BAC Information

Click to search

BAC

Clone NameB6Ng01-302A16
Chromosome2 (Build37)
Map Location 54,545,389 - 54,579,751
singlet/doubletdoublet
Overlap geneGalnt13
Upstream geneLOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302A16.bB6Ng01-302A16.g
ACCGA096201GA096202
length1,1231,096
definitionB6Ng01-302A16.b B6Ng01-302A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,578,636 - 54,579,751)(54,545,389 - 54,546,484)
sequence
gaattctttgtttagctctgtaccccattttaatagggttatttgatttt
ctggagtccatcttcttgagttctttatatatattggatgttagtcccct
atcgtatttaggattagtaaagatctaagaaacaatggttttcttttagc
attatatgtgtggtctgtattttcatttgtgattgtaaggatgggagaag
catgttacaatatttgaaagcaagaaaatgaaaataataataaacagtgt
ccttaaacctagaacaatagcacatatggttattttccttagcaatctca
gtgtcttagtggagaaaatagcagcttattgtatctcctctacaaaggta
aatgcatttttcttcatcaaagctaatgaatttatttgatatttcaagag
tgttttgtatgtgtatgggaacacctactggttgttgtttctcacctttc
tgcaaggcaaaaaaaaaaaatagtaagtaattattgtgtggattcagcat
ttttttcaacttcgttttctagattgtacctgaaggaatgcatcctacta
gtggagaaaaaaagagaagtgtttctttaaatagcataaatacgatgtgg
gaaagaattagcaatttggctatgtggtttatttctgacgttctatactt
ttaaatggtaactgttagttttcttacctattgattcctttcttcttagt
agcataaggttaccacataccacaaaatacaattctacacagccaaagga
aaaagtcaaaatgaaatgttataaaatatttatccttcccatctccccta
ataggcaccacaatcagcatgccaacgcaacagctttggagagaaggcag
ctaaatctcctctctagtttctctatgattggtatatatgtggacagaaa
tattctcattgaaagactagtttagattacaaaaaagtaattaatatgtg
tattatatgttatcttctgctcattcttgggaaaaataattaaaaaataa
ttaacattttaattcgacattatttaaaattccctaagaattatcatagt
gcatgattatttttatgaacatttttatgtttgagcattgtgattttaat
taaccatggaacctaccttttag

gaattcactaatgagatgtgggatttctttttcatagctatgcctggaaa
ttctgtactgcaaatcttccaaacattgattagccttggaagattttgcc
tgtaagatttcaacattacgtcaagactgcattccaattctgatggatat
ttataataaaattatcaaatggatcttttatgattcttttttatgcattc
caccatctcaagtcacctttctatttttttgggttttgttcacttgtttg
ttcgtttgttgttttcagttaactcatgaatccacacaaatatatcatgc
acatacagagaataaattaaataatacaaactacagaaggggaacggtga
gattgctaaggaaaataataatcttgtcttatatttacactgtttctaca
ttgtagaacatagaagtcctgtcctattgtttctctcttctttatactga
actacaaaaattagtatagaaatccaatcccatactaacatcagtaagtg
atagggtggaatggcatatacaactaccaatgaaatatagttggtaagat
atagtttgaaaggagtaacacccttattttcacctttactaataacacct
ttattttcattgatttctcaaagcttaaacaagtgcctcagggaagcata
aaactatttacaaagtagaaaaagtaaacattaaaaatttttaactttcc
tttaaattttttatctttgggtagaaataaccttatattatttatctggg
tataagcatagctcatacataggtaatctaactgatcaaataataagacc
aggataaaaaaaaattgaaagcattaagtaactgtattaaagttattagg
ataaagggaagtgaacctgttcagcaatagttctttgggggcaagcttga
tcgttggcaacagttcagtccatagcaaacaccaaatataactcagaagc
tgcagaccaaatatatctctttgtcagtcagccaccaaggtgtgaagcat
cagctacagtttcaaccctctagtcagcagacatcagacataaaccagca
gttgtagttccatctaaagatactacaagcatggccatccatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54578636_54579751
seq2: B6Ng01-302A16.b_45_1167 (reverse)

seq1  CTAAAA-GTAGTTTCCAT-GTTAAATAAAATCACAATGCTCAAAACATAA  48
      |||||| |||| |||||| ||||| |||||||||||||||| ||||||||
seq2  CTAAAAGGTAGGTTCCATGGTTAATTAAAATCACAATGCTC-AAACATAA  49

seq1  AAATGTTCAT-AAAATAATCATGCACTTATGATAATTCT--AGGAAATTT  95
      |||||||||| ||||||||||||||| ||||||||||||   |||| |||
seq2  AAATGTTCATAAAAATAATCATGCAC-TATGATAATTCTTAGGGAATTTT  98

seq1  AAATAATGTCGAATT-AAATGTTAATTA-TTTTTAATTA-TTTTCCAAAG  142
      ||||||||||||||| |||||||||||| |||||||||| |||||| |||
seq2  AAATAATGTCGAATTAAAATGTTAATTATTTTTTAATTATTTTTCCCAAG  148

seq1  AATGAGCAGAAGATAACATATAATACACATATTAATTAC-TTTTTGTAAT  191
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGAGCAGAAGATAACATATAATACACATATTAATTACTTTTTTGTAAT  198

seq1  CTAAACTAGTCTTTCAATGAGAATATTTCTGTCCACATATATACCAATCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAGTCTTTCAATGAGAATATTTCTGTCCACATATATACCAATCA  248

seq1  TAGAGAAACTAGAGAGGAGATTTAGCTGCCTTCTCTCCAAAGCTGTTGCG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACTAGAGAGGAGATTTAGCTGCCTTCTCTCCAAAGCTGTTGCG  298

seq1  TTGGCATGCTGATTGTGGTGCCTATTAGGGGAGATGGGAAGGATAAATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGCTGATTGTGGTGCCTATTAGGGGAGATGGGAAGGATAAATAT  348

seq1  TTTATAACATTTCATTTTGACTTTTTCCTTTGGCTGTGTAGAATTGTATT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACATTTCATTTTGACTTTTTCCTTTGGCTGTGTAGAATTGTATT  398

seq1  TTGTGGTATGTGGTAACCTTATGCTACTAAGAAGAAAGGAATCAATAGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTATGTGGTAACCTTATGCTACTAAGAAGAAAGGAATCAATAGGT  448

seq1  AAGAAAACTAACAGTTACCATTTAAAAGTATAGAACGTCAGAAATAAACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTAACAGTTACCATTTAAAAGTATAGAACGTCAGAAATAAACC  498

seq1  ACATAGCCAAATTGCTAATTCTTTCCCACATCGTATTTATGCTATTTAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCAAATTGCTAATTCTTTCCCACATCGTATTTATGCTATTTAAA  548

seq1  GAAACACTTCTCTTTTTTTCTCCACTAGTAGGATGCATTCCTTCAGGTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTTCTCTTTTTTTCTCCACTAGTAGGATGCATTCCTTCAGGTAC  598

seq1  AATCTAGAAAACGAAGTTGAAAAAAATGCTGAATCCACACAATAATTACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAAACGAAGTTGAAAAAAATGCTGAATCCACACAATAATTACT  648

seq1  TACTATTTTTTTTTTTTGCCTTGCAGAAAGGTGAGAAACAACAACCAGTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTTTTTTTTTGCCTTGCAGAAAGGTGAGAAACAACAACCAGTA  698

seq1  GGTGTTCCCATACACATACAAAACACTCTTGAAATATCAAATAAATTCAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCCCATACACATACAAAACACTCTTGAAATATCAAATAAATTCAT  748

seq1  TAGCTTTGATGAAGAAAAATGCATTTACCTTTGTAGAGGAGATACAATAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGATGAAGAAAAATGCATTTACCTTTGTAGAGGAGATACAATAA  798

seq1  GCTGCTATTTTCTCCACTAAGACACTGAGATTGCTAAGGAAAATAACCAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATTTTCTCCACTAAGACACTGAGATTGCTAAGGAAAATAACCAT  848

seq1  ATGTGCTATTGTTCTAGGTTTAAGGACACTGTTTATTATTATTTTCATTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTATTGTTCTAGGTTTAAGGACACTGTTTATTATTATTTTCATTT  898

seq1  TCTTGCTTTCAAATATTGTAACATGCTTCTCCCATCCTTACAATCACAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCAAATATTGTAACATGCTTCTCCCATCCTTACAATCACAAA  948

seq1  TGAAAATACAGACCACACATATAATGCTAAAAGAAAACCATTGTTTCTTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACAGACCACACATATAATGCTAAAAGAAAACCATTGTTTCTTA  998

seq1  GATCTTTACTAATCCTAAATACGATAGGGGACTAACATCCAATATATATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTACTAATCCTAAATACGATAGGGGACTAACATCCAATATATATA  1048

seq1  AAGAACTCAAGAAGATGGACTCCAGAAAATCAAATAACCCTATTAAAATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAAGAAGATGGACTCCAGAAAATCAAATAACCCTATTAAAATG  1098

seq1  GGGTACAGAGCTAAACAAAGAATTC  1116
      |||||||||||||||||||||||||
seq2  GGGTACAGAGCTAAACAAAGAATTC  1123


seq1: chr2_54545389_54546484
seq2: B6Ng01-302A16.g_67_1162

seq1  GAATTCACTAATGAGATGTGGGATTTCTTTTTCATAGCTATGCCTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGAGATGTGGGATTTCTTTTTCATAGCTATGCCTGGAAA  50

seq1  TTCTGTACTGCAAATCTTCCAAACATTGATTAGCCTTGGAAGATTTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTGCAAATCTTCCAAACATTGATTAGCCTTGGAAGATTTTGCC  100

seq1  TGTAAGATTTCAACATTACGTCAAGACTGCATTCCAATTCTGATGGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATTTCAACATTACGTCAAGACTGCATTCCAATTCTGATGGATAT  150

seq1  TTATAATAAAATTATCAAATGGATCTTTTATGATTCTTTTTTATGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAAAATTATCAAATGGATCTTTTATGATTCTTTTTTATGCATTC  200

seq1  CACCATCTCAAGTCACCTTTCTATTTTTTTGGGTTTTGTTCACTTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTCAAGTCACCTTTCTATTTTTTTGGGTTTTGTTCACTTGTTTG  250

seq1  TTCGTTTGTTGTTTTCAGTTAACTCATGAATCCACACAAATATATCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTGTTGTTTTCAGTTAACTCATGAATCCACACAAATATATCATGC  300

seq1  ACATACAGAGAATAAATTAAATAATACAAACTACAGAAGGGGAACGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAGAATAAATTAAATAATACAAACTACAGAAGGGGAACGGTGA  350

seq1  GATTGCTAAGGAAAATAATAATCTTGTCTTATATTTACACTGTTTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTAAGGAAAATAATAATCTTGTCTTATATTTACACTGTTTCTACA  400

seq1  TTGTAGAACATAGAAGTCCTGTCCTATTGTTTCTCTCTTCTTTATACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAACATAGAAGTCCTGTCCTATTGTTTCTCTCTTCTTTATACTGA  450

seq1  ACTACAAAAATTAGTATAGAAATCCAATCCCATACTAACATCAGTAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAATTAGTATAGAAATCCAATCCCATACTAACATCAGTAAGTG  500

seq1  ATAGGGTGGAATGGCATATACAACTACCAATGAAATATAGTTGGTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGGAATGGCATATACAACTACCAATGAAATATAGTTGGTAAGAT  550

seq1  ATAGTTTGAAAGGAGTAACACCCTTATTTTCACCTTTACTAATAACACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGAAAGGAGTAACACCCTTATTTTCACCTTTACTAATAACACCT  600

seq1  TTATTTTCATTGATTTCTCAAAGCTTAAACAAGTGCCTCAGGGAAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCATTGATTTCTCAAAGCTTAAACAAGTGCCTCAGGGAAGCATA  650

seq1  AAACTATTTACAAAGTAGAAAAAGTAAACATTAAAAATTTTTAACTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTACAAAGTAGAAAAAGTAAACATTAAAAATTTTTAACTTTCC  700

seq1  TTTAAATTTTTTATCTTTGGGTAGAAATAACCTTATATTATTTATCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTTATCTTTGGGTAGAAATAACCTTATATTATTTATCTGGG  750

seq1  TATAAGCATAGCTCATACATAGGTAATCTAACTGATCAAATAATAAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCATAGCTCATACATAGGTAATCTAACTGATCAAATAATAAGACC  800

seq1  AGGAT-AAAAAAAATTGAAAGCATTAAGTAACTGTATTAAAGTTATTAGG  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAAAAAAATTGAAAGCATTAAGTAACTGTATTAAAGTTATTAGG  850

seq1  ATAAAGGGAAGTGAACCTGTTCAGCAATAGTTCTTTGGGGGCAAGCTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAAGTGAACCTGTTCAGCAATAGTTCTTTGGGGGCAAGCTTGA  900

seq1  TCGTTGGCAACAGTTCAGTCCCATAGCAAACACCAAATATAACTCAGAAG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCGTTGGCAACAGTTCAGT-CCATAGCAAACACCAAATATAACTCAGAAG  949

seq1  CTGCAGACCAAATATATCTC-TTGTCAGTCAGCCACC-AGGTGTGAAGCA  997
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  CTGCAGACCAAATATATCTCTTTGTCAGTCAGCCACCAAGGTGTGAAGCA  999

seq1  TCAGCTACAG-TTCAACCCTCTAGTCAGGCAGACATCAGACATAAACCAG  1046
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TCAGCTACAGTTTCAACCCTCTAGTCA-GCAGACATCAGACATAAACCAG  1048

seq1  CAGTTGTAGTTCAATCCTAAAGATACTACAAGGCATGCCCATCCATCTGA  1096
      |||||||||||| || ||||||||||||||| ||||| ||||||||||||
seq2  CAGTTGTAGTTCCAT-CTAAAGATACTACAA-GCATGGCCATCCATCTGA  1096


| Home | SequenceCutter | Blast | Download |