BAC Information

Click to search

BAC

Clone NameB6Ng01-295G16
Chromosome2 (Build37)
Map Location 42,368,833 - 42,453,824
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295G16.bB6Ng01-295G16.g
ACCGA091286GA091287
length1,1431,081
definitionB6Ng01-295G16.b B6Ng01-295G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,452,678 - 42,453,824)(42,368,833 - 42,369,908)
sequence
gaattcattatatgatatatatttactgagcacatcttttgtttcaatct
tacattaaaaccttggacttagaggtcattaaggaataggtctgctgaac
aaattttatcaaatgcaaaaatgaactaagaatttttcattatcttttat
tttcaaaagatatttgaattctgacagcaccaaaacattagtaattttcc
ataactaactcccagatcctattaatatcaagaatatctgtacctaaatt
tagtagattttgccctaggtgaacacaaaaagattttataataaacatgt
gtctatttttactctacttagaccaggagaaaggccatgaataatgtcac
atatcattctagaactcgttaatatttaggtctatatgaggttttgtgag
ttgagtaattaatagaattctgaaattattttctgtgccagttcagatat
gctatggcttctgttacaaactaacctatcagacaatgccatgtagatat
gcccaatagctgcttcctatgtgtgtgcttatgtgagttgtagattgctc
agtgcccagaagtactgcatgccattttcatgatctgataatattcccat
ttactttaaagatgtatttggaaaatgtgattatgcagattaagctgaac
attacagggagcctccaaagactcatctttgaggatatccaaactgctat
gatcaggattcatgtactgaatcaggtcaacaaaatccctcctattgaat
gttttcttgctctattttaaagagaaagaagctatttaaaatgagtcttg
tacaggttttcaggactctttcttgacttccttgaattggaagtatgtat
cctattatgattttaatatatacttttcataaggcaggagatggaagaac
taaaaacatttaaaagtttgtacttttcatttttctctcctgttgtttgc
ctcataatacacttgaaagaacactaatatgcagtattccaaatttgttg
ctgtttctattagcataatagcattcttttcaacagaataaactcagaag
acactatttctatgagtagtttctaccatagaatatgtttcccattattg
ttttaattgtagcttagattccaattaagttccgaccattgga

gaattcaatattttaacaacaaggtaccttgatgttgttatttaaagaac
tacccaaattgtgcacatgtcttggaatttatagaaggcagaacccagag
cacagcagaaaatatgtgagagctagaaagcgagcaggataggacaaaaa
ggggactatttgtggaaatcaaattagtaaaaatatctgctgtgattcca
tataaaatctttcaaaaacatgataaaatttggtagagagttgtggattt
tagagaagtacacttctgatattactttaatcaactatttagttttcctc
tgaaatatcataaagtaacacagtaaaatttaactgaaaggaagtatttc
tacaaatattttataacaaggtatgtgattattaaggaactatttcttct
ctatgaagggtaaatatagattcaataagtaaaaaatgttagacacaatt
ttgttactgagtcatagttacttatttaattttattggtcatttttacag
aaataaattaactttaaggatgaaggcatataaatgaaaaacaattcatt
tttcatatttttatctttattaaacattttctttttaactatgtaataag
aagttaagctatgaaattcattcccattaaattaaagcaaacattacttc
aaataaagaattagttcccagattatctttaaaattcacattaaaatcag
tgtttttctttgttcacaatcacttttttccccaaatatgacactgactc
aatattcattccatcataacattaagttgctatttgtttgaggttactat
gtaaactttcactaattgagtaattaaaatagtattatatatatatatat
attgcttctgtagaattttatagcaaagttgtagaaattatcccaaatta
aaaaactgatatgttgaggatgtggagaaagaggaacactccttccattg
ttggtgggattgcaagcttgtacaaccactctggaatcaatctggcggta
cctaagaaaattggaacatagtactaccagaggatccagaaaataccttc
tttctggcataataccccagattatgtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42452678_42453824
seq2: B6Ng01-295G16.b_46_1188 (reverse)

seq1  TCCAATGGTCGAAATTTATTGGGAAATCT-AGCTACATTTAAAAC-ATAA  48
      ||||||||||| || ||| | || ||||| ||||||| ||||||| ||||
seq2  TCCAATGGTCGGAACTTAATTGG-AATCTAAGCTACAATTAAAACAATAA  49

seq1  TGGGGAAACATATTCTTATGGTTAGAAACTACTCATAGAAATAGTGTCTT  98
      | ||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  T-GGGAAACATATTC-TATGG-TAGAAACTACTCATAGAAATAGTGTCTT  96

seq1  CTGAGTTTA-TCTGTTGAAAAAGAATTGCTA-TATGCTAATAGAAACAGC  146
      ||||||||| ||||||| ||||||| ||||| ||||||||||||||||||
seq2  CTGAGTTTATTCTGTTG-AAAAGAA-TGCTATTATGCTAATAGAAACAGC  144

seq1  AACAAATTTGGAATACTTGCATATTAGTGTTTCTTTCAAGTGTATTATGA  196
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  AACAAATTTGGAATAC-TGCATATTAGTG-TTCTTTCAAGTGTATTATGA  192

seq1  GGCAAACAACAGGAGAGAAAAATGAAAAGTACAAACTTTTAAATGTTTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAACAGGAGAGAAAAATGAAAAGTACAAACTTTTAAATGTTTTT  242

seq1  AGTTCTTCCATCTCCTGCCTTATGAAAAGTATATATTAAAATCATAATAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCATCTCCTGCCTTATGAAAAGTATATATTAAAATCATAATAG  292

seq1  GATACATACTTCCAATTCAAGGAAGTCAAGAAAGAGTCCTGAAAACCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATACTTCCAATTCAAGGAAGTCAAGAAAGAGTCCTGAAAACCTGT  342

seq1  ACAAGACTCATTTTAAATAGCTTCTTTCTCTTTAAAATAGAGCAAGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTCATTTTAAATAGCTTCTTTCTCTTTAAAATAGAGCAAGAAAA  392

seq1  CATTCAATAGGAGGGATTTTGTTGACCTGATTCAGTACATGAATCCTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATAGGAGGGATTTTGTTGACCTGATTCAGTACATGAATCCTGAT  442

seq1  CATAGCAGTTTGGATATCCTCAAAGATGAGTCTTTGGAGGCTCCCTGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGTTTGGATATCCTCAAAGATGAGTCTTTGGAGGCTCCCTGTAA  492

seq1  TGTTCAGCTTAATCTGCATAATCACATTTTCCAAATACATCTTTAAAGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTAATCTGCATAATCACATTTTCCAAATACATCTTTAAAGTA  542

seq1  AATGGGAATATTATCAGATCATGAAAATGGCATGCAGTACTTCTGGGCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAATATTATCAGATCATGAAAATGGCATGCAGTACTTCTGGGCAC  592

seq1  TGAGCAATCTACAACTCACATAAGCACACACATAGGAAGCAGCTATTGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATCTACAACTCACATAAGCACACACATAGGAAGCAGCTATTGGG  642

seq1  CATATCTACATGGCATTGTCTGATAGGTTAGTTTGTAACAGAAGCCATAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTACATGGCATTGTCTGATAGGTTAGTTTGTAACAGAAGCCATAG  692

seq1  CATATCTGAACTGGCACAGAAAATAATTTCAGAATTCTATTAATTACTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGAACTGGCACAGAAAATAATTTCAGAATTCTATTAATTACTCA  742

seq1  ACTCACAAAACCTCATATAGACCTAAATATTAACGAGTTCTAGAATGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAACCTCATATAGACCTAAATATTAACGAGTTCTAGAATGATA  792

seq1  TGTGACATTATTCATGGCCTTTCTCCTGGTCTAAGTAGAGTAAAAATAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTATTCATGGCCTTTCTCCTGGTCTAAGTAGAGTAAAAATAGA  842

seq1  CACATGTTTATTATAAAATCTTTTTGTGTTCACCTAGGGCAAAATCTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTATTATAAAATCTTTTTGTGTTCACCTAGGGCAAAATCTACT  892

seq1  AAATTTAGGTACAGATATTCTTGATATTAATAGGATCTGGGAGTTAGTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGTACAGATATTCTTGATATTAATAGGATCTGGGAGTTAGTTA  942

seq1  TGGAAAATTACTAATGTTTTGGTGCTGTCAGAATTCAAATATCTTTTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTACTAATGTTTTGGTGCTGTCAGAATTCAAATATCTTTTGAA  992

seq1  AATAAAAGATAATGAAAAATTCTTAGTTCATTTTTGCATTTGATAAAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGATAATGAAAAATTCTTAGTTCATTTTTGCATTTGATAAAATT  1042

seq1  TGTTCAGCAGACCTATTCCTTAATGACCTCTAAGTCCAAGGTTTTAATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCAGACCTATTCCTTAATGACCTCTAAGTCCAAGGTTTTAATGT  1092

seq1  AAGATTGAAACAAAAGATGTGCTCAGTAAATATATATCATATAATGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAAACAAAAGATGTGCTCAGTAAATATATATCATATAATGAATT  1142

seq1  C  1147
      |
seq2  C  1143


seq1: chr2_42368833_42369908
seq2: B6Ng01-295G16.g_66_1146

seq1  GAATTCAATATTTTAACAACAAGGTACCTTGATGTTGTTATTTAAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTTTAACAACAAGGTACCTTGATGTTGTTATTTAAAGAAC  50

seq1  TACCCAAATTGTGCACATGTCTTGGAATTTATAGAAGGCAGAACCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAATTGTGCACATGTCTTGGAATTTATAGAAGGCAGAACCCAGAG  100

seq1  CACAGCAGAAAATATGTGAGAGCTAGAAAGCGAGCAGGATAGGACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAAAATATGTGAGAGCTAGAAAGCGAGCAGGATAGGACAAAAA  150

seq1  GGGGACTATTTGTGGAAATCAAATTAGTAAAAATATCTGCTGTGATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTATTTGTGGAAATCAAATTAGTAAAAATATCTGCTGTGATTCCA  200

seq1  TATAAAATCTTTCAAAAACATGATAAAATTTGGTAGAGAGTTGTGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCTTTCAAAAACATGATAAAATTTGGTAGAGAGTTGTGGATTT  250

seq1  TAGAGAAGTACACTTCTGATATTACTTTAATCAACTATTTAGTTTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGTACACTTCTGATATTACTTTAATCAACTATTTAGTTTTCCTC  300

seq1  TGAAATATCATAAAGTAACACAGTAAAATTTAACTGAAAGGAAGTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCATAAAGTAACACAGTAAAATTTAACTGAAAGGAAGTATTTC  350

seq1  TACAAATATTTTATAACAAGGTATGTGATTATTAAGGAACTATTTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTTTATAACAAGGTATGTGATTATTAAGGAACTATTTCTTCT  400

seq1  CTATGAAGGGTAAATATAGATTCAATAAGTAAAAAATGTTAGACACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGGGTAAATATAGATTCAATAAGTAAAAAATGTTAGACACAATT  450

seq1  TTGTTACTGAGTCATAGTTACTTATTTAATTTTATTGGTCATTTTTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTGAGTCATAGTTACTTATTTAATTTTATTGGTCATTTTTACAG  500

seq1  AAATAAATTAACTTTAAGGATGAAGGCATATAAATGAAAAACAATTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTAACTTTAAGGATGAAGGCATATAAATGAAAAACAATTCATT  550

seq1  TTTCATATTTTTATCTTTATTAAACATTTTCTTTTTAACTATGTAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTTTATCTTTATTAAACATTTTCTTTTTAACTATGTAATAAG  600

seq1  AAGTTAAGCTATGAAATTCATTCCCATTAAATTAAAGCAAACATTACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGCTATGAAATTCATTCCCATTAAATTAAAGCAAACATTACTTC  650

seq1  AAATAAAGAATTAGTTCCCAGATTATCTTTAAAATTCACATTAAAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAATTAGTTCCCAGATTATCTTTAAAATTCACATTAAAATCAG  700

seq1  TGTTTTTCTTTGTTCACAATCACTTTTTTCCCCAAATATGACACTGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTGTTCACAATCACTTTTTTCCCCAAATATGACACTGACTC  750

seq1  AATATTCATTCCATCATAACATTAAGTTGCTATTTGTTTGAGGTTACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATTCCATCATAACATTAAGTTGCTATTTGTTTGAGGTTACTAT  800

seq1  GTAAACTTTCACTAATTGAGTAATTAAAATAGTATTATATATATATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTCACTAATTGAGTAATTAAAATAGTATTATATATATATATAT  850

seq1  ATTGCTTCTGTAGAATTTTATAGCAAAGTTGTAGAAATTATCCCAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTGTAGAATTTTATAGCAAAGTTGTAGAAATTATCCCAAATTA  900

seq1  AAAAACTGATATGTTGAGGATGTGGAGAAAGAGGAACACTCC-TCCATTG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAACTGATATGTTGAGGATGTGGAGAAAGAGGAACACTCCTTCCATTG  950

seq1  TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAATCTGGCGGT  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGTGGGATTGCAAGCTTGTACAACCACTCTGG-AATCAATCTGGCGGT  999

seq1  ACCTAAGAAAATTGG-ACATAGTACTACCAGAGGATCCAG-AAATACC-T  1046
      ||||||||||||||| |||||||||||||||||||||||| ||||||| |
seq2  ACCTAAGAAAATTGGAACATAGTACTACCAGAGGATCCAGAAAATACCTT  1049

seq1  CTTCTGGGCAT-ATA-CCCAGAATATGTTTCA  1076
      |||   ||||| ||| |||||| |||||||||
seq2  CTTTCTGGCATAATACCCCAGATTATGTTTCA  1081


| Home | SequenceCutter | Blast | Download |