BAC Information

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BAC

Clone NameB6Ng01-296N15
Chromosome2 (Build37)
Map Location 42,972,354 - 43,104,751
singlet/doubletdoublet
Overlap geneLOC100041228
Upstream geneLrp1b
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296N15.bB6Ng01-296N15.g
ACCGA092357GA092358
length1,1471,101
definitionB6Ng01-296N15.b B6Ng01-296N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,103,612 - 43,104,751)(42,972,354 - 42,973,455)
sequence
gaattcttttttatttttatggttttgtttaattgaacgtgcatggatgg
tgggagattgtaaaaagaagagcttatgttttctcctttgagatgacaca
tacaaattaatgcctcagttatccctggaccagaagatcatcatttcaaa
tctatgtaatttcaatgacatctgaactggtgaccagtcctactcttgca
ataaagttacgggtggaaggctaatatatcagaggaggctgctaagatgt
gaaaataatgtcactccctcactcaaatccattgcttctgcacgtggcag
aggtaagaagccaaatcttcacaattggcttaagattttctgcacaatct
gccttcattgcctttatttcagcatcatttggtacttcacagtgacacca
tctgttccagcatactggactccttgaaaacaagaggtatgatatatgtc
acttttctgacactagatggctaaaggatttttttcccagaattgcattt
actcttacaaatacatggcaggataatccatgaaagatactagttattaa
attttttatgtgggagcaagaatagtatgaactgaaatggacagagaaac
tgtgattgttcctaagaccatctttcctctaaaatgaatcctaatctctg
catgtctcaaagtacaaacttttttttagtccatcctctaggatacacac
tagacttccttccagtttaaagttatattcccacatccatgtcagaatta
aaccataaatttgagcttaaggaatgagggggagccattcatcaaactaa
ttaagctcctattatcattaagatagttttccagctattgtataataaag
atggtataatgacagtccttcccagttgtttatgaacaaaataaaatata
tcagagtatgataacattataatggcatactgcatatactagaatcattg
cctttactgcaaatctacaaatgtattcagaaaaaatcaaaatttggtta
ctatagatattactaaaaacatattaggtattgttctaagtagtggcaaa
tgttgtgcaatgtgttttcaaataaaaaatattaccctcaacaacatgga
gtaaggacccatattaacaatgctagagtctctgatggagatgacat

gaattccttgtggctcctaactagaacacagcattttctctgactattgt
actaaaattattttctatccttattttattctgccatttttttttaactg
gaacatggacagacctgtgcattttttcctaacatcatttcttttaaaat
tagtgcatttatcaaagaaaacaagaatgtgtgaagctaaataacatcat
ttctagtaaatcaagcaaaggtaaatttctgattacctttgaaacctgag
tattgctgtcttcaactatctctaattattcttgttggtacataaattca
taaatccctggaatccaaggcttgcctggggttttatttctgttgttgat
ttatttgtgactaattttcctcatgtttcttcatttcttcaagagccaga
cactcctttctgtctagtttttcattttttattctttcagaaagtattta
cacatgtaatcttggcctctgtactccagggaatttaattaacttttgtt
ttgattcgcaatttatttaattaggaaaagtcatttgatcttcatgaatc
gtaaattgcgaagtcaacacgtgtcagcctgtggtatttttgtttctttg
aattgacattatgtttactcagctcttcataacttataagattatgattt
ttattggtggaaaactgtggagagctgtaagtaattgccattacaagatg
gcgctggctcccgctgtgcctaactagtaaacaagcattgtgcgcaggtg
caagagtgaattcatgccaagtcactgcccatctcggggtgtaacaatga
ggtgatgggcgagcaatgaatccggtgctgacacgccacgctgagggcta
tataagcagcaccattttctgggttctgggtctttccctcctgaagaagc
aataaagcttttgctgcagaagaattccgggttgttccgagtgttgttct
tgcccggcgagaacaattagctcggacagaaaacctatgtagtttttcat
gttgccacactcatattaggtatttttcaaatttaatatgcataaaagtg
atacctaaccgtcattgcaagcattagtacgtgaacccacttaatattaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43103612_43104751
seq2: B6Ng01-296N15.b_47_1193 (reverse)

seq1  ATGTCAATCTCCATCAGAGACTCTAGCATTGT--ATATGGGTCCTTACTC  48
      ||||| ||||||||||||||||||||||||||  ||||||||||||||||
seq2  ATGTC-ATCTCCATCAGAGACTCTAGCATTGTTAATATGGGTCCTTACTC  49

seq1  CATTGTTGTTGAGG----TATATTTTATTTG-AAACACATTGCAC-ACAT  92
      || |||||||||||    ||| ||||||||| ||||||||||||| ||||
seq2  CA-TGTTGTTGAGGGTAATATTTTTTATTTGAAAACACATTGCACAACAT  98

seq1  TTGCCACTACTTAGA--CATACCTTAATTATGTTTTTAGTTATATCTATA  140
      |||||||||||||||   ||||||  | |||||||||||| |||||||||
seq2  TTGCCACTACTTAGAACAATACCT--AATATGTTTTTAGTAATATCTATA  146

seq1  GTAACC-AATTTTGATTTTTTTCTG-ATACATTTGTAGATTTGCAGTAAA  188
      |||||| |||||||| ||||||||| ||||||||||||||||||||||||
seq2  GTAACCAAATTTTGA-TTTTTTCTGAATACATTTGTAGATTTGCAGTAAA  195

seq1  GGCAATGATTCTAGTATATGCAGTATGCCATTATAATGTTATCATACTCT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGATTCTAGTATATGCAGTATGCCATTATAATGTTATCATACTCT  245

seq1  GATATATTTTATTTTGTTCATAAACAACTGGGAAGGACTGTCATTATACC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTATTTTGTTCATAAACAACTGGGAAGGACTGTCATTATACC  295

seq1  ATCTTTATTATACAATAGCTGGAAAACTATCTTAATGATAATAGGAGCTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTATACAATAGCTGGAAAACTATCTTAATGATAATAGGAGCTT  345

seq1  AATTAGTTTGATGAATGGCTCCCCCTCATTCCTTAAGCTCAAATTTATGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTGATGAATGGCTCCCCCTCATTCCTTAAGCTCAAATTTATGG  395

seq1  TTTAATTCTGACATGGATGTGGGAATATAACTTTAAACTGGAAGGAAGTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTGACATGGATGTGGGAATATAACTTTAAACTGGAAGGAAGTC  445

seq1  TAGTGTGTATCCTAGAGGATGGACTAAAAAAAAGTTTGTACTTTGAGACA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTATCCTAGAGGATGGACTAAAAAAAAGTTTGTACTTTGAGACA  495

seq1  TGCAGAGATTAGGATTCATTTTAGAGGAAAGATGGTCTTAGGAACAATCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGATTAGGATTCATTTTAGAGGAAAGATGGTCTTAGGAACAATCA  545

seq1  CAGTTTCTCTGTCCATTTCAGTTCATACTATTCTTGCTCCCACATAAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCTGTCCATTTCAGTTCATACTATTCTTGCTCCCACATAAAAA  595

seq1  ATTTAATAACTAGTATCTTTCATGGATTATCCTGCCATGTATTTGTAAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAACTAGTATCTTTCATGGATTATCCTGCCATGTATTTGTAAGA  645

seq1  GTAAATGCAATTCTGGGAAAAAAATCCTTTAGCCATCTAGTGTCAGAAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCAATTCTGGGAAAAAAATCCTTTAGCCATCTAGTGTCAGAAAA  695

seq1  GTGACATATATCATACCTCTTGTTTTCAAGGAGTCCAGTATGCTGGAACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATATCATACCTCTTGTTTTCAAGGAGTCCAGTATGCTGGAACA  745

seq1  GATGGTGTCACTGTGAAGTACCAAATGATGCTGAAATAAAGGCAATGAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTCACTGTGAAGTACCAAATGATGCTGAAATAAAGGCAATGAAG  795

seq1  GCAGATTGTGCAGAAAATCTTAAGCCAATTGTGAAGATTTGGCTTCTTAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTGTGCAGAAAATCTTAAGCCAATTGTGAAGATTTGGCTTCTTAC  845

seq1  CTCTGCCACGTGCAGAAGCAATGGATTTGAGTGAGGGAGTGACATTATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACGTGCAGAAGCAATGGATTTGAGTGAGGGAGTGACATTATTT  895

seq1  TCACATCTTAGCAGCCTCCTCTGATATATTAGCCTTCCACCCGTAACTTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTAGCAGCCTCCTCTGATATATTAGCCTTCCACCCGTAACTTT  945

seq1  ATTGCAAGAGTAGGACTGGTCACCAGTTCAGATGTCATTGAAATTACATA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGAGTAGGACTGGTCACCAGTTCAGATGTCATTGAAATTACATA  995

seq1  GATTTGAAATGATGATCTTCTGGTCCAGGGATAACTGAGGCATTAATTTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAATGATGATCTTCTGGTCCAGGGATAACTGAGGCATTAATTTG  1045

seq1  TATGTGTCATCTCAAAGGAGAAAACATAAGCTCTTCTTTTTACAATCTCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCATCTCAAAGGAGAAAACATAAGCTCTTCTTTTTACAATCTCC  1095

seq1  CACCATCCATGCACGTTCAATTAAACAAAACCATAAAAATAAAAAAGAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCATGCACGTTCAATTAAACAAAACCATAAAAATAAAAAAGAAT  1145

seq1  TC  1140
      ||
seq2  TC  1147


seq1: chr2_42972354_42973455
seq2: B6Ng01-296N15.g_69_1169

seq1  GAATTCCTTGTGGCTCCTAACTAGAACACAGCATTTTCTCTGACTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTGGCTCCTAACTAGAACACAGCATTTTCTCTGACTATTGT  50

seq1  ACTAAAATTATTTTCTATCCTTATTTTATTCTGCCATTTTTTTTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTATTTTCTATCCTTATTTTATTCTGCCATTTTTTTTTAACTG  100

seq1  GAACATGGACAGACCTGTGCATTTTTTCCTAACATCATTTCTTTTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGACAGACCTGTGCATTTTTTCCTAACATCATTTCTTTTAAAAT  150

seq1  TAGTGCATTTATCAAAGAAAACAAGAATGTGTGAAGCTAAATAACATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATTTATCAAAGAAAACAAGAATGTGTGAAGCTAAATAACATCAT  200

seq1  TTCTAGTAAATCAAGCAAAGGTAAATTTCTGATTACCTTTGAAACCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTAAATCAAGCAAAGGTAAATTTCTGATTACCTTTGAAACCTGAG  250

seq1  TATTGCTGTCTTCAACTATCTCTAATTATTCTTGTTGGTACATAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTCTTCAACTATCTCTAATTATTCTTGTTGGTACATAAATTCA  300

seq1  TAAATCCCTGGAATCCAAGGCTTGCCTGGGGTTTTATTTCTGTTGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCTGGAATCCAAGGCTTGCCTGGGGTTTTATTTCTGTTGTTGAT  350

seq1  TTATTTGTGACTAATTTTCCTCATGTTTCTTCATTTCTTCAAGAGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTGACTAATTTTCCTCATGTTTCTTCATTTCTTCAAGAGCCAGA  400

seq1  CACTCCTTTCTGTCTAGTTTTTCATTTTTTATTCTTTCAGAAAGTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTCTGTCTAGTTTTTCATTTTTTATTCTTTCAGAAAGTATTTA  450

seq1  CACATGTAATCTTGGCCTCTGTACTCCAGGGAATTTAATTAACTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAATCTTGGCCTCTGTACTCCAGGGAATTTAATTAACTTTTGTT  500

seq1  TTGATTCGCAATTTATTTAATTAGGAAAAGTCATTTGATCTTCATGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCGCAATTTATTTAATTAGGAAAAGTCATTTGATCTTCATGAATC  550

seq1  GTAAATTGCGAAGTCAACACGTGTCAGCCTGTGGTATTTTTGTTTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGCGAAGTCAACACGTGTCAGCCTGTGGTATTTTTGTTTCTTTG  600

seq1  AATTGACATTATGTTTACTCAGCTCTTCATAACTTATAAGATTATGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACATTATGTTTACTCAGCTCTTCATAACTTATAAGATTATGATTT  650

seq1  TTATTGGTGGAAAACTGTGGAGAGCTGTAAGTAATTGCCATTACAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGGAAAACTGTGGAGAGCTGTAAGTAATTGCCATTACAAGATG  700

seq1  GCGCTGGCTCCCGCTGTGCCTAACTAGTAAACAAGCATTGTGCGCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCTCCCGCTGTGCCTAACTAGTAAACAAGCATTGTGCGCAGGTG  750

seq1  CAAGAGTGAATTCATGCCAAGTCACTGCCCATCTCGGGGTGTAACAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGAATTCATGCCAAGTCACTGCCCATCTCGGGGTGTAACAATGA  800

seq1  GGTGATGGGCGAGCAATGAATCCGGTGCTGACACGCCACGCTGAGGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGGCGAGCAATGAATCCGGTGCTGACACGCCACGCTGAGGGCTA  850

seq1  TATAAGCAGCACCATTTTCTGGGTTCTGGGTC-TTCCCTCCTGAAGAAGC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATAAGCAGCACCATTTTCTGGGTTCTGGGTCTTTCCCTCCTGAAGAAGC  900

seq1  AATAAAGCTTTTGCTGCAGAAGAAT--CCGGTTG-TCCGAGTG-TGTTCT  945
      |||||||||||||||||||||||||  | ||||| |||||||| ||||||
seq2  AATAAAGCTTTTGCTGCAGAAGAATTCCGGGTTGTTCCGAGTGTTGTTCT  950

seq1  TG-CCGGCGAGAACAA-TAGCTCGGGACAGAAAA-CTATGTAGTTTTTCA  992
      || ||||||||||||| |||||| |||||||||| |||||||||||||||
seq2  TGCCCGGCGAGAACAATTAGCTC-GGACAGAAAACCTATGTAGTTTTTCA  999

seq1  TGTTGCCACAACTCAATAATTAGGTATTTTTCAAATTTAATATGCAATAA  1042
      ||||||||| |||||   ||||||||||||||||||||||||||||   |
seq2  TGTTGCCAC-ACTCA--TATTAGGTATTTTTCAAATTTAATATGCA--TA  1044

seq1  AAAGTGATAACTTAAACGTCATTGC-AGCATAAAGTACGTGACCCCAACT  1091
      |||||||| || ||| ||||||||| |||||  ||||||||| ||||   
seq2  AAAGTGAT-ACCTAACCGTCATTGCAAGCAT-TAGTACGTGAACCCA--C  1090

seq1  TTAATAATAAA  1102
      |||||| ||||
seq2  TTAATATTAAA  1101


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