BAC Information

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BAC

Clone NameB6Ng01-295P21
Chromosome2 (Build37)
Map Location 116,815,827 - 116,932,395
singlet/doubletdoublet
Overlap geneLOC241621
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464, Tmco5, LOC100043557
Downstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P21.bB6Ng01-295P21.g
ACCGA091718GA091719
length8091,168
definitionB6Ng01-295P21.b B6Ng01-295P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,815,827 - 116,816,635)(116,931,232 - 116,932,395)
sequence
gaattcttgattttcttgattgtcttgcatctctgtttcaagtgctgata
tctctggcctgttctagtacctatggcattcatctatccatatggcagag
ttatatccatgccaaggatcacacacacacacacaaacacacagtgtcac
ttgaggttaggctcattaacaggtgcctttctgtgacttccttttttcca
aaacaagaagtattgagtcagccatttagccagagggaaatccctgggct
atgactatgaataacagaagcttaccagtgttggtaaaatccatttcccc
tttagaggcctgagaccaaaagtcagtgtcactctcagaagcccaagaga
cttaggaaagacttccagaaattctatggtcgttaatatttcaaactcaa
attctgagatgtttcagagttctttcctggacagaggcagcttcaatttc
ataataaaaaatagccaaaggggatctgggatgataacttgatgactaaa
gtacttactaagaaagtataaggatctgagttcaaatccccagaacccaa
gtaaaaacaggatgtgtgaggccagggtgagcttcaaaatgagactctag
agaaacaaacaaataaacaaacccaattaaaaataaagtcatgataataa
catgatagtgagagtcagaaagactggatatctgctcccaattctattct
caaagtggttataagggtccaatagtaatcttaccacagtgctttgaaca
gaataaatacttaacacacttatatttcttagggttgtgtgtgtgtgtgt
gtgtgtgtg

gaattcagaccctctgctgtatacctaaatgtgcaggcagtaaacatggg
tttgcgtatgccacaatgacaccatgcctcatgcatgctttatagcagtg
tttattctttgaaacagtcacatggtagtttgttgtttgggtatacagga
cattacctgcatctgtttattgatctgtttctacatcaatctttgcttat
tactgtgttcatcttttcctgtcagaaatagcgctttggtgaacaccctg
taaacttatctttaagtatatttatacttaaaagtaaagatttctctcag
gaaactttacattagtggcattcttaagttaaaaggaagaatttgttcat
ttgtttgctgacttactgtatttttgtgacagggtcttgccttctctgta
gcccatggctttgaactccagagtctatctgcctcagcctcctgaatgta
aaatactacagctgacttgagaataaacattttaaagatcctccctctaa
agtatgtctttttttaaacaattattttctcactagtaacaaatgacagt
accattttctttatattcacccacataaggaaggataatgatatttctta
atttttattaattgtaacgccctacccaaatactctattgctggttttgt
ttttgtacttccctaattaccagctttaatgtcgttcatgtttcttcttc
agagagctctattatttaccctcttcttatgtatttctttgcctcagttt
cctgagctgtatccttagcttataataaactaaccccagtacatttgttg
taatgttgtcccagcacagagcagtttagtcagctcctaaaagcttgtac
ccacttcttctttcctgaagcagtaatgaacaataattctccagagagat
gcaggtgggcgttgctggactctgaaagtgtgccacataatctatgctgg
tgaaaggagaccctgtaataccaatgctgttggccgcctcgcctcctgcc
agtctcattgcttcatctctgtcatgtcatcccacccacaagagagaaga
actcttgctattcgccctcatttcaggtgggaaggaaacgaagcgaattg
gagctaaaataagctcgagaagtttcacaaagaaagtccgcaagctcctg
cttccaaagatccaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_116815827_116816635
seq2: B6Ng01-295P21.b_47_855

seq1  GAATTCTTGATTTTCTTGATTGTCTTGCATCTCTGTTTCAAGTGCTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTTTCTTGATTGTCTTGCATCTCTGTTTCAAGTGCTGATA  50

seq1  TCTCTGGCCTGTTCTAGTACCTATGGCATTCATCTATCCATATGGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCTGTTCTAGTACCTATGGCATTCATCTATCCATATGGCAGAG  100

seq1  TTATATCCATGCCAAGGATCACACACACACACACAAACACACAGTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCATGCCAAGGATCACACACACACACACAAACACACAGTGTCAC  150

seq1  TTGAGGTTAGGCTCATTAACAGGTGCCTTTCTGTGACTTCCTTTTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTAGGCTCATTAACAGGTGCCTTTCTGTGACTTCCTTTTTTCCA  200

seq1  AAACAAGAAGTATTGAGTCAGCCATTTAGCCAGAGGGAAATCCCTGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGTATTGAGTCAGCCATTTAGCCAGAGGGAAATCCCTGGGCT  250

seq1  ATGACTATGAATAACAGAAGCTTACCAGTGTTGGTAAAATCCATTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATGAATAACAGAAGCTTACCAGTGTTGGTAAAATCCATTTCCCC  300

seq1  TTTAGAGGCCTGAGACCAAAAGTCAGTGTCACTCTCAGAAGCCCAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGCCTGAGACCAAAAGTCAGTGTCACTCTCAGAAGCCCAAGAGA  350

seq1  CTTAGGAAAGACTTCCAGAAATTCTATGGTCGTTAATATTTCAAACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAAGACTTCCAGAAATTCTATGGTCGTTAATATTTCAAACTCAA  400

seq1  ATTCTGAGATGTTTCAGAGTTCTTTCCTGGACAGAGGCAGCTTCAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGATGTTTCAGAGTTCTTTCCTGGACAGAGGCAGCTTCAATTTC  450

seq1  ATAATAAAAAATAGCCAAAGGGGATCTGGGATGATAACTTGATGACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAAATAGCCAAAGGGGATCTGGGATGATAACTTGATGACTAAA  500

seq1  GTACTTACTAAGAAAGTATAAGGATCTGAGTTCAAATCCCCAGAACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTACTAAGAAAGTATAAGGATCTGAGTTCAAATCCCCAGAACCCAA  550

seq1  GTAAAAACAGGATGTGTGAGGCCAGGGTGAGCTTCAAAATGAGACTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACAGGATGTGTGAGGCCAGGGTGAGCTTCAAAATGAGACTCTAG  600

seq1  AGAAACAAACAAATAAACAAACCCAATTAAAAATAAAGTCATGATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAACAAATAAACAAACCCAATTAAAAATAAAGTCATGATAATAA  650

seq1  CATGATAGTGAGAGTCAGAAAGACTGGATATCTGCTCCCAATTCTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGTGAGAGTCAGAAAGACTGGATATCTGCTCCCAATTCTATTCT  700

seq1  CAAAGTGGTTATAAGGGTCCAATAGTAATCTTACCACAGTGCTTTGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGTTATAAGGGTCCAATAGTAATCTTACCACAGTGCTTTGAACA  750

seq1  GAATAAATACTTAACACACTTATATTTCTTAGGGTTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATACTTAACACACTTATATTTCTTAGGGTTGTGTGTGTGTGTGT  800

seq1  GTGTGTGTG  809
      |||||||||
seq2  GTGTGTGTG  809


seq1: chr2_116931232_116932395
seq2: B6Ng01-295P21.g_68_1235 (reverse)

seq1  GGCCTG--ACTTT-GAAGCA-GAGCTTTGCGACTTTC-TTGTGAAACCTC  45
      ||||||   |||| |||||| ||||||   ||||||| |||||||| || 
seq2  GGCCTGGATCTTTGGAAGCAGGAGCTTGCGGACTTTCTTTGTGAAA-CTT  49

seq1  CTCGAGCTTATTTAACCTCCATCTGCTTTCGTTTCCTTCCCA-CTGAAAT  94
      ||||||||||||| | |||||  |   ||||||||||||||| |||||||
seq2  CTCGAGCTTATTTTAGCTCCAATTCGCTTCGTTTCCTTCCCACCTGAAAT  99

seq1  GAGGGCG-ATACCAAGAGT--CTCTCTC-TGT-GGTGGGATGAACATGAA  139
      ||||||| ||| |||||||   |||||| ||| ||||||||| ||||| |
seq2  GAGGGCGAATAGCAAGAGTTCTTCTCTCTTGTGGGTGGGATG-ACATG-A  147

seq1  CAGAGATGAAGCAAATGAGACTGGGCAGGAGGCGA-GCGGCCAACAGCAT  188
      |||||||||||| ||||||||| |||||||||||| ||||||||||||||
seq2  CAGAGATGAAGC-AATGAGACT-GGCAGGAGGCGAGGCGGCCAACAGCAT  195

seq1  TGGGTATTACAGGGTCTTCCTTTCCACCAGCATAGATTATGTGGCACACT  238
      | |||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  T-GGTATTACAGGGTC-TCCTTT-CACCAGCATAGATTATGTGGCACACT  242

seq1  TTCAGAGTCCAGCAACGCCCACCTGCATCTCTCTGGAGAATTATTGTTCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCCAGCAACGCCCACCTGCATCTCTCTGGAGAATTATTGTTCA  292

seq1  TTACTGCTTCAGGAAAGAAGAAGTGGGTACAAGCTTTTAGGAGCTGACTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTCAGGAAAGAAGAAGTGGGTACAAGCTTTTAGGAGCTGACTA  342

seq1  AACTGCTCTGTGCTGGGACAACATTACAACAAATGTACTGGGGTTAGTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTGTGCTGGGACAACATTACAACAAATGTACTGGGGTTAGTTT  392

seq1  ATTATAAGCTAAGGATACAGCTCAGGAAACTGAGGCAAAGAAATACATAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGCTAAGGATACAGCTCAGGAAACTGAGGCAAAGAAATACATAA  442

seq1  GAAGAGGGTAAATAATAGAGCTCTCTGAAGAAGAAACATGAACGACATTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTAAATAATAGAGCTCTCTGAAGAAGAAACATGAACGACATTA  492

seq1  AAGCTGGTAATTAGGGAAGTACAAAAACAAAACCAGCAATAGAGTATTTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTAATTAGGGAAGTACAAAAACAAAACCAGCAATAGAGTATTTG  542

seq1  GGTAGGGCGTTACAATTAATAAAAATTAAGAAATATCATTATCCTTCCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCGTTACAATTAATAAAAATTAAGAAATATCATTATCCTTCCTT  592

seq1  ATGTGGGTGAATATAAAGAAAATGGTACTGTCATTTGTTACTAGTGAGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTGAATATAAAGAAAATGGTACTGTCATTTGTTACTAGTGAGAA  642

seq1  AATAATTGTTTAAAAAAAGACATACTTTAGAGGGAGGATCTTTAAAATGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTTTAAAAAAAGACATACTTTAGAGGGAGGATCTTTAAAATGT  692

seq1  TTATTCTCAAGTCAGCTGTAGTATTTTACATTCAGGAGGCTGAGGCAGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCAAGTCAGCTGTAGTATTTTACATTCAGGAGGCTGAGGCAGAT  742

seq1  AGACTCTGGAGTTCAAAGCCATGGGCTACAGAGAAGGCAAGACCCTGTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGGAGTTCAAAGCCATGGGCTACAGAGAAGGCAAGACCCTGTCA  792

seq1  CAAAAATACAGTAAGTCAGCAAACAAATGAACAAATTCTTCCTTTTAACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACAGTAAGTCAGCAAACAAATGAACAAATTCTTCCTTTTAACT  842

seq1  TAAGAATGCCACTAATGTAAAGTTTCCTGAGAGAAATCTTTACTTTTAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCCACTAATGTAAAGTTTCCTGAGAGAAATCTTTACTTTTAAG  892

seq1  TATAAATATACTTAAAGATAAGTTTACAGGGTGTTCACCAAAGCGCTATT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATACTTAAAGATAAGTTTACAGGGTGTTCACCAAAGCGCTATT  942

seq1  TCTGACAGGAAAAGATGAACACAGTAATAAGCAAAGATTGATGTAGAAAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGAAAAGATGAACACAGTAATAAGCAAAGATTGATGTAGAAAC  992

seq1  AGATCAATAAACAGATGCAGGTAATGTCCTGTATACCCAAACAACAAACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATAAACAGATGCAGGTAATGTCCTGTATACCCAAACAACAAACT  1042

seq1  ACCATGTGACTGTTTCAAAGAATAAACACTGCTATAAAGCATGCATGAGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGACTGTTTCAAAGAATAAACACTGCTATAAAGCATGCATGAGG  1092

seq1  CATGGTGTCATTGTGGCATACGCAAACCCATGTTTACTGCCTGCACATTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCATTGTGGCATACGCAAACCCATGTTTACTGCCTGCACATTT  1142

seq1  AGGTATACAGCAGAGGGTCTGAATTC  1164
      ||||||||||||||||||||||||||
seq2  AGGTATACAGCAGAGGGTCTGAATTC  1168


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