BAC Information

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BAC

Clone NameB6Ng01-302M03
Chromosome2 (Build37)
Map Location 36,665,921 - 36,666,976
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p
Downstream geneOlfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302M03.bB6Ng01-302M03.g
ACCGA096726GA096727
length1,0651,178
definitionB6Ng01-302M03.b B6Ng01-302M03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatacaagtccaaagaggaattattaacatattctggtggaaga
gaatacaaaagcgttctcaggaatgtgtaatttacttacatattaaatag
gaaattttcagacacactaatttccattttctggtcctgatcaaactgga
gcatcataaaacaagattgacctataaaccaacatgactcaagattgtaa
tattcaagttgaagatattgatggtgaatgccaggtgatccattatctga
gtttagactatctcaatgtaatggacatgaaaaaatacttgagctttgga
ggaaaaaaaacagtcttgcaaactgttttctctagattgagctgtggtat
gaaccccaactcctcccaacagggaagaaggtgctttcctcctcatacca
agctaaataacaaaggcttcaaaagaaacaattaaacagcttgatgtgtt
tctttttctctgatggaagagcaatggcaaaaaaagagatggtaagaggg
tggcagagagtatgatggagttgtgttcaagcgtcaccactaagagtaat
aaaatgtaaaaacacacttgtagagcacaagaagggtataagtgaggatg
cccagagaatatccaatgcttgtcaataaagactttctggaagtccaaca
agtttccaggaaaaagcatgaggtggtgacatggaatctagcactgcgaa
attgggagctcttgagggaaatagccacagtaaggaaaactgcttgggac
gtatcacaagactatgaagaggcattataagaggctaaatattcctgata
aacaagtagtgcagagaagagaatcatttattattgtctattttgatttg
ggcttaggtggtactggggactaaatctaggatctcaaatatggtggcaa
atactctactggagttatacccacagatttccttaaccaaattaagtacc
aataagtctcaagtaatgggcctagtaagccatcagtgggaggaagaggc
cccttggtcttgcaaagaattataatgccctaacataataacagtaacag
gggaatgtcaagacc
gaattcaaggcccatacataaacatgacaaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctcttcaacatag
tacttgaagtattagccagagcaattcgaaaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaacctaaaaattctaccagagaacgcctaaacc
tgataaacagcttcagtgaagtagctggatataaaataaactcaaacaag
tcaatggccttcctctatacaaagaataaacaggctgagaaagaatttag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggca
tgactctaactaaggaagtgaaagatctatatgataaaaacttcaaatct
ctggagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttt
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagaccagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccaggggaaagaaagacagcattttcaacatttgggtgct
ggcacaactggttgttatcatgtagaagaatgcgcatagattccatactt
atctcctagtactaaggtccaattctaagtggatcaaggaaacttcacat
aaaaaccagaagacactggaacttataagaaggagaaaggtgggaaagct
ttggaagaatatggcacaggattcattcatgacagaacagcaatggcctt
ggtgccgtgctaagtaatccgtaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36665921_36666976
seq2: B6Ng01-302M03.b_44_1108 (reverse)

seq1  GGTCCTGACATTCCCCTG-TACTGT--ATATG-TAGGGCA-TATAA-TCT  44
      |||| ||||||||||||| ||||||   |||| ||||||| ||||| |||
seq2  GGTCTTGACATTCCCCTGTTACTGTTATTATGTTAGGGCATTATAATTCT  50

seq1  TTGCAAGACCAA-GGGCCTC-TCCTCCCACTGATGGCCTACTAGG-CCAT  91
      |||||||||||| ||||||| |||||||||||||||| ||||||| ||||
seq2  TTGCAAGACCAAGGGGCCTCTTCCTCCCACTGATGGCTTACTAGGCCCAT  100

seq1  TACCTGAGACTTATTGGTACTTAATTTGGTTAAGGAAATCTGTGGGTATA  141
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGACTTATTGGTACTTAATTTGGTTAAGGAAATCTGTGGGTATA  150

seq1  ACTCCAGTAGAGTATTTGCCACCATATTTGAGATCCTAGATTTAGTCCCC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTAGAGTATTTGCCACCATATTTGAGATCCTAGATTTAGTCCCC  200

seq1  AGTACCACCTAAGCCCAAATCAAAATAGACAATAATAAATGATTCTCTTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACCTAAGCCCAAATCAAAATAGACAATAATAAATGATTCTCTTC  250

seq1  TCTGCACTACTTGTTTATCAGGAATATTTAGCCTCTTATAATGCCTCTTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTACTTGTTTATCAGGAATATTTAGCCTCTTATAATGCCTCTTC  300

seq1  ATAGTCTTGTGATACGTCCCAAGCAGTTTTCCTTACTGTGGCTATTTCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTGTGATACGTCCCAAGCAGTTTTCCTTACTGTGGCTATTTCCC  350

seq1  TCAAGAGCTCCCAATTTCGCAGTGCTAGATTCCATGTCACCACCTCATGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCTCCCAATTTCGCAGTGCTAGATTCCATGTCACCACCTCATGC  400

seq1  TTTTTCCTGGAAACTTGTTGGACTTCCAGAAAGTCTTTATTGACAAGCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGGAAACTTGTTGGACTTCCAGAAAGTCTTTATTGACAAGCAT  450

seq1  TGGATATTCTCTGGGCATCCTCACTTATACCCTTCTTGTGCTCTACAAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTCTCTGGGCATCCTCACTTATACCCTTCTTGTGCTCTACAAGT  500

seq1  GTGTTTTTACATTTTATTACTCTTAGTGGTGACGCTTGAACACAACTCCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTACATTTTATTACTCTTAGTGGTGACGCTTGAACACAACTCCA  550

seq1  TCATACTCTCTGCCACCCTCTTACCATCTCTTTTTTTGCCATTGCTCTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCTCTGCCACCCTCTTACCATCTCTTTTTTTGCCATTGCTCTTC  600

seq1  CATCAGAGAAAAAGAAACACATCAAGCTGTTTAATTGTTTCTTTTGAAGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAAAAAGAAACACATCAAGCTGTTTAATTGTTTCTTTTGAAGC  650

seq1  CTTTGTTATTTAGCTTGGTATGAGGAGGAAAGCACCTTCTTCCCTGTTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATTTAGCTTGGTATGAGGAGGAAAGCACCTTCTTCCCTGTTGG  700

seq1  GAGGAGTTGGGGTTCATACCACAGCTCAATCTAGAGAAAACAGTTTGCAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTGGGGTTCATACCACAGCTCAATCTAGAGAAAACAGTTTGCAA  750

seq1  GACTGTTTTTTTTCCTCCAAAGCTCAAGTATTTTTTCATGTCCATTACAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTTTTCCTCCAAAGCTCAAGTATTTTTTCATGTCCATTACAT  800

seq1  TGAGATAGTCTAAACTCAGATAATGGATCACCTGGCATTCACCATCAATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTCTAAACTCAGATAATGGATCACCTGGCATTCACCATCAATA  850

seq1  TCTTCAACTTGAATATTACAATCTTGAGTCATGTTGGTTTATAGGTCAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACTTGAATATTACAATCTTGAGTCATGTTGGTTTATAGGTCAAT  900

seq1  CTTGTTTTATGATGCTCCAGTTTGATCAGGACCAGAAAATGGAAATTAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATGATGCTCCAGTTTGATCAGGACCAGAAAATGGAAATTAGT  950

seq1  GTGTCTGAAAATTTCCTATTTAATATGTAAGTAAATTACACATTCCTGAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAAATTTCCTATTTAATATGTAAGTAAATTACACATTCCTGAG  1000

seq1  AACGCTTTTGTATTCTCTTCCACCAGAATATGTTAATAATTCCTCTTTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTTTGTATTCTCTTCCACCAGAATATGTTAATAATTCCTCTTTGG  1050

seq1  ACTTGTATAGAATTC  1056
      |||||||||||||||
seq2  ACTTGTATAGAATTC  1065