BAC Information

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BAC

Clone NameB6Ng01-301C04
Chromosome2 (Build37)
Map Location 73,259,428 - 73,316,150
singlet/doubletdoublet
Overlap geneWipf1
Upstream geneB230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301C04.bB6Ng01-301C04.g
ACCGA095527GA095528
length1,1501,116
definitionB6Ng01-301C04.b B6Ng01-301C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,314,994 - 73,316,150)(73,259,428 - 73,260,537)
sequence
gaattccacaggtctgtgtgtgtgttcagagctccccgcatccacttccc
agaagcatgaagtaaaacaaactggagcattttagcagttcaaaaagcat
tttgtaattctacacgagcagccagcagcactgcagaatggttttcacag
taaacctaacataatggaacccacccgtttcaagtagttgctcttaggtg
ggacaatccacagatccatgaataacatgtttcctcggcctctgccccat
acagtgatgggcaccttgagagcaatgttacctgtgagttaaaatcatgc
tgatcaggcagacccacagaacacctgaatgcaaaagccgttagccagca
gcagtgtcccagtctgtatgcccagatataactggactcggggatactgt
caggcagacgccccagggagatctgagtgaaatgttctgcaggccttaga
agtaatccaggacccagaggttgtggccgcagcacaggcactgggaagaa
aactgggtcctgtcctctccacgcaggccagagtgctgcagggatggagg
tcagctccaataagcaacatcctcccaaggggacgttcccaagcagtact
ctccatagttggtatttgttcttgtttgccccgacgcagaaatgctggtt
atcaaacaatcgggatgcttcaaaaaccagttagtgaattgttcgcagct
tctgttgcctcagcgaacaacagagtccccaagacttctgtaattccaca
gctgaaaagacagtgccaggcactgctctgggaccgagttctagcacttg
acagagtccagttttgaaacgtgttatatgtggcctctgtacccctgaga
aaatgagaacaaagcattcctgtgagcaagtgacaagagatttccagagg
tctgggatggcagaatttgaaacctgcaagcgtgtgtggggagttgactg
gttctgtggctcagcctcctccacagtagctcaagctattccatacttgc
tggcagcgtggctacaggggtcgtgactatgaaagaaaccgaggtaaagt
gccacctctcctcagggagattagtcctgttttcagtgcccagcttttaa
agagaaagaatcctgcagaaaacatttattctccccagtccgtttttatt

gaattccctgctaatggtgggagcatcatccccagggaggaggccgttct
aacaggctgttctgagagtctcaaggctagatttctctccagtagcttcc
tctgtttacacacctaaggtcacagggcctgacttgccatggtttctctc
tgttgtccttcatactggtgagtccaccattgctggggaggaatgcttat
gatggctaaagacttcctccaccccaatccctggtaatcatctccctttg
gtacctaccattctttacagtcatctttttttctctctctctttctacaa
gatctcctcactgtgtagcccagagtggcccaaaactcacccttcccctg
tctctgccaaagtagcaaaaattacaatggtgaaccgtgccagttctgac
agaaaatttaaaaattttgtcattcttgtgtgtacgtgatgcacatgtgt
gaatgtaggcatacacatgccgtggagtatgtgtgtagaggtcagacaac
aactgtcgggagtccttactcacgttctgggtgtctctttggatgccagg
ctttctaggtaagctctctttatcctctgtggtgtttgaaatagcatggt
ccccgtagactcatctatttaaatacttagtccctggttggtttacctgt
ttgggaaggattaggtgtggctttgttagaggagggtgtgttactatggg
tgggctctgaggtttcgaaaacccatgtcattcccaggtagcgctctctc
tttgtgacgctctcagctactgttccagcaccatgcctgcctgcctgctg
ccatgctgcctaccatgatggtcatggactcaccctctgacactgtaagc
aaacccccaattgactgtttccttttataagttgccttggtcacagtgtc
tcttcacagcaattagaccgggaactaagacatgcttctcaaccattctt
agcaccccgaacagtttggtaagtggttcctttagagacagtgccatcca
acatgcggcagccgtgccatgaaagccacgggccttgacagaaagcgagc
cttcgtgggtgctttgctttcatatatcttccatatggcaatgttaattc
taatgttcaggcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73314994_73316150
seq2: B6Ng01-301C04.b_49_1198 (reverse)

seq1  AATAAAAAAGGAACAGGGGGAGATAAATGTTTTCCTGCAGGATTCTTCTC  50
      |||||||| || || ||||   ||||||||||| ||||||||||||| ||
seq2  AATAAAAACGG-ACTGGGGAGAATAAATGTTTT-CTGCAGGATTCTT-TC  47

seq1  T-TTTAAAAGCTGGGGCCACTGAAAACAGGGACCTAAATCCTCCCTGGAG  99
      | |||||||||||||  |||||||||||||   ||||   |||||| |||
seq2  TCTTTAAAAGCTGGG--CACTGAAAACAGG--ACTAA--TCTCCCT-GAG  90

seq1  GAGA-GTGGCACTTTACCTCGGTTTCTTTCATAGTCACGACCCCTGTAGC  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGCACTTTACCTCGGTTTCTTTCATAGTCACGACCCCTGTAGC  140

seq1  CACGCTGCCAGCAAGTATGGAATAGCCTGAGCTACTGTGGAGGAGGCTGA  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACGCTGCCAGCAAGTATGGAATAGCTTGAGCTACTGTGGAGGAGGCTGA  190

seq1  GCCACAGAACCAGTCAACTCCCCACACACGCTTGCAGGTTTC-AATTCTG  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCACAGAACCAGTCAACTCCCCACACACGCTTGCAGGTTTCAAATTCTG  240

seq1  CCATCCCAGACCTCTGGAAATCTCTTGTCACTTGCTCACAGGAATGCTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGACCTCTGGAAATCTCTTGTCACTTGCTCACAGGAATGCTTT  290

seq1  GTTCTCATTTTCTCAGGGGTACAGAGGCCACATATAACACGTTTCAAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTTTCTCAGGGGTACAGAGGCCACATATAACACGTTTCAAAAC  340

seq1  TGGACTCTGTCAAGTGCTAGAACTCGGTCCCAGAGCAGTGCCTGGCACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGTCAAGTGCTAGAACTCGGTCCCAGAGCAGTGCCTGGCACTG  390

seq1  TCTTTTCAGCTGTGGAATTACAGAAGTCTTGGGGACTCTGTTGTTCGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAGCTGTGGAATTACAGAAGTCTTGGGGACTCTGTTGTTCGCTG  440

seq1  AGGCAACAGAAGCTGCGAACAATTCACTAACTGGTTTTTGAAGCATCCCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAGAAGCTGCGAACAATTCACTAACTGGTTTTTGAAGCATCCCG  490

seq1  ATTGTTTGATAACCAGCATTTCTGCGTCGGGGCAAACAAGAACAAATACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGATAACCAGCATTTCTGCGTCGGGGCAAACAAGAACAAATACC  540

seq1  AACTATGGAGAGTACTGCTTGGGAACGTCCCCTTGGGAGGATGTTGCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGAGAGTACTGCTTGGGAACGTCCCCTTGGGAGGATGTTGCTTA  590

seq1  TTGGAGCTGACCTCCATCCCTGCAGCACTCTGGCCTGCGTGGAGAGGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTGACCTCCATCCCTGCAGCACTCTGGCCTGCGTGGAGAGGACA  640

seq1  GGACCCAGTTTTCTTCCCAGTGCCTGTGCTGCGGCCACAACCTCTGGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGTTTTCTTCCCAGTGCCTGTGCTGCGGCCACAACCTCTGGGTC  690

seq1  CTGGATTACTTCTAAGGCCTGCAGAACATTTCACTCAGATCTCCCTGGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTACTTCTAAGGCCTGCAGAACATTTCACTCAGATCTCCCTGGGG  740

seq1  CGTCTGCCTGACAGTATCCCCGAGTCCAGTTATATCTGGGCATACAGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCCTGACAGTATCCCCGAGTCCAGTTATATCTGGGCATACAGACT  790

seq1  GGGACACTGCTGCTGGCTAACGGCTTTTGCATTCAGGTGTTCTGTGGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGCTGCTGGCTAACGGCTTTTGCATTCAGGTGTTCTGTGGGTC  840

seq1  TGCCTGATCAGCATGATTTTAACTCACAGGTAACATTGCTCTCAAGGTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATCAGCATGATTTTAACTCACAGGTAACATTGCTCTCAAGGTGC  890

seq1  CCATCACTGTATGGGGCAGAGGCCGAGGAAACATGTTATTCATGGATCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGTATGGGGCAGAGGCCGAGGAAACATGTTATTCATGGATCTG  940

seq1  TGGATTGTCCCACCTAAGAGCAACTACTTGAAACGGGTGGGTTCCATTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGTCCCACCTAAGAGCAACTACTTGAAACGGGTGGGTTCCATTAT  990

seq1  GTTAGGTTTACTGTGAAAACCATTCTGCAGTGCTGCTGGCTGCTCGTGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTTACTGTGAAAACCATTCTGCAGTGCTGCTGGCTGCTCGTGTA  1040

seq1  GAATTACAAAATGCTTTTTGAACTGCTAAAATGCTCCAGTTTGTTTTACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAAAATGCTTTTTGAACTGCTAAAATGCTCCAGTTTGTTTTACT  1090

seq1  TCATGCTTCTGGGAAGTGGATGCGGGGAGCTCTGAACACACACACAGACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTCTGGGAAGTGGATGCGGGGAGCTCTGAACACACACACAGACC  1140

seq1  TGTGGAATTC  1157
      ||||||||||
seq2  TGTGGAATTC  1150

seq1: chr2_73259428_73260537
seq2: B6Ng01-301C04.g_67_1182

seq1  GAATTCCCTGCTAATGGTGGGAGCATCATCCCCAGGGAGGAGGCCGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCTAATGGTGGGAGCATCATCCCCAGGGAGGAGGCCGTTCT  50

seq1  AACAGGCTGTTCTGAGAGTCTCAAGGCTAGATTTCTCTCCAGTAGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGTTCTGAGAGTCTCAAGGCTAGATTTCTCTCCAGTAGCTTCC  100

seq1  TCTGTTTACACACCTAAGGTCACAGGGCCTGACTTGCCATGGTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACACACCTAAGGTCACAGGGCCTGACTTGCCATGGTTTCTCTC  150

seq1  TGTTGTCCTTCATACTGGTGAGTCCACCATTGCTGGGGAGGAATGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCTTCATACTGGTGAGTCCACCATTGCTGGGGAGGAATGCTTAT  200

seq1  GATGGCTAAAGACTTCCTCCACCCCAATCCCTGGTAATCATCTCCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTAAAGACTTCCTCCACCCCAATCCCTGGTAATCATCTCCCTTTG  250

seq1  GTACCTACCATTCTTTACAGTCATCTTTTTTTCTCTCTCTCTTTCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACCATTCTTTACAGTCATCTTTTTTTCTCTCTCTCTTTCTACAA  300

seq1  GATCTCCTCACTGTGTAGCCCAGAGTGGCCCAAAACTCACCCTTCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTCACTGTGTAGCCCAGAGTGGCCCAAAACTCACCCTTCCCCTG  350

seq1  TCTCTGCCAAAGTAGCAAAAATTACAATGGTGAACCGTGCCAGTTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCAAAGTAGCAAAAATTACAATGGTGAACCGTGCCAGTTCTGAC  400

seq1  AGAAAATTTAAAAATTTTGTCATTCTTGTGTGTACGTGATGCACATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTAAAAATTTTGTCATTCTTGTGTGTACGTGATGCACATGTGT  450

seq1  GAATGTAGGCATACACATGCCGTGGAGTATGTGTGTAGAGGTCAGACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGGCATACACATGCCGTGGAGTATGTGTGTAGAGGTCAGACAAC  500

seq1  AACTGTCGGGAGTCCTTACTCACGTTCTGGGTGTCTCTTTGGATGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCGGGAGTCCTTACTCACGTTCTGGGTGTCTCTTTGGATGCCAGG  550

seq1  CTTTCTAGGTAAGCTCTCTTTATCCTCTGTGGTGTTTGAAATAGCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGGTAAGCTCTCTTTATCCTCTGTGGTGTTTGAAATAGCATGGT  600

seq1  CCCCGTAGACTCATCTATTTAAATACTTAGTCCCTGGTTGGTTTACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTAGACTCATCTATTTAAATACTTAGTCCCTGGTTGGTTTACCTGT  650

seq1  TTGGGAAGGATTAGGTGTGGCTTTGTTAGAGGAGGGTGTGTTACTATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGATTAGGTGTGGCTTTGTTAGAGGAGGGTGTGTTACTATGGG  700

seq1  TGGGCTCTGAGGTTTCGAAAACCCATGTCATTCCCAGGTAGCGCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGAGGTTTCGAAAACCCATGTCATTCCCAGGTAGCGCTCTCTC  750

seq1  TTTGTGACGCTCTCAGCTACTGTTCCAGCACCATGCCTGCCTGCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACGCTCTCAGCTACTGTTCCAGCACCATGCCTGCCTGCCTGCTG  800

seq1  CCATGCTGCCTACCATGATGGTCATGGACTCACCCTCTGACACTGTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGCCTACCATGATGGTCATGGACTCACCCTCTGACACTGTAAGC  850

seq1  AAACCCCCAATTGACTGTTTCCTTTTATAAGTTGCCTTGGTCACAGTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCAATTGACTGTTTCCTTTTATAAGTTGCCTTGGTCACAGTGTC  900

seq1  TCTTCACAGCAA-TAGAACGGGAACTAAGACATGC-TCTCAACCA-TCTT  947
      |||||||||||| |||| ||||||||||||||||| ||||||||| ||||
seq2  TCTTCACAGCAATTAGACCGGGAACTAAGACATGCTTCTCAACCATTCTT  950

seq1  AGCACCCCCGACAG-TTGGTAAGGTGGTTCCTTTAGAGACAGTGCCATCC  996
      ||||||||  |||| ||||||| |||||||||||||||||||||||||||
seq2  AGCACCCCGAACAGTTTGGTAA-GTGGTTCCTTTAGAGACAGTGCCATCC  999

seq1  -ACATGCGGGCAG-CGTGCCATGGAAGCAACGGGCC-TGACAGAAAGCGA  1043
       |||||| ||||| ||||||||| |||| ||||||| |||||||||||||
seq2  AACATGC-GGCAGCCGTGCCATGAAAGCCACGGGCCTTGACAGAAAGCGA  1048

seq1  GGCCTTCGT-GGTGCTTTGC-TTCATATATC-TCCATATGGCAATGTT-A  1089
       |||||||| |||||||||| |||||||||| |||||||||||||||| |
seq2  -GCCTTCGTGGGTGCTTTGCTTTCATATATCTTCCATATGGCAATGTTAA  1097

seq1  TTCTAAAGGTTCAAGGCAAGG  1110
      |||| || |||| ||||||||
seq2  TTCT-AATGTTC-AGGCAAGG  1116