BAC Information

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BAC

Clone NameB6Ng01-295A05
Chromosome2 (Build37)
Map Location 79,891,052 - 79,892,176
singlet/doubletsinglet
Overlap genePde1a
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295A05.bB6Ng01-295A05.g
ACCGA090993GA090994
length1,1261,180
definitionB6Ng01-295A05.b B6Ng01-295A05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgtaatatttctatgaatattatattgcatcatattaattag
ctttaaaatatctcctgaacatttattatttttataacaaaagattttaa
atggtaaaaaagaaagaaatcagacaagcgtgcagaagagtccagtcaaa
ggaagaactagtgcaggtgaggaacctccttacgtcagaggaagcagcaa
gcatcttggtatgactcgagggtataagtatgaaaaggtggaagggaaag
gctagagaaccagagcccagcttccatattccataccaaggaggtgaaac
tctagctggcagtcagcagtggaccactgatgctattgtcagagaagaga
accatctgctttactgataaaagcacagtgtagggttctcgaggatgaca
gtgaagaatgcagaggtctccgtcaaaagtttgtggcatgatctagtgat
atgttggccctcagcacataattttagtatgaaaagattgtttcacatat
cttcatcttcatttcatttttaagttgttaattttgatttctagaaaaat
caagttcttagatggtctctgcaccaaccatctaaaaccagcagtccaca
aatgttctttcaaccttgattcctgtgaaaaattaattgtcctgtgtttt
actggtgtaaaaagtactttatattggctggtttgacaaagaaatcaaaa
ctacttgtactacagcaaagaatacatcaagaagtctaacagtaggtaag
tactgtggagtgatggtatgctattagttataggtgacatatatcatcac
acagtcaggaatctgttctttctaattatattcagaaactacatattttc
attaattacagtaatgttctgtaataaataccatttccttatcatttttt
aaaaatgacacattccaaataaaattgctgatatttggggaaataaatga
actacacataaatttagacacactcaataattttatataatttgaatttt
ctaaattgtctaagttgtctgtttccagtactattttgtttctaaaaata
ctctgctaaacatttaggcaatactggttctgcttctgtcttttttccct
ccctcaagaaaaaaatgttcttcagt
gaattcttctgacaaatggagattctccagatatttaaaagttacactca
taagaattttgcaagtcctaggaaataggggtgttgtggtattgcattat
tcttgagaaggtctgctaagagcagaaccccctggtgctagccttcacac
tagggtgtgatatccttacctgtcattaagctgaccctaggcaggactgc
tttatctttactgtaaacatttacctggttcctgtaagtctctttgtagt
cattcctttgttttgtatcaggtaacttcaatgtactttgcctgctgtga
cttcctaccccttttattttctgtactatataagactggtgttcactttg
tgacaatacattcagattctacacaatctcacgtgttggtctgtctgtca
ttcacgccagccaactccttgcccatctgcacccagagacctgttacatg
cagacaagggacccagagggactgcggcactattctagtctcaggttctt
ggacacttccgcaatatcaggtataggttccatcccattgaatgggcctt
aactcaaccaaaaagtggttggttactactgtaacatttgtgccagtata
ttttgcaggaagatcactgttgtagatcaaagtatttgtatctaggtgat
actgatgaatacctgtctcttccaggagcttgcagattagtttagagcac
catcaacagtggtcagtatggatgaagcatctagctgggcacctgctcac
cttctcatgtttgatgacataagtaagcattgttcttagcagcccccaat
tgtacaggcaaatctatattttattagatcatatctttaaaagaactcag
aataatacaggtagcctacagtgttttcattgtaatataacagaactgga
tttttacaaaaggaattaaagaacttatgggcaaagcaattaattaccac
cttctagaacttattagctcttacagatgaagcacacagatttaaaagta
attgattttataattatattattatctattaacaaacaccctgagtactt
gataaatcatgaacaatgtgtgtgatgttacaattctttggaaaagcata
gatttatttagctgttgaattgaagaacgccaaaaaaaacctcaatcagc
tttaagattcttcgtgctcgcgtcctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79891052_79892176
seq2: B6Ng01-295A05.b_47_1172

seq1  GAATTCCATGTAATATTTCTATGAATATTATATTGCATCATATTAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAATATTTCTATGAATATTATATTGCATCATATTAATTAG  50

seq1  CTTTAAAATATCTCCTGAACATTTATTATTTTTATAACAAAAGATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATATCTCCTGAACATTTATTATTTTTATAACAAAAGATTTTAA  100

seq1  ATGGTAAAAAAGAAAGAAATCAGACAAGCGTGCAGAAGAGTCCAGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAAAAGAAAGAAATCAGACAAGCGTGCAGAAGAGTCCAGTCAAA  150

seq1  GGAAGAACTAGTGCAGGTGAGGAACCTCCTTACGTCAGAGGAAGCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACTAGTGCAGGTGAGGAACCTCCTTACGTCAGAGGAAGCAGCAA  200

seq1  GCATCTTGGTATGACTCGAGGGTATAAGTATGAAAAGGTGGAAGGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGGTATGACTCGAGGGTATAAGTATGAAAAGGTGGAAGGGAAAG  250

seq1  GCTAGAGAACCAGAGCCCAGCTTCCATATTCCATACCAAGGAGGTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAACCAGAGCCCAGCTTCCATATTCCATACCAAGGAGGTGAAAC  300

seq1  TCTAGCTGGCAGTCAGCAGTGGACCACTGATGCTATTGTCAGAGAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGGCAGTCAGCAGTGGACCACTGATGCTATTGTCAGAGAAGAGA  350

seq1  ACCATCTGCTTTACTGATAAAAGCACAGTGTAGGGTTCTCGAGGATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGCTTTACTGATAAAAGCACAGTGTAGGGTTCTCGAGGATGACA  400

seq1  GTGAAGAATGCAGAGGTCTCCGTCAAAAGTTTGTGGCATGATCTAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAATGCAGAGGTCTCCGTCAAAAGTTTGTGGCATGATCTAGTGAT  450

seq1  ATGTTGGCCCTCAGCACATAATTTTAGTATGAAAAGATTGTTTCACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCCCTCAGCACATAATTTTAGTATGAAAAGATTGTTTCACATAT  500

seq1  CTTCATCTTCATTTCATTTTTAAGTTGTTAATTTTGATTTCTAGAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTCATTTCATTTTTAAGTTGTTAATTTTGATTTCTAGAAAAAT  550

seq1  CAAGTTCTTAGATGGTCTCTGCACCAACCATCTAAAACCAGCAGTCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTAGATGGTCTCTGCACCAACCATCTAAAACCAGCAGTCCACA  600

seq1  AATGTTCTTTCAACCTTGATTCCTGTGAAAAATTAATTGTCCTGTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTTCAACCTTGATTCCTGTGAAAAATTAATTGTCCTGTGTTTT  650

seq1  ACTGGTGTAAAAAGTACTTTATATTGGCTGGTTTGACAAAGAAATCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTAAAAAGTACTTTATATTGGCTGGTTTGACAAAGAAATCAAAA  700

seq1  CTACTTGTACTACAGCAAAGAATACATCAAGAAGTCTAACAGTAGGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTACTACAGCAAAGAATACATCAAGAAGTCTAACAGTAGGTAAG  750

seq1  TACTGTGGAGTGATGGTATGCTATTAGTTATAGGTGACATATATCATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGAGTGATGGTATGCTATTAGTTATAGGTGACATATATCATCAC  800

seq1  ACAGTCAGGAATCTGTTCTTTCTAATTATATTCAGAAACTACATATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGAATCTGTTCTTTCTAATTATATTCAGAAACTACATATTTTC  850

seq1  ATTAATTACAGTAATGTTCTGTAATAAATACCATTTCCTTATCATTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACAGTAATGTTCTGTAATAAATACCATTTCCTTATCATTTTTT  900

seq1  AAAAATGACACATTCCAAATAAAATTGCTGATATTTGGGGAAATAAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACACATTCCAAATAAAATTGCTGATATTTGGGGAAATAAATGA  950

seq1  ACTACACATAAAATTTAAGACACACTCAATAATTTTATATAATTTGAATT  1000
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  ACTACACATAAA--TTTAGACACACTCAATAATTTTATATAATTTGAATT  998

seq1  TTCTAAATTGTCTAAGTTGTCTGTTTCCCAGTACTATT---TGTCTAAAA  1047
      |||||||||||||||||||||||||| |||||||||||   | |||||||
seq2  TTCTAAATTGTCTAAGTTGTCTGTTT-CCAGTACTATTTTGTTTCTAAAA  1047

seq1  ATACCTCTGCCTAAACATT--AGCAATACTGGTCTTGCTTCTGTC-TTTT  1094
      ||| ||||| |||||||||   |||||||||||  |||||||||| ||||
seq2  ATA-CTCTG-CTAAACATTTAGGCAATACTGGTTCTGCTTCTGTCTTTTT  1095

seq1  TCCCT-CCTCAGAAAAAAAAATGTTCTTCAGT  1125
      ||||| ||||| | ||||||||||||||||||
seq2  TCCCTCCCTCA-AGAAAAAAATGTTCTTCAGT  1126