BAC Information

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BAC

Clone NameB6Ng01-305I10
Chromosome2 (Build37)
Map Location 19,999,741 - 20,208,276
singlet/doubletdoublet
Overlap geneLOC667609
Upstream geneLOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
Downstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I10.bB6Ng01-305I10.g
ACCGA098795GA098796
length1,1971,103
definitionB6Ng01-305I10.b B6Ng01-305I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,999,741 - 20,000,936)(20,207,170 - 20,208,276)
sequence
gaattcacagatgtaaactctttgaccaatagagcaataaccagttttta
aatttattttcatttttatcggtctttaagttcactttcaaagcaaaggg
tgtctcttattatacttttataaactaagcatacaaaggaagtttttaac
tgtatctgtcttgtaacttgttcttgggtcttcttccccactcacttttc
atgtctccctgccactctcttaattgcctctctgccctgtaatagtcccc
attctgcttgcacagcacaggtattcctcccctcaccttagggcttctgc
cttactcacggtggcacttacctacgcacacaaagacagcctgatattca
ggttttgtatacaatagaaaacatgttatattgtcttcctgagtccaata
tgtttcactcaacgtaaagacttccagtgctatccattttcctgcaaatg
tcagaatatcagttttcttcatggttcaacaaaattccgttgtgtacatg
tacctctgtttgttgcattgatagacatgttggctggttccatgccctgg
ctatggtgaacatcacagcattaaacatgtatgtgtatgtatcttgttgg
taaaatactctaggtattacatagttctttttgttccccagtgatttcca
tgttgatttgcacagtggctgcaccaatttagattcctatctgtagaaac
aggtttcctcctcacctgcatcctcacctgtagcctcacctgcagcctca
cctgtagcctcacctgtagcctcacctgcatcctcacttgcatccgggcc
agcacatttgttgtttgtacatttgttccccattccttttatgttttggt
ttttgtttgcttttacctaggtaggacttctctgtgtagcactggttgtc
ctagaactcactctgtagaccaggctggcctgggaactcagagatttgcc
tgcctctgcctccccagtgctggaattaaagatgtgcaccaaccaatgcc
tgactcataatttgattttctcaataacaacattttttgatctgagagcg
atggaatatcaaaacagttaatttccagttcaccaatgggcttagatgtt
taacatggtcctcaaattcacctgaaatggtaatcctcttgagaggacta
ttctgttgcggtcagtagtcatcattaattgaatagaccattttggc
gaattcagactcactggggcacagaattgagaagcacaataatttcccaa
tacagttttattaaattttatctaaacaggggtaactttggttatgttac
taaatatggtcaagtagaagcccacaaaaggttgtgtttgaatgtgtgac
taagaacatgtgccatgcatattcagttgtttaaagaacttaggtaaagc
acttggtttaaacaaacaaaaaacaaaaccaaatcaaccaaccaataaca
acaacaaaacccccaaagcgacaacaacccccccccttttctttaaataa
aactaaagagcctgaaatggtttgaatattgtcacccagtttatgggatt
gagagagaaagttgatacatattaacaagtcaacagaactctaaattatt
gttaacaaaccagacaatctcgaaataaaagaactatgcaactaccgagt
ataaattaatgaatttttaaattgcaaattactgtattagccaaattact
gaaatagcctgtgattcaaaacaacaagccagccattagaatgttatccc
atgacaacataatctttatgggaaaagcagttgtaaaattcacctttaaa
aatgataccattggccgggcagtggtggcacacacctttaatcccagcac
tttggaggcatatacaggcagatttctcagtttgaggccagcctggtcta
cagagtgagttacaggacagccaaggctacacagagaaaccctgtctcga
aaaaccaaaaaaaaaaaaattgtgtattagttatatgtttaatgggtttc
ataaatatattcaatttcaaagcatatcacatcctttggctctccattgc
catcttttccccctttcctttccactgttccccctcttctaaaatactct
catttttgtttcttgttatacactttatccagtgtctcagtttttatcca
ctgtcttgaaatgacataatcattcatgtattatggtttgattaaactat
aatgatataggcaacattctctatatcctatgcatgggcccatgatgaac
atctagctatctatttttattaaccatctttccagtatgtacttgttcct
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_19999741_20000936
seq2: B6Ng01-305I10.b_45_1241

seq1  GAATTCACAGATGTAAACTCTTTGACCAATAGAG-AATAACCAGTTTTTA  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCACAGATGTAAACTCTTTGACCAATAGAGCAATAACCAGTTTTTA  50

seq1  AATTTATTTTCATTTTTATCGGTCTTTAAGTTCACTTTCAAAGCAAAGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTCATTTTTATCGGTCTTTAAGTTCACTTTCAAAGCAAAGGG  100

seq1  TGTCTCTTATTATACTTTTATAAACTAAGCATACAAAGGAAGTTTTTAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTATTATACTTTTATAAACTAAGCATACAAAGGAAGTTTTTAAC  150

seq1  TGTATCTGTCTTGTAACTTGTTCTTGGGTCTTCTTCCCCACTCACTTTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTCTTGTAACTTGTTCTTGGGTCTTCTTCCCCACTCACTTTTC  200

seq1  ATGTCTCCCTGCCACTCTCTTAATTGCCTCTCTGCCCTGTAATAGTCCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCCTGCCACTCTCTTAATTGCCTCTCTGCCCTGTAATAGTCCCC  250

seq1  ATTCTGCTTGCACAGCACAGGTATTCCTCCCCTCACCTTAGGGCTTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTTGCACAGCACAGGTATTCCTCCCCTCACCTTAGGGCTTCTGC  300

seq1  CTTACTCACGGTGGCACTTACCTACGCACACAAAGACAGCCTGATATTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCACGGTGGCACTTACCTACGCACACAAAGACAGCCTGATATTCA  350

seq1  GGTTTTGTATACAATAGAAAACATGTTATATTGTCTTCCTGAGTCCAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTATACAATAGAAAACATGTTATATTGTCTTCCTGAGTCCAATA  400

seq1  TGTTTCACTCAACGTAAAGACTTCCAGTGCTATCCATTTTCCTGCAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACTCAACGTAAAGACTTCCAGTGCTATCCATTTTCCTGCAAATG  450

seq1  TCAGAATATCAGTTTTCTTCATGGTTCAACAAAATTCCGTTGTGTACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATCAGTTTTCTTCATGGTTCAACAAAATTCCGTTGTGTACATG  500

seq1  TACCTCTGTTTGTTGCATTGATAGACATGTTGGCTGGTTCCATGCCCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTTTGTTGCATTGATAGACATGTTGGCTGGTTCCATGCCCTGG  550

seq1  CTATGGTGAACATCACAGCATTAAACATGTATGTGTATGTATCTTGTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGAACATCACAGCATTAAACATGTATGTGTATGTATCTTGTTGG  600

seq1  TAAAATACTCTAGGTATTACATAGTTCTTTTTGTTCCCCAGTGATTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTCTAGGTATTACATAGTTCTTTTTGTTCCCCAGTGATTTCCA  650

seq1  TGTTGATTTGCACAGTGGCTGCACCAATTTAGATTCCTATCTGTAGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTTGCACAGTGGCTGCACCAATTTAGATTCCTATCTGTAGAAAC  700

seq1  AGGTTTCCTCCTCACCTGCATCCTCACCTGTAGCCTCACCTGCAGCCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCTCCTCACCTGCATCCTCACCTGTAGCCTCACCTGCAGCCTCA  750

seq1  CCTGTAGCCTCACCTGTAGCCTCACCTGCATCCTCACTTGCATCCGGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCCTCACCTGTAGCCTCACCTGCATCCTCACTTGCATCCGGGCC  800

seq1  AGCACATTTGTTGTTTGTACATTTGTTCCCCATTCCTTTTATGTTTTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTGTTGTTTGTACATTTGTTCCCCATTCCTTTTATGTTTTGGT  850

seq1  TTTTGTTTGCTTTTACCTAGGTAGGACTTCTCTGTGTAGCACTGGTTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGCTTTTACCTAGGTAGGACTTCTCTGTGTAGCACTGGTTGTC  900

seq1  CTAGAACTCACTCTGTAGACCAGGCTGGCCT-GGAACTCAGAGATTTGCC  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAGAACTCACTCTGTAGACCAGGCTGGCCTGGGAACTCAGAGATTTGCC  950

seq1  TGCCTCTGCCTCCCCAGTGCTGGAATTAAAGATGTGCACCAACCAATGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCCAGTGCTGGAATTAAAGATGTGCACCAACCAATGCC  1000

seq1  TGACTCATAA-TTGATTTTCTCAATAACAACA-TTTTTGATCTGAGAGCG  1046
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TGACTCATAATTTGATTTTCTCAATAACAACATTTTTTGATCTGAGAGCG  1050

seq1  ATGGAATATCAAAACAGTTTAATTTCCAGTTCACCAAT-GGCTAAGAATG  1095
      ||||||||||||||||| |||||||||||||||||||| |||| || |||
seq2  ATGGAATATCAAAACAG-TTAATTTCCAGTTCACCAATGGGCTTAG-ATG  1098

seq1  TTAAACAT-GTCCTCAAATATTCA-CTGAATATTGTATTTCTTCTTTTGA  1143
      || ||||| ||||||||  ||||| ||||| || |||  || ||||  ||
seq2  TTTAACATGGTCCTCAA--ATTCACCTGAA-ATGGTA-ATCCTCTTGAGA  1144

seq1  GGACTA-TCTGTGCGGGTCAGTAGTCAATCATTTATTGATTAGACAATTT  1192
      |||||| |||||   ||||||||||| |||||| ||||| ||||| ||||
seq2  GGACTATTCTGTTGCGGTCAGTAGTC-ATCATTAATTGAATAGACCATTT  1193

seq1  TGGC  1196
      ||||
seq2  TGGC  1197

seq1: chr2_20207170_20208276
seq2: B6Ng01-305I10.g_71_1173 (reverse)

seq1  TTGAGGAACAAGGTTACATAACTTGGGAAAGATTGTT-ATAAAAATAGAT  49
      ||||||||||||  ||||| |||  |||||||| ||| ||||||||||| 
seq2  TTGAGGAACAAG--TACAT-ACT--GGAAAGATGGTTAATAAAAATAGA-  44

seq1  TAGCTTAGATGTCCATCAATGGGCCCATGCATAGGATATAGAGAATGTTG  99
      |||| ||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TAGC-TAGATGTTCATC-ATGGGCCCATGCATAGGATATAGAGAATGTTG  92

seq1  CCTATATTCATTATAGTTTTATTCAACCAT-ATACATGAATGAATTATGT  148
      |||||| |||||||||||| ||  |||||| ||||||||||| |||||||
seq2  CCTATA-TCATTATAGTTTAATCAAACCATAATACATGAATG-ATTATGT  140

seq1  CATTTTCAAGACAGTGGATAAAACTGGAGACCACTGGAT-AAGTGTATAA  197
      || ||||||||||||||||||||   |||| |||||||| ||||||||||
seq2  CA-TTTCAAGACAGTGGATAAAAACTGAGA-CACTGGATAAAGTGTATAA  188

seq1  CAAGAAAACAAAAATGAGAGTATTTTAGAAGAGGGGGAACAGTGG-AAGG  246
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAG-AAACAAAAATGAGAGTATTTTAGAAGAGGGGGAACAGTGGAAAGG  237

seq1  AAAGGGGG-AAAGATGGCAATGGAGAGCCAAAGGATGTGATATGC-TTGA  294
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGGGGGAAAAGATGGCAATGGAGAGCCAAAGGATGTGATATGCTTTGA  287

seq1  A--TGAATATA-TTATGAAACCCATTAAACATATAACTAATACACAATTT  341
      |  |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATATATTTATGAAACCCATTAAACATATAACTAATACACAATTT  337

seq1  TTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGT  387

seq1  CCTGTAACTCACTCTGTAGACCAGGCTGGCCTCAAACTGAGAAATCTGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTCACTCTGTAGACCAGGCTGGCCTCAAACTGAGAAATCTGCC  437

seq1  TGTATATGCCTCCAAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCCTCCAAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCC  487

seq1  GGCCAATGGTATCATTTTTAAAGGTGAATTTTACAACTGCTTTTCCCATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATGGTATCATTTTTAAAGGTGAATTTTACAACTGCTTTTCCCATA  537

seq1  AAGATTATGTTGTCATGGGATAACATTCTAATGGCTGGCTTGTTGTTTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATGTTGTCATGGGATAACATTCTAATGGCTGGCTTGTTGTTTTG  587

seq1  AATCACAGGCTATTTCAGTAATTTGGCTAATACAGTAATTTGCAATTTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGGCTATTTCAGTAATTTGGCTAATACAGTAATTTGCAATTTAA  637

seq1  AAATTCATTAATTTATACTCGGTAGTTGCATAGTTCTTTTATTTCGAGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTAATTTATACTCGGTAGTTGCATAGTTCTTTTATTTCGAGAT  687

seq1  TGTCTGGTTTGTTAACAATAATTTAGAGTTCTGTTGACTTGTTAATATGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTTGTTAACAATAATTTAGAGTTCTGTTGACTTGTTAATATGT  737

seq1  ATCAACTTTCTCTCTCAATCCCATAAACTGGGTGACAATATTCAAACCAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTTCTCTCTCAATCCCATAAACTGGGTGACAATATTCAAACCAT  787

seq1  TTCAGGCTCTTTAGTTTTATTTAAAGAAAAGGGGGGGGGTTGTTGTCGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCTTTAGTTTTATTTAAAGAAAAGGGGGGGGGTTGTTGTCGCT  837

seq1  TTGGGGGTTTTGTTGTTGTTATTGGTTGGTTGATTTGGTTTTGTTTTTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTTTGTTGTTGTTATTGGTTGGTTGATTTGGTTTTGTTTTTTG  887

seq1  TTTGTTTAAACCAAGTGCTTTACCTAAGTTCTTTAAACAACTGAATATGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAACCAAGTGCTTTACCTAAGTTCTTTAAACAACTGAATATGC  937

seq1  ATGGCACATGTTCTTAGTCACACATTCAAACACAACCTTTTGTGGGCTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATGTTCTTAGTCACACATTCAAACACAACCTTTTGTGGGCTTC  987

seq1  TACTTGACCATATTTAGTAACATAACCAAAGTTACCCCTGTTTAGATAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACCATATTTAGTAACATAACCAAAGTTACCCCTGTTTAGATAAA  1037

seq1  ATTTAATAAAACTGTATTGGGAAATTATTGTGCTTCTCAATTCTGTGCCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAAACTGTATTGGGAAATTATTGTGCTTCTCAATTCTGTGCCC  1087

seq1  CAGTGAGTCTGAATTC  1107
      ||||||||||||||||
seq2  CAGTGAGTCTGAATTC  1103