BAC Information

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BAC

Clone NameB6Ng01-303K18
Chromosome2 (Build37)
Map Location 173,165,531 - 173,341,825
singlet/doubletdoublet
Overlap genenone
Upstream gene2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303K18.bB6Ng01-303K18.g
ACCGA097417GA097418
length9941,117
definitionB6Ng01-303K18.b B6Ng01-303K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,165,531 - 173,166,468)(173,340,726 - 173,341,825)
sequence
gaattctaaccggcctcaatagaacagagcggccgtttactgtcttgggc
cgccgggctccttgtctagacagggcgagcattcagatggatttggattt
ccaggctgcagccggcccagcagcccctggcgaggctcccagctcggggg
attcatttactttgcattcgtgagcagacgccgcagaggtcccagttgtg
ggcctatcaccgcctcgcagggggccccagaggcactggctggtgcgctg
acttttcccagacaatttagctgcttacaagtcaataaaaacaaggttgc
ttgggacgggggcttcatcttcttccagccgcaccgctgtcagaacgcgt
gactgcgcaactgggaccattaaactcctaattagctttcagaatcggcg
ggctgggagtggagagggagcaagggacgggccctggctggcatctcacc
gagtgtcttgttttatttctctctcggctggaagtggagaaggttctgct
gtcactcacgggccagtgtaggagagtgcagctccattccttgttttttt
aagctgtgtgccctgtagccagttcctcacctctctgtgcctcaggttac
tcttgaagatgagctctggctgccgggggtgggggagtggcaagggcggc
attagagaagggtcagattattttagaagactaaaggggagttacacaag
gttattttttgaggaagggtctctcactggcacctggggcttgcctgttt
tggttaaacttgctgatcagtgaaattcagggatttgcctgcctgcctgc
ctgcctgactgtttagggtttctatttgctgcgacaaaacactatgacca
gagagcaagttgagggagggaggaaagggtttattcggtagacacttgtt
gttcattcataagggaaagtcagtacaggaaaaaggagctctggaatgac
gttaggtagcctgcttgcagaagtctattgtttggcgcttactg
gaattctcagcgcagatgttattccatctaaatccttttagagggaagaa
actagtaattatttttttcttaggggatgtcagaaaaatatattattttg
aaattatgttttgatcccagagttctacgcaaatattgtgagggactggg
tatgtcaagtcacttggacactaaatgtttttttttaaagtcccgagcgg
aaaaacagccagagtccttcattggcttcatattgcttctccccccaccc
ttctccagaaacctcttgcactaccgtgagcaggaaacacaactgaaaac
ttaacctctgccatgcatgaccaaacccatagaccccccccccccccgac
cgcagcagagagctgaatccaaagaccaagatgaacacccaatgattaga
aaggctgactcttgtgttcccctttgtctcccagtgttggagagacctct
tctcttctccaggggtgggtgggtgaccgaggttctgtcactcttgtgtg
tggattcacattagcacttcattcgtttttccatccccaaaggatgcaca
cagagagcctcaggcgtctccctccggggtggcggcggcttgtggtctga
ctgctcctccagcagtggcactctgggtttggaagggacagtcatcttca
agtgcccagcagtgtgaacaattgtcaaataactgacatttccaagtcat
ttatttatagaggtggattgtgggggcagggccactgtcagcaggacatg
tgtcacaggccctgacgacagcctcctctgacttaggtcttgtcaggtta
tttatttatttattttattgtctcctgccttctgtcctggtggctgtttc
tcagctgcactctacacttgggggcccattgtcagttttctcttcaagcc
tcctggcttattctgcctgtcatgttctgccctcagtgtttccagcaagc
acgggctgggtcttcctagccacgctcactttgagcaaccccctcccgcc
ccccacctcataaccaggcctctcatgggtctttggcagagtgggcttgt
gtcctaaaggaagctaaggcttttgaagcctgggggggcgctttctccct
tcaggaacttccacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173165531_173166468
seq2: B6Ng01-303K18.b_47_991

seq1  GAATTCTAACCGGCCTCAATAGAACAGAGCGGCCGTTTACTGTCTTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCGGCCTCAATAGAACAGAGCGGCCGTTTACTGTCTTGGGC  50

seq1  CGCCGGGCTCCTTGTCTAGACAGGGCGAGCATTCAGATGGATTTGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGGCTCCTTGTCTAGACAGGGCGAGCATTCAGATGGATTTGGATTT  100

seq1  CCAGGCTGCAGCCGGCCCAGCAGCCCCTGGCGAGGCTCCCAGCTCGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCAGCCGGCCCAGCAGCCCCTGGCGAGGCTCCCAGCTCGGGGG  150

seq1  ATTCATTTACTTTGCATTCGTGAGCAGACGCCGCAGAGGTCCCAGTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTACTTTGCATTCGTGAGCAGACGCCGCAGAGGTCCCAGTTGTG  200

seq1  GGCCTATCACCGCCTCGCAGGGGGCCCCAGAGGCACTGGCTGGTGCGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATCACCGCCTCGCAGGGGGCCCCAGAGGCACTGGCTGGTGCGCTG  250

seq1  ACTTTTCCCAGACAATTTAGCTGCTTACAAGTCAATAAAAACAAGGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCCAGACAATTTAGCTGCTTACAAGTCAATAAAAACAAGGTTGC  300

seq1  TTGGGACGGGGGCTTCATCTTCTTCCAGCCGCACCGCTGTCAGAACGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACGGGGGCTTCATCTTCTTCCAGCCGCACCGCTGTCAGAACGCGT  350

seq1  GACTGCGCAACTGGGACCATTAAACTCCTAATTAGCTTTCAGAATCGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGCAACTGGGACCATTAAACTCCTAATTAGCTTTCAGAATCGGCG  400

seq1  GGCTGGGAGTGGAGAGGGAGCAAGGGACGGGCCCTGGCTGGCATCTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAGTGGAGAGGGAGCAAGGGACGGGCCCTGGCTGGCATCTCACC  450

seq1  GAGTGTCTTGTTTTATTTCTCTCTCGGCTGGAAGTGGAGAAGGTTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTTGTTTTATTTCTCTCTCGGCTGGAAGTGGAGAAGGTTCTGCT  500

seq1  GTCACTCACGGGCCAGTGTAGGAGAGTGCAGCTCCATTCCTTGTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCACGGGCCAGTGTAGGAGAGTGCAGCTCCATTCCTTGTTTTTTT  550

seq1  AAGCTGTGTGCCCTGTAGCCAGTTCCTCACCTCTCTGTGCCTCAGGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGCCCTGTAGCCAGTTCCTCACCTCTCTGTGCCTCAGGTTAC  600

seq1  TCTTGAAGATGAGCTCTGGCTGCCGGGGGTGGGGGAGTGGCAAGGGCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGATGAGCTCTGGCTGCCGGGGGTGGGGGAGTGGCAAGGGCGGC  650

seq1  ATTAGAGAAGGGTCAGATTATTTTAGAAGACTAAAGGGGAGTTACACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAAGGGTCAGATTATTTTAGAAGACTAAAGGGGAGTTACACAAG  700

seq1  GTTATTTTTTGAGGAAGGGTCTCTCACTGGCACCTGGGGCTTGCCTG-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTATTTTTTGAGGAAGGGTCTCTCACTGGCACCTGGGGCTTGCCTGTTT  750

seq1  TGGTTAAACTTGCTGATCAGTGAAATTCAGGGATTTGCCTGCCTGCCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAACTTGCTGATCAGTGAAATTCAGGGATTTGCCTGCCTGCCTGC  800

seq1  CTGCCTGACTGTTTAGGGTTTCTA-TTGCTGCGACAAAACACTATGACCA  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCCTGACTGTTTAGGGTTTCTATTTGCTGCGACAAAACACTATGACCA  850

seq1  GAGAGCAAG-TGAGGGAGGGAGGAAAGGGTTTATTCGGTAGACACTTG-T  896
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  GAGAGCAAGTTGAGGGAGGGAGGAAAGGGTTTATTCGGTAGACACTTGTT  900

seq1  GTTCA-TCATAAAGGGAAGTCAGGACAGG-AAAAGGAGC-CTGGA  938
      ||||| |||||| || ||||||| ||||| ||||||||| |||||
seq2  GTTCATTCATAAGGGAAAGTCAGTACAGGAAAAAGGAGCTCTGGA  945

seq1: chr2_173340726_173341825
seq2: B6Ng01-303K18.g_64_1180 (reverse)

seq1  GAGGTGGGAAGGTTTCCTG-AGGGAGAAAGCGCCCCC---AGCTTC-AAA  45
      ||||| |||||  |||||| |||||||||||||||||    ||||| |||
seq2  GAGGT-GGAAG--TTCCTGAAGGGAGAAAGCGCCCCCCCAGGCTTCAAAA  47

seq1  GCCCTCGCCTCCCTTA-GACAC-AGCCCCTTCTGCCAAGGCCCCATGAGA  93
      ||| | || ||| ||| ||||| |||||  |||||||| | |||||||||
seq2  GCCTTAGCTTCCTTTAGGACACAAGCCCACTCTGCCAAAGACCCATGAGA  97

seq1  GGCCTG--TATGAGGTGGGGGGCGGGGAGGGGTGGCTCAAAGTGAGCGTG  141
      ||||||  ||||||||||||||||||  ||||| ||||||||||||||||
seq2  GGCCTGGTTATGAGGTGGGGGGCGGGAGGGGGTTGCTCAAAGTGAGCGTG  147

seq1  GCTGGGA--GCCCAG-CCGTGCTTGCTGG-AACACTGAGGGCAG-ACATG  186
      ||| |||   ||||| ||||||||||||| |||||||||||||| |||||
seq2  GCTAGGAAGACCCAGCCCGTGCTTGCTGGAAACACTGAGGGCAGAACATG  197

seq1  ACA-GCAG-ATAAGCCA-GAGGCTTGAAGAG-AAACTGAC-ATTGGCCCC  231
      ||| |||| |||||||| ||||||||||||| |||||||| || ||||||
seq2  ACAGGCAGAATAAGCCAGGAGGCTTGAAGAGAAAACTGACAATGGGCCCC  247

seq1  CAAGTGTAGAGTGCAGCTGAGAAACAGCCACCAGGACAGAAGGCAGGAGA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAGAGTGCAGCTGAGAAACAGCCACCAGGACAGAAGGCAGGAGA  297

seq1  CAATAAAATAAATAAATAAATAACCTGACAAGACCTAAGTCAGAGGAGGC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATAAATAAATAAATAACCTGACAAGACCTAAGTCAGAGGAGGC  347

seq1  TGTCGTCAGGGCCTGTGACACATGTCCTGCTGACAGTGGCCCTG-CCCCA  380
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTCGTCAGGGCCTGTGACACATGTCCTGCTGACAGTGGCCCTGCCCCCA  397

seq1  CAATCCACCTCTATAAATAAATGACTTGGAAATGTCAGTTATTTGACAAT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCACCTCTATAAATAAATGACTTGGAAATGTCAGTTATTTGACAAT  447

seq1  TGTTCACACTGCTGGGCACTTGAAGATGACTGTCCCTTCCAAACCCAGAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACTGCTGGGCACTTGAAGATGACTGTCCCTTCCAAACCCAGAG  497

seq1  TGCCACTGCTGGAGGAGCAGTCAGACCACAAGCCGCCGCCACCCCGGAGG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGCTGGAGGAGCAGTCAGACCACAAGCCGCCGCCACCCCGGAGG  547

seq1  GAGACGCCTGAGGCTCTCTGTGTGCATCCTTTGGGGATGGAAAAACGAAT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCCTGAGGCTCTCTGTGTGCATCCTTTGGGGATGGAAAAACGAAT  597

seq1  GAAGTGCTAATGTGAATCCACACACAAGAGTGACAGAACCTCGGTCACCC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTAATGTGAATCCACACACAAGAGTGACAGAACCTCGGTCACCC  647

seq1  ACCCACCCCTGGAGAAGAGAAGAGGTCTCTCCAACACTGGGAGACAAAGG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCTGGAGAAGAGAAGAGGTCTCTCCAACACTGGGAGACAAAGG  697

seq1  GGAACACAAGAGTCAGCCTTTCTAATCATTGGGTGTTCATCTTGGTCTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAAGAGTCAGCCTTTCTAATCATTGGGTGTTCATCTTGGTCTTT  747

seq1  GGATTCAGCTCTCTGCTGCGGTCGGGGGGGGGGGGGGTCTATGGGTTTGG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGCTCTCTGCTGCGGTCGGGGGGGGGGGGGGTCTATGGGTTTGG  797

seq1  TCATGCATGGCAGAGGTTAAGTTTTCAGTTGTGTTTCCTGCTCACGGTAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGGCAGAGGTTAAGTTTTCAGTTGTGTTTCCTGCTCACGGTAG  847

seq1  TGCAAGAGGTTTCTGGAGAAGGGTGGGGGGAGAAGCAATATGAAGCCAAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGGTTTCTGGAGAAGGGTGGGGGGAGAAGCAATATGAAGCCAAT  897

seq1  GAAGGACTCTGGCTGTTTTTCCGCTCGGGACTTTAAAAAAAAACATTTAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTCTGGCTGTTTTTCCGCTCGGGACTTTAAAAAAAAACATTTAG  947

seq1  TGTCCAAGTGACTTGACATACCCAGTCCCTCACAATATTTGCGTAGAACT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGTGACTTGACATACCCAGTCCCTCACAATATTTGCGTAGAACT  997

seq1  CTGGGATCAAAACATAATTTCAAAATAATATATTTTTCTGACATCCCCTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCAAAACATAATTTCAAAATAATATATTTTTCTGACATCCCCTA  1047

seq1  AGAAAAAAATAATTACTAGTTTCTTCCCTCTAAAAGGATTTAGATGGAAT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATAATTACTAGTTTCTTCCCTCTAAAAGGATTTAGATGGAAT  1097

seq1  AACATCTGCGCTGAGAATTC  1100
      ||||||||||||||||||||
seq2  AACATCTGCGCTGAGAATTC  1117