BAC Information

Click to search

BAC

Clone NameB6Ng01-295L11
Chromosome2 (Build37)
Map Location 32,636,917 - 32,770,619
singlet/doubletdoublet
Overlap gene1700019L03Rik, Stxbp1, 9130404D14Rik
Upstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1
Downstream geneLrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L11.bB6Ng01-295L11.g
ACCGA091512GA091513
length1,126916
definitionB6Ng01-295L11.b B6Ng01-295L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,769,324 - 32,770,619)(32,636,917 - 32,637,831)
sequence
gaattccaggcccagtctcaacaggggaggaagcagagaactttctcaca
gtcctgggttggagggaagggccatgcctggaactggccttgtcagttcc
tgcagggggtaaagagagctggcctgggggtgggactttctgtcacagtc
ttttatgtgtccactccagcccaggacacacagaaccttccagcttgctg
tgtgccagactggaggctcacagctctgagccagctcatcccccccccac
acacaccaatattcccagtccctactgtaatatcccacggggaactgaac
agtgtccccttcctactcagtcctgtcctcacccttcccctacctgacct
agggtcccctactcggtcacagcaggtaagccagcagccctgggaacttt
cagaggactcatgggccagcaaggaaggagggtgtcccaggccaggcagc
cagagcctgagccagagccacagccccagggacctgggaacaggagctct
ttgtgggcagcagggcagggcccagcccaggtggcagggcttggcctggc
tgaagagccggttgcctcccagtggacagatgccagagggtggaggcctc
tgtagagaggtggggtgaactgggttcagtcaggtgcccacgctcccctc
actacgaggtagagctgtgcctgagagcaaggtaaagccgctctgggcct
ccctctgcctctgggaccacatcagcaggacagggcagaaaggccttcac
tactacctcacactgggggacaagcctaaacgtttataattcctcagaac
tctagaaaggcccttccagacctggcctgatggctcccctccagcctcac
ttcgtctctctctgtctgtctctgttgtgttctctctctctctctctctc
tctctctctctcacacacacacacacacacacacacacacagtattgtct
ctgttcccagcccacccttttattgggggccacagcctctttcgggagca
cttgcccaacccttgcttattccatcacttcacaggtggagcctaaccca
tcacttcctccttccattcaggcagcacccttccccaaccattcccccag
ttgccagcacaaagtaacaccatcct
gaattcatggcgcacctgggccagttgggcctcgaacgcgtccttctcca
tatccttggccacctccaggctctgcagctggtcattaaggtctgtgatc
tcatccaccttctggttcagcgtgcgcttgaggaaggccacaatctcctt
cttgttgttggccagctgctcgaactcctgatggaacagcttctcccgca
cagccagttcatcccatttccgctgatacctggggtgggtcagggcagag
acgcagggtcaagccagggcctgctctcccagacccttcttccataaggg
gccacctgaagtttcccatagtctgcaccccccattgtgcttcacgcctg
gaggcctgtgctcagcattcagactgtctttctgttttaaaggtgtgtgt
gtaagtaaatctaaggtgtaacagtttggctaggctgggtagctggtgag
cggcagagagccccacccccatcaaggtcagggtgaaggacacctgagta
tgtgagcacactgtagctgtctgcagacacaccagaagagggcactggat
tccattacagatggtcgtgagccaccatgaactcagggcctctagaagaa
gctgggcgtggtggtacacgcctttgatcccagcaatcaggaagcagagg
taggcagatctctgagttcgaggccagcctggtccacagagtgagttcca
ggacagccagggctacacagagaaacctccttctcgaaaacataacaaca
aacaaaaaaacaacataaaagggacctctagaagagcagtcagtgctctt
aacttgctgagccatttctccaggcatcgtttgtaaatttttaagagggc
cttcatttaactggtttcaaacaagattactgaaagcatttgggagattg
ccttatttgtaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32769324_32770619
seq2: B6Ng01-295L11.b_47_1172 (reverse)

seq1  AGGATGGTGTTCTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAAACTCAGAAATCCACGGGCCTCTGCCTTCCGAGTGCTGGGACTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCGTGCGCCACCACGCCCTGCTCAGGATGGTGTT-CTTTGTGCTGGGC  199
                               ||||||||||| |||||||||||  
seq2  -------------------------AGGATGGTGTTACTTTGTGCTGGCA  25

seq1  ACTGGGGGATGTGTTGGGGGA-GGTGCTGCCCTGAATGGAGGGAGGAGGT  248
      |||||||||   ||||||| | ||||||| |||||||||| |||||| ||
seq2  ACTGGGGGAATGGTTGGGGAAGGGTGCTG-CCTGAATGGAAGGAGGAAGT  74

seq1  GATGGGGTAGGCTCCACCTGTGGAGGTGATGG-ATAGGCAA-GGTTGGGC  296
      |||||| |||||||||||||| || ||||||| ||| |||| ||||||||
seq2  GATGGGTTAGGCTCCACCTGT-GAAGTGATGGAATAAGCAAGGGTTGGGC  123

seq1  AAGTGCTCCCCGAAAGAGGCTGTGGCCCCCA--TAAAGGGT-GGCTGGGA  343
      ||||||| |||||||||||||||||||||||   ||||||| ||||||||
seq2  AAGTGCT-CCCGAAAGAGGCTGTGGCCCCCAATAAAAGGGTGGGCTGGGA  172

seq1  ACAGAGACAATACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACAATACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGA  222

seq1  GAGAGAGAGAGAGAGAGAGAGAGAACACAACAGAGACAGACAGAGAGAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAACACAACAGAGACAGACAGAGAGAGA  272

seq1  CGAAGTGAGGCTGGAGGGGAGCCATCAGGCCAGGTCTGGAAGGGCC-TTC  492
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CGAAGTGAGGCTGGAGGGGAGCCATCAGGCCAGGTCTGGAAGGGCCTTTC  322

seq1  TAGAGTTCTGAGGAATTATAAACGTTTAGGCTTGTCCCCCAGTGTGAGGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTGAGGAATTATAAACGTTTAGGCTTGTCCCCCAGTGTGAGGT  372

seq1  AGTAGTGAAGGCCTTTCTGCCCTGTCCTGCTGATGTGGTCCCAGAGGCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGAAGGCCTTTCTGCCCTGTCCTGCTGATGTGGTCCCAGAGGCAG  422

seq1  AGGGAGGCCCAGAGCGGCTTTACCTTGCTCTCAGGCACAGCTCTACCTCG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCCAGAGCGGCTTTACCTTGCTCTCAGGCACAGCTCTACCTCG  472

seq1  TAGTGAGGGGAGCGTGGGCACCTGACTGAACCCAGTTCACCCCACCTCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGGGAGCGTGGGCACCTGACTGAACCCAGTTCACCCCACCTCTC  522

seq1  TACAGAGGCCTCCACCCTCTGGCATCTGTCCACTGGGAGGCAACCGGCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGCCTCCACCCTCTGGCATCTGTCCACTGGGAGGCAACCGGCTC  572

seq1  TTCAGCCAGGCCAAGCCCTGCCACCTGGGCTGGGCCCTGCCCTGCTGCCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAGGCCAAGCCCTGCCACCTGGGCTGGGCCCTGCCCTGCTGCCC  622

seq1  ACAAAGAGCTCCTGTTCCCAGGTCCCTGGGGCTGTGGCTCTGGCTCAGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGCTCCTGTTCCCAGGTCCCTGGGGCTGTGGCTCTGGCTCAGGC  672

seq1  TCTGGCTGCCTGGCCTGGGACACCCTCCTTCCTTGCTGGCCCATGAGTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGCCTGGCCTGGGACACCCTCCTTCCTTGCTGGCCCATGAGTCC  722

seq1  TCTGAAAGTTCCCAGGGCTGCTGGCTTACCTGCTGTGACCGAGTAGGGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTTCCCAGGGCTGCTGGCTTACCTGCTGTGACCGAGTAGGGGA  772

seq1  CCCTAGGTCAGGTAGGGGAAGGGTGAGGACAGGACTGAGTAGGAAGGGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGTCAGGTAGGGGAAGGGTGAGGACAGGACTGAGTAGGAAGGGGA  822

seq1  CACTGTTCAGTTCCCCGTGGGATATTACAGTAGGGACTGGGAATATTGGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCAGTTCCCCGTGGGATATTACAGTAGGGACTGGGAATATTGGT  872

seq1  GTGTGTGGGGGGGGGATGAGCTGGCTCAGAGCTGTGAGCCTCCAGTCTGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGGGGGGGATGAGCTGGCTCAGAGCTGTGAGCCTCCAGTCTGG  922

seq1  CACACAGCAAGCTGGAAGGTTCTGTGTGTCCTGGGCTGGAGTGGACACAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAAGCTGGAAGGTTCTGTGTGTCCTGGGCTGGAGTGGACACAT  972

seq1  AAAAGACTGTGACAGAAAGTCCCACCCCCAGGCCAGCTCTCTTTACCCCC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGTGACAGAAAGTCCCACCCCCAGGCCAGCTCTCTTTACCCCC  1022

seq1  TGCAGGAACTGACAAGGCCAGTTCCAGGCATGGCCCTTCCCTCCAACCCA  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAACTGACAAGGCCAGTTCCAGGCATGGCCCTTCCCTCCAACCCA  1072

seq1  GGACTGTGAGAAAGTTCTCTGCTTCCTCCCCTGTTGAGACTGGGCCTGGA  1292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGAGAAAGTTCTCTGCTTCCTCCCCTGTTGAGACTGGGCCTGGA  1122

seq1  ATTC  1296
      ||||
seq2  ATTC  1126

seq1: chr2_32636917_32637831
seq2: B6Ng01-295L11.g_67_982

seq1  GAATTCATGGCGCACCTGGGCCAGTTGGGCCTCGAACGCGTCCTTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCGCACCTGGGCCAGTTGGGCCTCGAACGCGTCCTTCTCCA  50

seq1  TATCCTTGGCCACCTCCAGGCTCTGCAGCTGGTCATTAAGGTCTGTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGGCCACCTCCAGGCTCTGCAGCTGGTCATTAAGGTCTGTGATC  100

seq1  TCATCCACCTTCTGGTTCAGCGTGCGCTTGAGGAAGGCCACAATCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACCTTCTGGTTCAGCGTGCGCTTGAGGAAGGCCACAATCTCCTT  150

seq1  CTTGTTGTTGGCCAGCTGCTCGAACTCCTGATGGAACAGCTTCTCCCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTGGCCAGCTGCTCGAACTCCTGATGGAACAGCTTCTCCCGCA  200

seq1  CAGCCAGTTCATCCCATTTCCGCTGATACCTGGGGTGGGTCAGGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTTCATCCCATTTCCGCTGATACCTGGGGTGGGTCAGGGCAGAG  250

seq1  ACGCAGGGTCAAGCCAGGGCCTGCTCTCCCAGACCCTTCTTCCATAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGGTCAAGCCAGGGCCTGCTCTCCCAGACCCTTCTTCCATAAGGG  300

seq1  GCCACCTGAAGTTTCCCATAGTCTGCACCCCCCATTGTGCTTCACGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGAAGTTTCCCATAGTCTGCACCCCCCATTGTGCTTCACGCCTG  350

seq1  GAGGCCTGTGCTCAGCATTCAGACTGTCTTTCTGTTTTAAAGGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGTGCTCAGCATTCAGACTGTCTTTCTGTTTTAAAGGTGTGTGT  400

seq1  GTAAGTAAATCTAAGGTGTAACAGTTTGGCTAGGCTGGGTAGCTGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAATCTAAGGTGTAACAGTTTGGCTAGGCTGGGTAGCTGGTGAG  450

seq1  CGGCAGAGAGCCCCACCCCCATCAAGGTCAGGGTGAAGGACACCTGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAGAGCCCCACCCCCATCAAGGTCAGGGTGAAGGACACCTGAGTA  500

seq1  TGTGAGCACACTGTAGCTGTCTGCAGACACACCAGAAGAGGGCACTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCACACTGTAGCTGTCTGCAGACACACCAGAAGAGGGCACTGGAT  550

seq1  TCCATTACAGATGGTCGTGAGCCACCATGAACTCAGGGCCTCTAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTACAGATGGTCGTGAGCCACCATGAACTCAGGGCCTCTAGAAGAA  600

seq1  GCTGGGCGTGGTGGTACACGCCTTTGATCCCAGCAATCAGGAAGCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCGTGGTGGTACACGCCTTTGATCCCAGCAATCAGGAAGCAGAGG  650

seq1  TAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCCACAGAGTGAGTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGTCCACAGAGTGAGTTCCA  700

seq1  GGACAGCCAGGGCTACACAGAGAAACCTCCTTCTCGAAAAACAAAACAAA  750
      |||||||||||||||||||||||||||||||||||| |||||| ||| ||
seq2  GGACAGCCAGGGCTACACAGAGAAACCTCCTTCTCG-AAAACATAAC-AA  748

seq1  CAAACAAAAAAACAACAAAAAAAAGGACCTCTAGAAGAGCAGTCAGTGCT  800
      |||||||||||||||| | |||| ||||||||||||||||||||||||||
seq2  CAAACAAAAAAACAAC-ATAAAAGGGACCTCTAGAAGAGCAGTCAGTGCT  797

seq1  CTTAAC-TGCTGAGCCATTTCTCCAGGCATCGTTTGTAAA-TTTTAAGAG  848
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTAACTTGCTGAGCCATTTCTCCAGGCATCGTTTGTAAATTTTTAAGAG  847

seq1  GGCCTT-ATTT-ACTGGTTTCAAACAAGATTACTG-AAGCATTTGGAGAA  895
      |||||| |||| ||||||||||||||||||||||| ||||||||||   |
seq2  GGCCTTCATTTAACTGGTTTCAAACAAGATTACTGAAAGCATTTGGGAGA  897

seq1  TTGCTTTATTTGTAAGGATT  915
      |||| |||||||| ||||||
seq2  TTGCCTTATTTGT-AGGATT  916