BAC Information

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BAC

Clone NameB6Ng01-298H16
Chromosome2 (Build37)
Map Location 110,692,049 - 110,834,354
singlet/doubletdoublet
Overlap geneLOC668802
Upstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298H16.bB6Ng01-298H16.g
ACCGA093574GA093575
length4111,136
definitionB6Ng01-298H16.b B6Ng01-298H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,692,049 - 110,692,459)(110,833,205 - 110,834,354)
sequence
gaattctcattccttattaccaatactctgcattaataaaccaggaaaag
acaatcttttcctaaatgcttattaaagcagcttgtctcattttctctag
aattttccttcaattaagtctaataatttctaccacttgtagatttatga
gaatggctttttttttggtatggttgtttgtggtacttaattgtttctga
atatttttcagccacacacatgtagtaaagatgataaaattgtattaatc
ttaatgattatgactgttgataatataaatgtatatttcaactaaagtaa
atattgtattttcctgaatttaattaagttttaatattattattatcatc
tctttctcccttgccccctgtttgtgtgtgtgtgtatatatgtgtgtgtg
tgtgtgtgtgt
gaattcccaaagactgacactcaattagcttacatgcacagtaacaaaac
aaaagattttatattaaaatggaggcaaggactgataatcatctcagttg
catgttgacctccacatgtgagctttggtacaacccacaattaacacaca
gagagattagatgtgtagacgcagagatttttcctttcaagcatttcctc
atgtcatatttcccgtttgaaaagacttttgtaaaacagacagattttgg
ttatttcatgtaacagtgaaagaaagatgagtagatttataataaatgtt
tatgatggaattcttgggatgataaaatctagccacacccttacttcata
agaccttttcctggaaataaggatgagaaaccctctaaagcaccgggtgt
gttctcatatagagtatagagttcaaatgtactgagagtgatttataatt
gctgtaagtggagcaaattgcaagacttctcttaaatgtaaaaggtttaa
aaacatctttagccaatcagtctccttttcatcccagtgcatgttctaag
tgagttataatagaatagaatacagctacattttgtggttactcattctt
ctcagacatcaatatgtttacttagaacttaaaactcaaattataaacta
ctcaggaatatgagaatataggttaattgggaaaagtgtaaataaatata
attcgacatgatgttccaaatgccttttaaatcataaataatcttttact
catatttccacattgaaattttatttcataaaatcatggatgagcgctgt
aattttaaggaagtttaagacagtgtattctagtcaccatagatggctgg
atatctcatgattgatccagaagtggctcatctctttaattcatattctg
atgctatccggagaaagataaattacagattaaatcttaggatttgtttt
ttcttcctagagttatagccttagtgccttatatcattgtcatttagatg
gtctttgtatgcaattagaatctgtttgaagatgggaaacaatagaaagt
gttcaaagacaagctgcaatgcaaacaccagttaatgcctgactatagtg
catgaatgttacatatggcagtctcaagtgctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110692049_110692459
seq2: B6Ng01-298H16.b_45_455

seq1  GAATTCTCATTCCTTATTACCAATACTCTGCATTAATAAACCAGGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCCTTATTACCAATACTCTGCATTAATAAACCAGGAAAAG  50

seq1  ACAATCTTTTCCTAAATGCTTATTAAAGCAGCTTGTCTCATTTTCTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTTTCCTAAATGCTTATTAAAGCAGCTTGTCTCATTTTCTCTAG  100

seq1  AATTTTCCTTCAATTAAGTCTAATAATTTCTACCACTTGTAGATTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTTCAATTAAGTCTAATAATTTCTACCACTTGTAGATTTATGA  150

seq1  GAATGGCTTTTTTTTTGGTATGGTTGTTTGTGGTACTTAATTGTTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTTTTTTTTGGTATGGTTGTTTGTGGTACTTAATTGTTTCTGA  200

seq1  ATATTTTTCAGCCACACACATGTAGTAAAGATGATAAAATTGTATTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCAGCCACACACATGTAGTAAAGATGATAAAATTGTATTAATC  250

seq1  TTAATGATTATGACTGTTGATAATATAAATGTATATTTCAACTAAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTATGACTGTTGATAATATAAATGTATATTTCAACTAAAGTAA  300

seq1  ATATTGTATTTTCCTGAATTTAATTAAGTTTTAATATTATTATTATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATTTTCCTGAATTTAATTAAGTTTTAATATTATTATTATCATC  350

seq1  TCTTTCTCCCTTGCCCCCTGTTTGTGTGTGTGTGTATATATGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCCTTGCCCCCTGTTTGTGTGTGTGTGTATATATGTGTGTGTG  400

seq1  TGTGTGTGTGT  411
      |||||||||||
seq2  TGTGTGTGTGT  411

seq1: chr2_110833205_110834354
seq2: B6Ng01-298H16.g_67_1202 (reverse)

seq1  CCAGAGCAC-TGAGA-TGGCATAATATTAAGGCATTCATGCACTATAGTT  48
      ||||||||| ||||| || ||||    |||  |||||||||||||||| |
seq2  CCAGAGCACTTGAGACTGCCATA--TGTAA--CATTCATGCACTATAG-T  45

seq1  CAGCCATTTAACTGGTTGTTTGCCATTTGCAGCTTGTCTTTGAACACTTT  98
      ||| || |||||||| |||||||   ||||||||||||||||||||||||
seq2  CAGGCA-TTAACTGG-TGTTTGC--ATTGCAGCTTGTCTTTGAACACTTT  91

seq1  CTATTTGTTTCCCATTCTTCAAAACAAGATTCTAAATTTGCATACAAAAG  148
      ||| |||||||||| ||||||||   |||||||||  |||||||| ||||
seq2  CTA-TTGTTTCCCA-TCTTCAAA--CAGATTCTAA--TTGCATAC-AAAG  134

seq1  ACCAATCTAAATGACAATGATATTAAGCACTAGGGCTAATAACTCTAGGA  198
      ||| ||||||||||||||||||| | |||||| |||| ||||||||||||
seq2  ACC-ATCTAAATGACAATGATATAAGGCACTAAGGCT-ATAACTCTAGGA  182

seq1  --GAAAAACAAATCCTAAGATTTAATCTGTAATTTATCTTTCTCCGGATA  246
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACAAATCCTAAGATTTAATCTGTAATTTATCTTTCTCCGGATA  232

seq1  GCATCAGAATATGAATTAAAGAGATGAGCCACTTCTGGATCAATCATGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAATATGAATTAAAGAGATGAGCCACTTCTGGATCAATCATGAG  282

seq1  ATATCCAGCCATCTATGGTGACTAGAATACACTGTCTTAAACTTCCTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGCCATCTATGGTGACTAGAATACACTGTCTTAAACTTCCTTAA  332

seq1  AATTACAGCGCTCATCCATGATTTTATGAAATAAAATTTCAATGTGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGCGCTCATCCATGATTTTATGAAATAAAATTTCAATGTGGAAA  382

seq1  TATGAGTAAAAGATTATTTATGATTTAAAAGGCATTTGGAACATCATGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTAAAAGATTATTTATGATTTAAAAGGCATTTGGAACATCATGTC  432

seq1  GAATTATATTTATTTACACTTTTCCCAATTAACCTATATTCTCATATTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATTTATTTACACTTTTCCCAATTAACCTATATTCTCATATTCC  482

seq1  TGAGTAGTTTATAATTTGAGTTTTAAGTTCTAAGTAAACATATTGATGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTTTATAATTTGAGTTTTAAGTTCTAAGTAAACATATTGATGTC  532

seq1  TGAGAAGAATGAGTAACCACAAAATGTAGCTGTATTCTATTCTATTATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAATGAGTAACCACAAAATGTAGCTGTATTCTATTCTATTATAA  582

seq1  CTCACTTAGAACATGCACTGGGATGAAAAGGAGACTGATTGGCTAAAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAGAACATGCACTGGGATGAAAAGGAGACTGATTGGCTAAAGAT  632

seq1  GTTTTTAAACCTTTTACATTTAAGAGAAGTCTTGCAATTTGCTCCACTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAACCTTTTACATTTAAGAGAAGTCTTGCAATTTGCTCCACTTA  682

seq1  CAGCAATTATAAATCACTCTCAGTACATTTGAACTCTATACTCTATATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTATAAATCACTCTCAGTACATTTGAACTCTATACTCTATATGA  732

seq1  GAACACACCCGGTGCTTTAGAGGGTTTCTCATCCTTATTTCCAGGAAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCCGGTGCTTTAGAGGGTTTCTCATCCTTATTTCCAGGAAAAG  782

seq1  GTCTTATGAAGTAAGGGTGTGGCTAGATTTTATCATCCCAAGAATTCCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGAAGTAAGGGTGTGGCTAGATTTTATCATCCCAAGAATTCCAT  832

seq1  CATAAACATTTATTATAAATCTACTCATCTTTCTTTCACTGTTACATGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATTTATTATAAATCTACTCATCTTTCTTTCACTGTTACATGAA  882

seq1  ATAACCAAAATCTGTCTGTTTTACAAAAGTCTTTTCAAACGGGAAATATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAAAATCTGTCTGTTTTACAAAAGTCTTTTCAAACGGGAAATATG  932

seq1  ACATGAGGAAATGCTTGAAAGGAAAAATCTCTGCGTCTACACATCTAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGAAATGCTTGAAAGGAAAAATCTCTGCGTCTACACATCTAATC  982

seq1  TCTCTGTGTGTTAATTGTGGGTTGTACCAAAGCTCACATGTGGAGGTCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTTAATTGTGGGTTGTACCAAAGCTCACATGTGGAGGTCAA  1032

seq1  CATGCAACTGAGATGATTATCAGTCCTTGCCTCCATTTTAATATAAAATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAACTGAGATGATTATCAGTCCTTGCCTCCATTTTAATATAAAATC  1082

seq1  TTTTGTTTTGTTACTGTGCATGTAAGCTAATTGAGTGTCAGTCTTTGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTACTGTGCATGTAAGCTAATTGAGTGTCAGTCTTTGGGA  1132

seq1  ATTC  1150
      ||||
seq2  ATTC  1136