BAC Information

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BAC

Clone NameB6Ng01-296M17
Chromosome2 (Build37)
Map Location 145,921,171 - 146,079,047
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296M17.bB6Ng01-296M17.g
ACCGA092313GA092314
length1,1971,122
definitionB6Ng01-296M17.b B6Ng01-296M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,077,863 - 146,079,047)(145,921,171 - 145,922,293)
sequence
gaattcttggcatataagaaagttcacagcattatggaagagaaagaata
accaaaagcctgtttgtttgtttttttcaccacttaaagaatatagaatg
ataaaatcccagatgaacttcacctacctgtgttcccccaacctgctgga
ggccacaatgaggtattgaagatctggccagcttagaatcctggtggtac
ccacacctctcctgcagctcaatcagaccacaggacagcagcttcattcc
tcacatctcacaaacctacagggcagggttttagacggtcactccaccct
cagaagagtatcctaggacttaataggagaggcatagaagtgggcgaagc
agaaaggtgccctgccttccttgaggctacctcccaggcaggagagaagg
aatcagccatcaggagctccttggtgctaagcaagaaaagacaatggggg
atgagtctgagtgacccgaggaacaggaagtggttctttgagtgagtcct
gtctcactcaaaaagcctcatgtggtggtacaagcctgcaggcccagctc
catgagagactgaaatgagaggattccttgagcccttggcacttaggtct
ttctgtcccagacaagactccttctcgacccattcagggtccctgccttt
gggtacccattgtgttggaacaaatccacaggagtgagcagacatgtgac
caaggggaatccttttattgtcccctcaaaggcagaaaggactaatttgt
tgggtttatggcctgggcaacttttggtaccagtagcaaatgctctcctc
ctttgacccacacacctgagaaatgtaactaatgtgaattgagttattgt
ctgctcccaacttcagcagagtgcatggcaggagctccagtagacaatgc
cttgatcccaggcccacactgcctcctgactgtctaaagacagcacgacc
gtcctgttgctcgtgtgtctgggttcatacacctttgcataagtagccca
ttatagactatatccccagtcccaccccagctccagggggcctgcttcta
tcataaaaaactgctaccgaagtttccatcacctgcctctgatgttttcc
cttggatccctcctgaaccaatataaggaatgccacagttgcctattcca
gaatgtcccacacacacttactgctactttttaagccgttgtttgtc
gaattctctgcagtcagccacttccacgccactgtcttttctgctgtgaa
ggctccatttgaagatctgtgtggaaagaggtcctaccaccaaaggaaag
gccaagagtcggatggcagatgaactgaatcgcagtaaatttttgttcag
tcatttttttaacttttttttctttttatttctcttcagctctcacctga
aatttaataatctcaccctgatttcaactcatggactcccaggaaaaaga
cttttgcacaacgaacagaggaagtttctagcaagcgagtatgattcctt
ttccttcctaattgacttcctagtttgtgtgcagtctttttttatttttc
ttccttttttaatgttgaataatagatctttgaagtggaaaggggaaagt
gggggactttccccctagagtccaggaattacctgggaaatacaagttca
aacccatcaatgatcatattagggtttctactgctgtgacaaaatagtct
ggcaaaggctcacacttccccaccaccgttcatcactgaaggaagtcagg
acaggaactcacacagggcaggaacctgcaggagctggcacaggagtgct
gcttactggcttgcttatagaaccctggaccaccatcccagggttggaac
ctcccatcatgggctatcaatcttctctatcaatcactaataaaaaacgc
cttacaggggctggtgagatggctcagtggataagagcacccgactgctc
ttccgaaggtccagagttcaaatcccagcaaccacatggtggctcacaac
catctgtaacaagatctgacgctcctctttctggagtgtctgaagacagc
tacagtgtacttacatataataaataaataaatcttttaaaaaaaaaaac
accttacagctagatcttatggagggggaggcatttttctcagctgagac
tctctcctttcagatgactccagcttgtgtcaacattgacaccagactag
ctatggcatgagtgatgagcatgccagatggggctgcaattgcatctaag
ggagaaagctccctgtctaaagtgaatggagctcacttgacagcctgcct
tctaccattggttatgagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146077863_146079047
seq2: B6Ng01-296M17.b_49_1245 (reverse)

seq1  GACAAACAACAGCTTTTAAAAAAAGTAGCAGTTAG-GTGTGT-GGACATT  48
      |||||||||| ||||    ||||||||||||| || |||||| ||||| |
seq2  GACAAACAACGGCTT----AAAAAGTAGCAGTAAGTGTGTGTGGGACA-T  45

seq1  TCTGGGATAG--CACTGT-GCA-TCCTAATAT--GTTCA-GAAGGATCCA  91
      ||||| ||||   ||||| ||| |||| ||||  ||||| || |||||||
seq2  TCTGGAATAGGCAACTGTGGCATTCCTTATATTGGTTCAGGAGGGATCCA  95

seq1  AGG--AAACATCAGA-GCA-GTGATGGAA--CTCCGTAGCAGTTTTAT-T  134
      |||  |||||||||| ||| |||||||||   || ||||||||||| | |
seq2  AGGGAAAACATCAGAGGCAGGTGATGGAAACTTCGGTAGCAGTTTTTTAT  145

seq1  GATAGAAGCAGCCCCCTTGGAGCTGGGGTGGGACTGGGGATATAGTCTAT  184
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  GATAGAAGCAGGCCCCCTGGAGCTGGGGTGGGACTGGGGATATAGTCTAT  195

seq1  AATGGGCTACTTATGCAAA-GTGTATGAA-CCAGACACACGAGCAAACAG  232
      ||||||||||||||||||| ||||||||| |||||||||||||| |||||
seq2  AATGGGCTACTTATGCAAAGGTGTATGAACCCAGACACACGAGC-AACAG  244

seq1  GACGGTCGTGCTGTCTTTAGACAGTCAGGAGGCAGTGTGGGCCTGGGATC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCGTGCTGTCTTTAGACAGTCAGGAGGCAGTGTGGGCCTGGGATC  294

seq1  AAGGCATTGTCTACTGGAGCTCCTGCCATGCACTCTGCTGAAGTTGGGAG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTGTCTACTGGAGCTCCTGCCATGCACTCTGCTGAAGTTGGGAG  344

seq1  CAGACAATAACTCAATTCACATTAGTTACATTTCTCAGGTGTGTGGGTCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATAACTCAATTCACATTAGTTACATTTCTCAGGTGTGTGGGTCA  394

seq1  AAGGAGGAGAGCATTTGCTACTGGTACCAAAAGTTGCCCAGGCCATAAAC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGAGCATTTGCTACTGGTACCAAAAGTTGCCCAGGCCATAAAC  444

seq1  CCAACAAATTAGTCCTTTCTGCCTTTGAGGGGACAATAAAAGGATTCCCC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATTAGTCCTTTCTGCCTTTGAGGGGACAATAAAAGGATTCCCC  494

seq1  TTGGTCACATGTCTGCTCACTCCTGTGGATTTGTTCCAACACAATGGGTA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACATGTCTGCTCACTCCTGTGGATTTGTTCCAACACAATGGGTA  544

seq1  CCCAAAGGCAGGGACCCTGAATGGGTCGAGAAGGAGTCTTGTCTGGGACA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGCAGGGACCCTGAATGGGTCGAGAAGGAGTCTTGTCTGGGACA  594

seq1  GAAAGACCTAAGTGCCAAGGGCTCAAGGAATCCTCTCATTTCAGTCTCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCTAAGTGCCAAGGGCTCAAGGAATCCTCTCATTTCAGTCTCTC  644

seq1  ATGGAGCTGGGCCTGCAGGCTTGTACCACCACATGAGGCTTTTTGAGTGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTGGGCCTGCAGGCTTGTACCACCACATGAGGCTTTTTGAGTGA  694

seq1  GACAGGACTCACTCAAAGAACCACTTCCTGTTCCTCGGGTCACTCAGACT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACTCACTCAAAGAACCACTTCCTGTTCCTCGGGTCACTCAGACT  744

seq1  CATCCCCCATTGTCTTTTCTTGCTTAGCACCAAGGAGCTCCTGATGGCTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCATTGTCTTTTCTTGCTTAGCACCAAGGAGCTCCTGATGGCTG  794

seq1  ATTCCTTCTCTCCTGCCTGGGAGGTAGCCTCAAGGAAGGCAGGGCACCTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTCTCCTGCCTGGGAGGTAGCCTCAAGGAAGGCAGGGCACCTT  844

seq1  TCTGCTTCGCCCACTTCTATGCCTCTCCTATTAAGTCCTAGGATACTCTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCGCCCACTTCTATGCCTCTCCTATTAAGTCCTAGGATACTCTT  894

seq1  CTGAGGGTGGAGTGACCGTCTAAAACCCTGCCCTGTAGGTTTGTGAGATG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGGAGTGACCGTCTAAAACCCTGCCCTGTAGGTTTGTGAGATG  944

seq1  TGAGGAATGAAGCTGCTGTCCTGTGGTCTGATTGAGCTGCAGGAGAGGTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGAAGCTGCTGTCCTGTGGTCTGATTGAGCTGCAGGAGAGGTG  994

seq1  TGGGTACCACCAGGATTCTAAGCTGGCCAGATCTTCAATACCTCATTGTG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCACCAGGATTCTAAGCTGGCCAGATCTTCAATACCTCATTGTG  1044

seq1  GCCTCCAGCAGGTTGGGGGAACACAGGTAGGTGAAGTTCATCTGGGATTT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCAGGTTGGGGGAACACAGGTAGGTGAAGTTCATCTGGGATTT  1094

seq1  TATCATTCTATATTCTTTAAGTGGTGAAAAAAACAAACAAACAGGCTTTT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCTATATTCTTTAAGTGGTGAAAAAAACAAACAAACAGGCTTTT  1144

seq1  GGTTATTCTTTCTCTTCCATAATGCTGTGAACTTTCTTATATGCCAAGAA  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCTTTCTCTTCCATAATGCTGTGAACTTTCTTATATGCCAAGAA  1194

seq1  TTC  1185
      |||
seq2  TTC  1197

seq1: chr2_145921171_145922293
seq2: B6Ng01-296M17.g_69_1190

seq1  GAATTCTCTGCAGTCAGCCACTTCCACGCCACTGTCTTTTCTGCTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAGTCAGCCACTTCCACGCCACTGTCTTTTCTGCTGTGAA  50

seq1  GGCTCCATTTGAAGATCTGTGTGGAAAGAGGTCCTACCACCAAAGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATTTGAAGATCTGTGTGGAAAGAGGTCCTACCACCAAAGGAAAG  100

seq1  GCCAAGAGTCGGATGGCAGATGAACTGAATCGCAGTAAATTTTTGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGTCGGATGGCAGATGAACTGAATCGCAGTAAATTTTTGTTCAG  150

seq1  TCATTTTTTTAACTTTTTTTTCTTTTTATTTCTCTTCAGCTCTCACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTAACTTTTTTTTCTTTTTATTTCTCTTCAGCTCTCACCTGA  200

seq1  AATTTAATAATCTCACCCTGATTTCAACTCATGGACTCCCAGGAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAATCTCACCCTGATTTCAACTCATGGACTCCCAGGAAAAAGA  250

seq1  CTTTTGCACAACGAACAGAGGAAGTTTCTAGCAAGCGAGTATGATTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCACAACGAACAGAGGAAGTTTCTAGCAAGCGAGTATGATTCCTT  300

seq1  TTCCTTCCTAATTGACTTCCTAGTTTGTGTGCAGTCTTTTTTTATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTAATTGACTTCCTAGTTTGTGTGCAGTCTTTTTTTATTTTTC  350

seq1  TTCCTTTTTTAATGTTGAATAATAGATCTTTGAAGTGGAAAGGGGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTAATGTTGAATAATAGATCTTTGAAGTGGAAAGGGGAAAGT  400

seq1  GGGGGACTTTCCCCCTAGAGTCCAGGAATTACCTGGGAAATACAAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTTTCCCCCTAGAGTCCAGGAATTACCTGGGAAATACAAGTTCA  450

seq1  AACCCATCAATGATCATATTAGGGTTTCTACTGCTGTGACAAAATAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCAATGATCATATTAGGGTTTCTACTGCTGTGACAAAATAGTCT  500

seq1  GGCAAAGGCTCACACTTCCCCACCACCGTTCATCACTGAAGGAAGTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGCTCACACTTCCCCACCACCGTTCATCACTGAAGGAAGTCAGG  550

seq1  ACAGGAACTCACACAGGGCAGGAACCTGCAGGAGCTGGCACAGGAGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTCACACAGGGCAGGAACCTGCAGGAGCTGGCACAGGAGTGCT  600

seq1  GCTTACTGGCTTGCTTATAGAACCCTGGACCACCATCCCAGGGTTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGGCTTGCTTATAGAACCCTGGACCACCATCCCAGGGTTGGAAC  650

seq1  CTCCCATCATGGGCTATCAATCTTCTCTATCAATCACTAATAAAAAACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCATGGGCTATCAATCTTCTCTATCAATCACTAATAAAAAACGC  700

seq1  CTTACAGGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCGACTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCGACTGCTC  750

seq1  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  800

seq1  CATCTGTAACAAGATCTGACGC-CCTC-TTCTGGAGTGTCTGAAGACAGC  848
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CATCTGTAACAAGATCTGACGCTCCTCTTTCTGGAGTGTCTGAAGACAGC  850

seq1  TACAGTGTACTTACATATAATAAATAAATAAATC-TTTAAAAAAAAAAAC  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACAGTGTACTTACATATAATAAATAAATAAATCTTTTAAAAAAAAAAAC  900

seq1  ACCTTACAGCTAGATCTTATGGA-GGGGAGGCA-TTTTCTCAGCTGAGAC  945
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ACCTTACAGCTAGATCTTATGGAGGGGGAGGCATTTTTCTCAGCTGAGAC  950

seq1  TCTCTCCTTTCAGATGACTCCAGCTTGTGTC-ACATTGACACAAGACTAG  994
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TCTCTCCTTTCAGATGACTCCAGCTTGTGTCAACATTGACACCAGACTAG  1000

seq1  CTATGGCAATGAGTGAATGAGCATGGCAGGATGGGGCTGGCATTTTGCAT  1044
      ||||||| ||||||| ||||||||| || ||||||||||  |  ||||||
seq2  CTATGGC-ATGAGTG-ATGAGCATGCCA-GATGGGGCTGCAA--TTGCAT  1045

seq1  CT-AGGGAGAAAGCTCCCCTGTTCCTACAGTTGAATGGAGCTCACTGGCC  1093
      || |||||||||||| ||||||  ||| || ||||||||||||||| | |
seq2  CTAAGGGAGAAAGCT-CCCTGT--CTAAAG-TGAATGGAGCTCACTTGAC  1091

seq1  CAGCTGCC-TCTACATTGGGTTATGAGAAAC  1123
         ||||| |||||  | |||||||||||||
seq2  AGCCTGCCTTCTACCATTGGTTATGAGAAAC  1122