BAC Information

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BAC

Clone NameB6Ng01-300H19
Chromosome2 (Build37)
Map Location 34,638,423 - 34,748,299
singlet/doubletdoublet
Overlap geneRabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik
Upstream gene2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5
Downstream genePhf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300H19.bB6Ng01-300H19.g
ACCGA095051GA095052
length7541,085
definitionB6Ng01-300H19.b B6Ng01-300H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,638,423 - 34,639,175)(34,747,212 - 34,748,299)
sequence
gaattcaaaaccaatttggtatacaaaaagcaagttccaggacagccaag
gtacaaagagatacactgccttggaaataaatgaaggaagggagggaggg
agggagggaaaaccctgcagccaatgaagaaatcccagctagcgagctgc
ctctgaggacctagtgagaactcgaatactctgcataggtgttcttgtgc
ctccggcctctcatccctcttctctgtagtctggagcaaactaggcttgg
ctcatgtatccatccacccgctcttgagcagataagcacttactcactct
ctggctgacggcattcgtgctggaaatgtacagataaaggaaagacgaag
tcccgccctcaatggagctaacagtcagaaaggctcagccgagagcccag
cccttctgagggagagataatcttcaggttctttctggctttctttttcc
tgggcttttggccatgaagccctgcaaacatgcagttccggtcatccaac
tttgttatctagaccagacatggagtaagaaccaaggcctcacaggtttc
tagctgggaacacaacgtgtaggaactgatggtggaaaggatcagtgcct
gaacacatactgagtcttggggaacgactgcatttaaaaatagagttgga
tgtggtggcgcacaccccttagttccagcactcaagaggctgatgcactg
atctctgtgagttcaagaacagctggtctacacagtaagctctagggcca
gcat
gaattcccatgtgcagacactagtttgggacccaacgctgtcttccacag
ctacattctgggagaacgatgtgggataggggcaggtcactaaatgctac
tctcccttcctccatggagtgggttacaccctccaaatctgtggcaagga
agaaacaccacaatgaatgtacaagtgtcaggctgactggcagatgtctg
tgagggactgattaacccctttgaataaaaagtggggaggtgcttggttt
agaatctgactcctgttcacatcctcatgttccccttaggtggctcatgc
cctctggccttagattccaccagcaaaatggggataacggataagcctaa
cttagccaaaataagacaggaagcttcctccgggcatggtggcgcacgcc
tttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgag
gccagcttggtctacagagcgagttccagaacagccagggctatacagag
aaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaagaaaagaaa
agaaaaaaaaaggataagaagcttcctaaacagctcaagaaaggttatgt
tgatgacatacataccacagaatacaaatcaattaaaaccacaggtataa
tagtctcttagattttttttaaaaaaaatagacattatgcctattacaac
ttaaaagtaaattcatggtgtagagaaagctttgtttatttaaatccttg
aaactgaaatgtcaacttgggaagtaattcttaagccttgggcaagagat
caacaagattcagacaggcctctgacctccgacccaggagagaggctttt
caaggtagaggggacttcatgagcacagggacagtgcagggtagggtcac
ccatctgccacacaggggacacttgaaggtgggaatgggaaaggacagcg
ttctgaaaggaagaacctataaactggactttcctccaaaaagcaacaat
ggtccatctggggtcatttagtagggttttcaagacttgtgtatactcag
aactgtattttagacagaaatctccactcctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34638423_34639175
seq2: B6Ng01-300H19.b_46_799

seq1  GAATTCAAAACCAATTTGGTATACAAAAAGCAAGTTCCAGGACAGCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAATTTGGTATACAAAAAGCAAGTTCCAGGACAGCCAAG  50

seq1  GTACAAAGAGATACACTGCCTTGGAAATAAATGAAGGAAGGGAGGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGAGATACACTGCCTTGGAAATAAATGAAGGAAGGGAGGGAGGG  100

seq1  AGGGAGGGAAAACCCTGCAGCCAATGAAGAAATCCCAGCTAGCGAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAAAACCCTGCAGCCAATGAAGAAATCCCAGCTAGCGAGCTGC  150

seq1  CTCTGAGGACCTAGTGAGAACTCGAATACTCTGCATAGGTGTTCTTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGACCTAGTGAGAACTCGAATACTCTGCATAGGTGTTCTTGTGC  200

seq1  CTCCGGCCTCTCATCCCTCTTCTCTGTAGTCTGGAGCAAACTAGGCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCCTCTCATCCCTCTTCTCTGTAGTCTGGAGCAAACTAGGCTTGG  250

seq1  CTCATGTATCCATCCACCCGCTCTTGAGCAGATAAGCACTTACTCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTATCCATCCACCCGCTCTTGAGCAGATAAGCACTTACTCACTCT  300

seq1  CTGGCTGACGGCATTCGTGCTGGAAATGTACAGATAAAGGAAAGACGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGACGGCATTCGTGCTGGAAATGTACAGATAAAGGAAAGACGAAG  350

seq1  TCCCGCCCTCAATGGAGCTAACAGTCAGAAAGGCTCAGCCGAGAGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCCTCAATGGAGCTAACAGTCAGAAAGGCTCAGCCGAGAGCCCAG  400

seq1  CCCTTCTGAGGGAGAGATAATCTTCAGGTTCTTTCTGGCTTTCTTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGAGGGAGAGATAATCTTCAGGTTCTTTCTGGCTTTCTTTTTCC  450

seq1  TGGGCTTTTGGCCATGAAGCCCTGCAAACATGCAGTTCCGGTCATCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTGGCCATGAAGCCCTGCAAACATGCAGTTCCGGTCATCCAAC  500

seq1  TTTGTTATCTAGACCAGACATGGAGTAAGAACCAAGGCCTCACAGGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATCTAGACCAGACATGGAGTAAGAACCAAGGCCTCACAGGTTTC  550

seq1  TAGCTGGGAACACAACGTGTAGGAACTGATGGTGGAAAGGATCAGTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGAACACAACGTGTAGGAACTGATGGTGGAAAGGATCAGTGCCT  600

seq1  GAACACATACTGAGTCTTGGGGAACGACTGCATTTAAAAATAGAGTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATACTGAGTCTTGGGGAACGACTGCATTTAAAAATAGAGTTGGA  650

seq1  TGTGGTGGCGCACA-CCCTTAGTTCCAGCACTCAAGAGGCTGAGGCACTG  699
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TGTGGTGGCGCACACCCCTTAGTTCCAGCACTCAAGAGGCTGATGCACTG  700

seq1  ATCTCTGTGAGTTCAAGAACAGCTTGGTCTACACAGCAAGCTCTA-GGCC  748
      ||||||||||||||||||||||| |||||||||||| |||||||| ||||
seq2  ATCTCTGTGAGTTCAAGAACAGC-TGGTCTACACAGTAAGCTCTAGGGCC  749

seq1  AGTAT  753
      || ||
seq2  AGCAT  754

seq1: chr2_34747212_34748299
seq2: B6Ng01-300H19.g_69_1153 (reverse)

seq1  GCTGAGGAGTGGAGATTTCTGGTCTTAAAATACCAGTTTCTGAAGTATAC  50
      |||||||||||||||||||| ||| ||||||| ||| ||||| |||||||
seq2  GCTGAGGAGTGGAGATTTCT-GTC-TAAAATA-CAG-TTCTG-AGTATAC  45

seq1  ACAAGTCTTGAAAACCCTACTTAAAATGACCCCAGATGGACCA-TGTTGC  99
      |||||||||||||||||||||  |||||||||||||||||||| ||||||
seq2  ACAAGTCTTGAAAACCCTACT--AAATGACCCCAGATGGACCATTGTTGC  93

seq1  TTTTTGGA-GAAAGTCCAGTTTATAGG-TCTTCCTTTCAGAACGCTGTCC  147
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTGGAGGAAAGTCCAGTTTATAGGTTCTTCCTTTCAGAACGCTGTCC  143

seq1  TTT-CCATTCCCACC-TCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCT  195
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTCCCACCTTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCT  193

seq1  ACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACCTTTGAAAAGCC  245
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACC-TTGAAAAGCC  242

seq1  TCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTT  292

seq1  GCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGTTTCAAGGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGTTTCAAGGAT  342

seq1  TTAAATAAACAAAGCTTTCTCTACACCATGAATTTACTTTTAAGTTGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAACAAAGCTTTCTCTACACCATGAATTTACTTTTAAGTTGTAA  392

seq1  TAGGCATAATGTCTATTTTTTTTAAAAAAAATCTAAGAGACTATTATACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATAATGTCTATTTTTTTTAAAAAAAATCTAAGAGACTATTATACC  442

seq1  TGTGGTTTTAATTGATTTGTATTCTGTGGTATGTATGTCATCAACATAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTAATTGATTTGTATTCTGTGGTATGTATGTCATCAACATAAC  492

seq1  CTTTCTTGAGCTGTTTAGGAAGCTTCTTATCCTTTTTTTTTCTTTTCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGAGCTGTTTAGGAAGCTTCTTATCCTTTTTTTTTCTTTTCTTT  542

seq1  TCTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTA  592

seq1  TAGCCCTGGCTGTTCTGGAACTCGCTCTGTAGACCAAGCTGGCCTCGAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTTCTGGAACTCGCTCTGTAGACCAAGCTGGCCTCGAAC  642

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGC  692

seq1  GCCACCATGCCCGGAGGAAGCTTCCTGTCTTATTTTGGCTAAGTTAGGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGCCCGGAGGAAGCTTCCTGTCTTATTTTGGCTAAGTTAGGCT  742

seq1  TATCCGTTATCCCCATTTTGCTGGTGGAATCTAAGGCCAGAGGGCATGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTTATCCCCATTTTGCTGGTGGAATCTAAGGCCAGAGGGCATGAG  792

seq1  CCACCTAAGGGGAACATGAGGATGTGAACAGGAGTCAGATTCTAAACCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAGGGGAACATGAGGATGTGAACAGGAGTCAGATTCTAAACCAA  842

seq1  GCACCTCCCCACTTTTTATTCAAAGGGGTTAATCAGTCCCTCACAGACAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCCCACTTTTTATTCAAAGGGGTTAATCAGTCCCTCACAGACAT  892

seq1  CTGCCAGTCAGCCTGACACTTGTACATTCATTGTGGTGTTTCTTCCTTGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTCAGCCTGACACTTGTACATTCATTGTGGTGTTTCTTCCTTGC  942

seq1  CACAGATTTGGAGGGTGTAACCCACTCCATGGAGGAAGGGAGAGTAGCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTGGAGGGTGTAACCCACTCCATGGAGGAAGGGAGAGTAGCAT  992

seq1  TTAGTGACCTGCCCCTATCCCACATCGTTCTCCCAGAATGTAGCTGTGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACCTGCCCCTATCCCACATCGTTCTCCCAGAATGTAGCTGTGGA  1042

seq1  AGACAGCGTTGGGTCCCAAACTAGTGTCTGCACATGGGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCGTTGGGTCCCAAACTAGTGTCTGCACATGGGAATTC  1085