTTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTACTGATGTCTTTCCAGCTGACTGTTGGACCTGAAATTTATCTT  550

seq1  TGCCACCATCCTAACAAGTGCCTTTGTTTTATTCCCTTGTTTAGCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATCCTAACAAGTGCCTTTGTTTTATTCCCTTGTTTAGCTTCAT  600

seq1  TTTCTATATCTCCTGTCTTCATCTTTGTAGAAATCTCCTGCAGAGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATCTCCTGTCTTCATCTTTGTAGAAATCTCCTGCAGAGGCTGT  650

seq1  GTGGGAGGTCACAGTATTAGCATTGGACCTGTCCACAGGCCTTCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGTCACAGTATTAGCATTGGACCTGTCCACAGGCCTTCTCCTCT  700

seq1  GCTCTCAGACTTGAGCGAGGGTTTGGCTAGGCATAGAATTCAGAATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGACTTGAGCGAGGGTTTGGCTAGGCATAGAATTCAGAATGAAA  750

seq1  ATCATCTCTGAGAATCTGTGCCAGAGTTGTATTGTGTGTGTAGCTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTGAGAATCTGTGCCAGAGTTGTATTGTGTGTGTAGCTTGGGT  800

seq1  ATTGTCGAGATTACCAATACTGTTTACTCAGTGCTCTGACTTTCCTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGAGATTACCAATACTGTTTACTCAGTGCTCTGACTTTCCTGTCC  850

seq1  CTGGAGCCTTAGGGAGTTCTTTTAATTTTGTTGTTTGGAAGGATGTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTTAGGGAGTTCTTTTAATTTTGTTGTTTGGAAGGATGTGCTA  900

seq1  GCGGCTCAGTGCTGCTGCTGCTGGTCTCACTTGTGATGCAGTCCCCCGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCAGTGCTGCTGCTGCTGGTCTCACTTGTGATGCAGTCCCCCGAG  950

seq1  ACC-TTTCACATTTGGAAATCGATGTGGTTGAAAC-TCTAGGAGATGTTT  998
      ||| ||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ACCTTTTCACATTTGGAAATCGATGTGGTTGAAACTTCTAGGAGATGGTT  1000

seq1  CAGTTTTAACTATTTGATGTATGTAGGTATTTTATCTGCATGTGCAGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAACTATTTGATGTATGTAGGTATTTTATCTGCATGTGCAGCTC  1050

seq1  A-TGAATAT--CTATTGTCTGCAG-AGACCT-AGAGAGGGTGTCGGAT-C  1092
      | |||||||   |||||||||| | |||||| |||  || |||||||| |
seq2  ATTGAATATTCTTATTGTCTGCCGAAGACCTAAGAAGGGTTGTCGGATCC  1100

seq1  CTCTAGAACTGT-AGTCA  1109
      ||||  |||||| |||||
seq2  CTCTTAAACTGTAAGTCA  1118

seq1: chr2_25048703_25049628
seq2: B6Ng01-293O11.g_70_999 (reverse)

seq1  GGACACTTCCAGGTAGG--TTTTCAGGTGACAACCC-TAGG-GGCCTTCT  46
      ||||||||||||||| |  ||| ||| ||||||||| |||| | ||||||
seq2  GGACACTTCCAGGTAAGTATTTCCAGATGACAACCCATAGGAGACCTTCT  50

seq1  TGGCATAATCCTGCAAGAACTGAACAGCATCCAAACTCAGCAGGTCATGC  96
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  TGGCATAAT-CTGCAAGAACTAAACAGCATCCAAACTCAGCAGGTCATGC  99

seq1  ACCAGATCCTCAGACCACGCACGGC-AAACGGGACCTCCACTGGAGCCTA  145
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCAGATCCTCAGACCACGCACGGCAAAACGGGACCTCCACTGGAGCCTA  149

seq1  CTAGCAATCCTCTCTAGGGAAACCTAAGACTGGGTAGTTTTGCAGCAGTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATCCTCTCTAGGGAAACCTAAGACTGGGTAGTTTTGCAGCAGTT  199

seq1  CTCCCCCAAGCGTGGGCAGGGACATATCACCCCCATTGAGGGGCTCCTCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAGCGTGGGCAGGGACATATCACCCCCATTGAGGGGCTCCTCC  249

seq1  TCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATCGCTTCTAGTGTCACCACTTCCTGTGTGCCCTCAAGCCACAC  299

seq1  TTTGGGAGGCACCGCTTTCTAACCCAGACTGATGAGCATTCACAGGCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGGCACCGCTTTCTAACCCAGACTGATGAGCATTCACAGGCAAA  349

seq1  GTCTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTGCAGCCACAAGATGGCAGCACAGACACGGCCAGAGTACTAAG  399

seq1  AAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTTGAACCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCCTTTCTGCCTTGCAAATTCCAAGCAAATGGAGAGGTTGAACCT  449

seq1  AGGACTGCCAAAGGCTACAGGGAACCTCACCCACGTGTAACTGTGGCAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCCAAAGGCTACAGGGAACCTCACCCACGTGTAACTGTGGCAAC  499

seq1  CACACAGCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCACAGACTGACCCCACCCCACTGGGCCTCATGCTTGTTTCCTG  549

seq1  CTTCCTACATCGAGTCAGCCTCAAAGCAGGGTTCACTTCCAAGGCTCCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACATCGAGTCAGCCTCAAAGCAGGGTTCACTTCCAAGGCTCCCA  599

seq1  GTTTGCTATGGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTATGGACTCAACCGCTGTCACTCCAGAGCCAGGGAAGGGAAGGG  649

seq1  GCCAGTGAGTTCCTCAGCAGTAGGACAGACTGGAGTCCAGTGAGCCTTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAGTTCCTCAGCAGTAGGACAGACTGGAGTCCAGTGAGCCTTTC  699

seq1  TTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTGAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAACCTGAGCTTGGTGGTTTCCCAGGTCTCCCCAGGGTGGTGAAG  749

seq1  ACACATCATCTCCCTGGAGGTAGAGGTCTCTCCTCTCGGGTCTCTTCTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATCTCCCTGGAGGTAGAGGTCTCTCCTCTCGGGTCTCTTCTGG  799

seq1  TGAGCAGGACCCTGAACCTTGTAGCTGATTCCAACGCCATTCTACATGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGACCCTGAACCTTGTAGCTGATTCCAACGCCATTCTACATGTC  849

seq1  TGTCTCTGGGGCAAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGGGGCAAACAGGCAGCCAGTCTCACGAGGGTGGGTCTCCTCTT  899

seq1  AGGTTCATGCCCCAGAGCATCTGAAGAATTC  926
      |||||||||||||||||||||||||||||||
seq2  AGGTTCATGCCCCAGAGCATCTGAAGAATTC  930