BAC Information

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BAC

Clone NameB6Ng01-304F01
Chromosome2 (Build37)
Map Location 126,054,933 - 126,224,634
singlet/doubletdoublet
Overlap geneAtp8b4
Upstream geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304F01.bB6Ng01-304F01.g
ACCGA097903GA097904
length1,189988
definitionB6Ng01-304F01.b B6Ng01-304F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,223,442 - 126,224,634)(126,054,933 - 126,055,916)
sequence
gaattcagctaagtatctgataatgtgagacacacacacacacatacaca
cacacacacacacacacacacacacacacacacacacacacaggacttta
aagttttttttttttagatcagcaataattaaaaaacctagcctatcaat
aacaaacatgatgtccaggaacaaatctgtcctgctgtggtatggaacta
tataaaaataaagcaaaactgaatatgttacaatataatacctttaaaat
gggatttctgggaaaaaaccatattcttatcattgaggctgcccttaatt
ttatgaaatacagtttttttccaagcagttaatacaatagaagcctaaga
aaatcccttaataaatttctatgaaaactgatacctcacattgcaataat
cttttgggcaccccatttggcatcatagatgacagacatttggacttagt
cctttggccacagacttcccctttctggagtttgaatgtataatccatta
ctgcacaaagactgcactcttcctagtagacggacagtgacaaactgttt
ttagccaggattgatcacggtttgtttactgcttagtggagacttattgc
tgacttcttttgaaagtaaaaccagatcaatgtctcaggacacatttctt
ccaactagatatatgccaaatatcttccaactagatatatgccaaatatc
ttccaactagatatatgccaaatatcttccaactagatatatgccaaata
tcttcagtaaggaaccatttactctgcgatgcagattgagtttcaagtga
atgtgccacagaaaacactctactgggcttttttaatagagagaaccgca
tgcccttgcctgaggctttctgatgagccagccatatcactttatgatgc
tgaaaggaaataccttgggcaccaaaggtttatgggcagattttcagtgg
aggcatttctgaagattgctaggacctaaaggacaaagcacttatatatt
tttgtttttaaaagtcttgaggatttggcaaagcttgcgtgtcatgtatg
aacaggttctctctgtctttctcttctcttttcatgtaattgaccacagt
gtggaagttatccgtctgacacaagttattttataactggaacggtaagt
tatatgcttcgaaagccaatggcctgcctgaaaccccgg
gaattctgcagacttctcagagagtgtatatttagaaccccgagaggcag
ggggtgggagtcaggtgttgttgttggttactgttggtcactgttttgtt
aagtagtcatgtgcaaagaatcaacaataagaagaaattagatatcctaa
cagtgaagatcaaacttgccccagggatctccatgcccctaatcaacagg
aggtagtctaacaaaattgtcacccccttttccctctatctttttctctc
tcatatcttgtgttagggatttgaaagggtggagaagaatggaagaaaaa
cgaacccacaaagtagccagaattgggctacagggatatggtaagtagaa
ggtactgaggagaaagttaagaatatgggaaaggatgtgccttgcataca
catttctcttatgttcccacagacaccttagaattatgtaagtggcactt
taaaggtccaaatgtaagacttttcccaaggtatcaagtgtcagcaaggt
ttgaaggataccaccttcagattcttgtgatatacatctcaatgttactc
agcttcagccatcagaaaatctttttcttacaaaactttcatggtctacc
ttattgatcttcttagccaagaatactatttagcaggaaaagcagattaa
agaaaaaggtctcccagatgtgaggccaacaaggtaagccctcttccatg
ccagcacttcaccgggaagccttattttctcgaagtagcttcagtttctt
gtgtccaagaccctgacttttcttgacctttgtcgtattttcagctttgg
aatcctcatatcatctgaaaatatacacacacaaagaaagccaactttca
atctggtgccttccagttagagaagcttgtgagagccagcagaggatgag
ggcttcttgagacttgttagtgtcagggtgtgctgaatatcctggggtgt
gggccaagatcagccaaaaatcccaattgtccaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126223442_126224634
seq2: B6Ng01-304F01.b_44_1232 (reverse)

seq1  -CCGGGCTTCA-GCAGG-CATT-GCTTTCGAAGCATAATACATCTTCCGG  46
       | ||| |||| ||||| |||| |||||||||||   ||| | ||| | |
seq2  CCGGGGTTTCAGGCAGGCCATTGGCTTTCGAAGC---ATATAACTTACCG  47

seq1  TCCCAGTTTATAAAATAACTGTGTCCCAGACGGATTACTTCCACACTGTG  96
      | |||| ||||||||||||| |||  ||||||||| ||||||||||||||
seq2  TTCCAG-TTATAAAATAACT-TGTGTCAGACGGATAACTTCCACACTGTG  95

seq1  GTCCATTAACATG-AAAGAGAAGAAGAAAGGACAGAGAGAACCTGTCAAT  145
      ||| ||| ||||| ||||||||| ||||| ||||||||||||||||  ||
seq2  GTCAATT-ACATGAAAAGAGAAG-AGAAA-GACAGAGAGAACCTGTTCAT  142

seq1  ACATGAACACGCAAAGCTTTGCCAAAATCCTCAAGACTTTTAAAAACAAA  195
      ||||| |||||| |||||||||| ||||||||||||||||||||||||||
seq2  ACATG-ACACGC-AAGCTTTGCC-AAATCCTCAAGACTTTTAAAAACAAA  189

seq1  AATATATAAGTGCTTTGTCC-TTAGGTCCTAGCAATCTTCAGAAATGCCT  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATATATAAGTGCTTTGTCCTTTAGGTCCTAGCAATCTTCAGAAATGCCT  239

seq1  CCACTGAAAATCTGCCCATAAACC-TTGGTGCCCAAGGTATTTCCTTTCA  293
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACTGAAAATCTGCCCATAAACCTTTGGTGCCCAAGGTATTTCCTTTCA  289

seq1  GCATCATAAAGTGATATGGCTGGCTCATCAGAAAGCCTCAGGCAAGGGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCATCATAAAGTGATATGGCTGGCTCATCAGAAAGCCTCAGGCAAGGGCA  339

seq1  TGCGGTTCTCTCTATTAAAAAAGCCCAGTAGAGTGTTTTCTGTGGCACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTTCTCTCTATTAAAAAAGCCCAGTAGAGTGTTTTCTGTGGCACAT  389

seq1  TCACTTGAAACTCAATCTGCATCGCAGAGTAAATGGTTCCTTACTGAAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAAACTCAATCTGCATCGCAGAGTAAATGGTTCCTTACTGAAGA  439

seq1  TATTTGGCATATATCTAGTTGGAAGATATTTGGCATATATCTAGTTGGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCATATATCTAGTTGGAAGATATTTGGCATATATCTAGTTGGAA  489

seq1  GATATTTGGCATATATCTAGTTGGAAGATATTTGGCATATATCTAGTTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGGCATATATCTAGTTGGAAGATATTTGGCATATATCTAGTTGG  539

seq1  AAGAAATGTGTCCTGAGACATTGATCTGGTTTTACTTTCAAAAGAAGTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTGTCCTGAGACATTGATCTGGTTTTACTTTCAAAAGAAGTCA  589

seq1  GCAATAAGTCTCCACTAAGCAGTAAACAAACCGTGATCAATCCTGGCTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGTCTCCACTAAGCAGTAAACAAACCGTGATCAATCCTGGCTAA  639

seq1  AAACAGTTTGTCACTGTCCGTCTACTAGGAAGAGTGCAGTCTTTGTGCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTGTCACTGTCCGTCTACTAGGAAGAGTGCAGTCTTTGTGCAG  689

seq1  TAATGGATTATACATTCAAACTCCAGAAAGGGGAAGTCTGTGGCCAAAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATTATACATTCAAACTCCAGAAAGGGGAAGTCTGTGGCCAAAGG  739

seq1  ACTAAGTCCAAATGTCTGTCATCTATGATGCCAAATGGGGTGCCCAAAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCCAAATGTCTGTCATCTATGATGCCAAATGGGGTGCCCAAAAG  789

seq1  ATTATTGCAATGTGAGGTATCAGTTTTCATAGAAATTTATTAAGGGATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCAATGTGAGGTATCAGTTTTCATAGAAATTTATTAAGGGATTT  839

seq1  TCTTAGGCTTCTATTGTATTAACTGCTTGGAAAAAAACTGTATTTCATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCTTCTATTGTATTAACTGCTTGGAAAAAAACTGTATTTCATAA  889

seq1  AATTAAGGGCAGCCTCAATGATAAGAATATGGTTTTTTCCCAGAAATCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGGCAGCCTCAATGATAAGAATATGGTTTTTTCCCAGAAATCCC  939

seq1  ATTTTAAAGGTATTATATTGTAACATATTCAGTTTTGCTTTATTTTTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGGTATTATATTGTAACATATTCAGTTTTGCTTTATTTTTATA  989

seq1  TAGTTCCATACCACAGCAGGACAGATTTGTTCCTGGACATCATGTTTGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCATACCACAGCAGGACAGATTTGTTCCTGGACATCATGTTTGTT  1039

seq1  ATTGATAGGCTAGGTTTTTTAATTATTGCTGATCTAAAAAAAAAAAACTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGGCTAGGTTTTTTAATTATTGCTGATCTAAAAAAAAAAAACTT  1089

seq1  TAAAGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1139

seq1  TGTGTATGTGTGTGTGTGTGTCTCACATTATCAGATACTTAGCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTGTGTGTGTCTCACATTATCAGATACTTAGCTGAATTC  1189

seq1: chr2_126054933_126055916
seq2: B6Ng01-304F01.g_67_1054

seq1  GAATTCTGCAGACTTCTCAGAGAGTGTATATTTAGAACCCCGAGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGACTTCTCAGAGAGTGTATATTTAGAACCCCGAGAGGCAG  50

seq1  GGGGTGGGAGTCAGGTGTTGTTGTTGGTTACTGTTGGTCACTGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGAGTCAGGTGTTGTTGTTGGTTACTGTTGGTCACTGTTTTGTT  100

seq1  AAGTAGTCATGTGCAAAGAATCAACAATAAGAAGAAATTAGATATCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCATGTGCAAAGAATCAACAATAAGAAGAAATTAGATATCCTAA  150

seq1  CAGTGAAGATCAAACTTGCCCCAGGGATCTCCATGCCCCTAATCAACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGATCAAACTTGCCCCAGGGATCTCCATGCCCCTAATCAACAGG  200

seq1  AGGTAGTCTAACAAAATTGTCACCCCCTTTTCCCTCTATCTTTTTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCTAACAAAATTGTCACCCCCTTTTCCCTCTATCTTTTTCTCTC  250

seq1  TCATATCTTGTGTTAGGGATTTGAAAGGGTGGAGAAGAATGGAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTGTGTTAGGGATTTGAAAGGGTGGAGAAGAATGGAAGAAAAA  300

seq1  CGAACCCACAAAGTAGCCAGAATTGGGCTACAGGGATATGGTAAGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCCACAAAGTAGCCAGAATTGGGCTACAGGGATATGGTAAGTAGAA  350

seq1  GGTACTGAGGAGAAAGTTAAGAATATGGGAAAGGATGTGCCTTGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAGGAGAAAGTTAAGAATATGGGAAAGGATGTGCCTTGCATACA  400

seq1  CATTTCTCTTATGTTCCCACAGACACCTTAGAATTATGTAAGTGGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTTATGTTCCCACAGACACCTTAGAATTATGTAAGTGGCACTT  450

seq1  TAAAGGTCCAAATGTAAGACTTTTCCCAAGGTATCAAGTGTCAGCAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTCCAAATGTAAGACTTTTCCCAAGGTATCAAGTGTCAGCAAGGT  500

seq1  TTGAAGGATACCACCTTCAGATTCTTGTGATATACATCTCAATGTTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGATACCACCTTCAGATTCTTGTGATATACATCTCAATGTTACTC  550

seq1  AGCTTCAGCCATCAGAAAATCTTTTTCTTACAAAACTTTCATGGTCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGCCATCAGAAAATCTTTTTCTTACAAAACTTTCATGGTCTACC  600

seq1  TTATTGATCTTCTTAGCCAAGAATACTATTTAGCAGGAAAAGCAGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATCTTCTTAGCCAAGAATACTATTTAGCAGGAAAAGCAGATTAA  650

seq1  AGAAAAAGGTCTCCCAGATGTGAGGCCAACAAGGTAAGCCCTCTTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGTCTCCCAGATGTGAGGCCAACAAGGTAAGCCCTCTTCCATG  700

seq1  CCAGCACTTCACCGGGAAGCCTTA-TTTCTCGAAGTAGCTTCAGTTTCTT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGCACTTCACCGGGAAGCCTTATTTTCTCGAAGTAGCTTCAGTTTCTT  750

seq1  GTGTCCAAGACCCTGACTTTTCTTGACCTTTGTCGTATTTTCAGCTTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAGACCCTGACTTTTCTTGACCTTTGTCGTATTTTCAGCTTTGG  800

seq1  AATCCTCATATCATCTGAAAATATACACACACAAAGAAAGCCAACTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCATATCATCTGAAAATATACACACACAAAGAAAGCCAACTTTCA  850

seq1  ATCTGGTGCCTTCCAGTAAGAGAAGCTTGTGAGAGCCAGCAGAGGATGAG  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTGGTGCCTTCCAGTTAGAGAAGCTTGTGAGAGCCAGCAGAGGATGAG  900

seq1  GGCTTCTTGAGACTTGTTAGTGTCAGGGTGTGGCTG-ATATTCTGGGGTG  948
      ||||||||||||||||||||||||||||||| |||| |||| ||||||||
seq2  GGCTTCTTGAGACTTGTTAGTGTCAGGGTGT-GCTGAATATCCTGGGGTG  949

seq1  TGG--CCAGATCAGCCAAAAATCCCAA-TGTCCAAAGTG  984
      |||  | |||||||||||||||||||| |||||||||||
seq2  TGGGCCAAGATCAGCCAAAAATCCCAATTGTCCAAAGTG  988