BAC Information

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BAC

Clone NameB6Ng01-306J02
Chromosome2 (Build37)
Map Location 120,205,779 - 120,361,061
singlet/doubletdoublet
Overlap geneTmem87a, Ganc, Capn3, Zfp106
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306J02.bB6Ng01-306J02.g
ACCGA099567GA099568
length1,129948
definitionB6Ng01-306J02.b B6Ng01-306J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,205,779 - 120,206,891)(120,360,115 - 120,361,061)
sequence
gaattcagtgataaagtgaagacagcagtgcagacaacagagacctgaca
agtcatgactcaagaaacacaactgaagaggaaaactactaaaggcaagg
gagagagagggatcatgaacacaagtctgcaaacagacaaggtcctcagc
acaggcttatgcggtctgcacactcatataaagatgatgatacatgcttc
agtcactgtgagcgggcccagagctgggtatccactgttctagagcccaa
atgtatgctgtgagggggctactgagattctccaggccacaagtcatgac
aatttcatcctacagataaaggggtcccacaggactacatacactctctc
aaggtcactgtctaataagaagttaggggctggggaggtgtctcagtggt
taggaacaactgttgctcttgcagaggacctggactgagttcccagcatg
cacataggggctcacaataaccttaactgtagttcaaggggatccaatga
ctttgtctaatctctgccggcacgaggttctcatatagtacacaatcgga
acaggcaaaacacttacacccctaatgtaaaataagaaaatctaatttaa
aaagttaacaccaaaacctcaagtagcattttctgaatggcactgggata
atccttgatactgctacaaaacagacaatttcatattaatttactgacaa
ggttaaaaagacatgttgacttacaatcatcagtgggtagtcttcaagag
taaggtattcatagggaccctttacttcaacagtcactggcaaaacacag
atctcaattaatttgatagattcagtaatcaaataaaacccaattagtgt
ttattttatgaaattagtaaaagtttcatcactcacttttaagtacttca
atcatgggtgggaaaatgcattagatataggtaacctttggaaaatgatg
acttaattcttacagttgttgatttggctggatgggattttttccaggac
tcaggtccccctcatcatcacacccctgttagcactgactgtaagcacag
gctggacctccctcagcctccccattcacagtcctggtaaaagactatcc
tctactggcacctgcatcacaaaagccat
gaattccagttggcattctgaaggaacaggtggctttcccagctggcaca
tgaacaacagtaacggaaactggaaatccagtgtacgtagtacgaatagc
tggaattacaatggccctggagacaaatttcaacaaggcagaaacagaaa
tcctaactatcaaatggaagacatgaccaagatgtggaacaagaaatcta
ataagccaagcaagtacagtcaggagagatgcaagtggcagaggcaagac
agggacaaagctgccaagtacaggagtcctcctgagggatacgcaagcga
tacgtttccttcagaaggcttacttgagttcaattttgaacagcgagaaa
gtcaaaccactaaacaaacagacacggcagcctcaaaaattaatggaaaa
aatggcaccaaagcaagggacaagttccgccgctggacaccttacccttc
ccagaagactctagatttacagtcagccctgaaagaagtcattggcagca
agtcagacacactagagaagcctctctttaattttagcttaataactgca
ggactgcgcaaaccagttgataaaacaagtaatcctccagtgataaaaac
acaaaaagcaggacctcctggatctcccagtcacaaagccatttctgatg
gcactgctttctgtgaggtgcccaggagcttgctccattaccgagcatct
gagccacatcagaagtcaaataagaattccattactgaaatccccactct
tccacttccaaccccttaatcaagtcctcatagcaattaaagaccgctcc
aaaaataggagagacaagtcctttccttctggagaatcaccttcacactt
ctcttgaaacacttctaactttagagaagccatgggttctctctcacaca
ttccaaatcacgcggattatgtgtcctcggtttaagggaataaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120205779_120206891
seq2: B6Ng01-306J02.b_46_1174

seq1  GAATTCAGTGATAAAGTGAAGACAGCAGTGCAGACAACAGAGACCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATAAAGTGAAGACAGCAGTGCAGACAACAGAGACCTGACA  50

seq1  AGTCATGACTCAAGAAACACAACTGAAGAGGAAAACTACTAAAGGCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACTCAAGAAACACAACTGAAGAGGAAAACTACTAAAGGCAAGG  100

seq1  GAGAGAGAGGGATCATGAACACAAGTCTGCAAACAGACAAGGTCCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGGATCATGAACACAAGTCTGCAAACAGACAAGGTCCTCAGC  150

seq1  ACAGGCTTATGCGGTCTGCACACTCATATAAAGATGATGATACATGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTATGCGGTCTGCACACTCATATAAAGATGATGATACATGCTTC  200

seq1  AGTCACTGTGAGCGGGCCCAGAGCTGGGTATCCACTGTTCTAGAGCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTGAGCGGGCCCAGAGCTGGGTATCCACTGTTCTAGAGCCCAA  250

seq1  ATGTATGCTGTGAGGGGGCTACTGAGATTCTCCAGGCCACAAGTCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTGTGAGGGGGCTACTGAGATTCTCCAGGCCACAAGTCATGAC  300

seq1  AATTTCATCCTACAGATAAAGGGGTCCCACAGGACTACATACACTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCCTACAGATAAAGGGGTCCCACAGGACTACATACACTCTCTC  350

seq1  AAGGTCACTGTCTAATAAGAAGTTAGGGGCTGGGGAGGTGTCTCAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACTGTCTAATAAGAAGTTAGGGGCTGGGGAGGTGTCTCAGTGGT  400

seq1  TAGGAACAACTGTTGCTCTTGCAGAGGACCTGGACTGAGTTCCCAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACAACTGTTGCTCTTGCAGAGGACCTGGACTGAGTTCCCAGCATG  450

seq1  CACATAGGGGCTCACAATAACCTTAACTGTAGTTCAAGGGGATCCAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGGGCTCACAATAACCTTAACTGTAGTTCAAGGGGATCCAATGA  500

seq1  CTTTGTCTAATCTCTGCCGGCACGAGGTTCTCATATAGTACACAATCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAATCTCTGCCGGCACGAGGTTCTCATATAGTACACAATCGGA  550

seq1  ACAGGCAAAACACTTACACCCCTAATGTAAAATAAGAAAATCTAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAACACTTACACCCCTAATGTAAAATAAGAAAATCTAATTTAA  600

seq1  AAAGTTAACACCAAAACCTCAAGTAGCATTTTCTGAATGGCACTGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACACCAAAACCTCAAGTAGCATTTTCTGAATGGCACTGGGATA  650

seq1  ATCCTTGATACTGCTACAAAACAGACAATTTCATATTAATTTACTGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGATACTGCTACAAAACAGACAATTTCATATTAATTTACTGACAA  700

seq1  GGTTAAAAAGACATGTTGACTTACAATCATCAGTGGGTAGTCTTCAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAAGACATGTTGACTTACAATCATCAGTGGGTAGTCTTCAAGAG  750

seq1  TAAGGTATTCATAGGGACCCTTTACTTCAACAGTCACTGGCAAAACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATTCATAGGGACCCTTTACTTCAACAGTCACTGGCAAAACACAG  800

seq1  ATCTCAATTAATTTGATAGATTCAGTAATCAAATAAAACCCAATTAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTAATTTGATAGATTCAGTAATCAAATAAAACCCAATTAGTGT  850

seq1  TTATTTTATGAAATTAGTAAAAGTTTCATCACTCACTTTTAAGTACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGAAATTAGTAAAAGTTTCATCACTCACTTTTAAGTACTTCA  900

seq1  ATCATGG--TGGAAAATGCATTAGATATA-GTAACCTTT-GAAAATGATG  946
      |||||||   ||||||||||||||||||| ||||||||| ||||||||||
seq2  ATCATGGGTGGGAAAATGCATTAGATATAGGTAACCTTTGGAAAATGATG  950

seq1  ACTT-ATTCTTACAGTTGTTGATTTGGCTGGAT-GGATTTTTT-CAAGAC  993
      |||| |||||||||||||||||||||||||||| ||||||||| || |||
seq2  ACTTAATTCTTACAGTTGTTGATTTGGCTGGATGGGATTTTTTCCAGGAC  1000

seq1  TCAGGTCCCCCTCATCATCAACACCCTGTAAGCACTGACTGTAAGCACAG  1043
      ||||||||||||||||||||   |||||| ||||||||||||||||||||
seq2  TCAGGTCCCCCTCATCATCACACCCCTGTTAGCACTGACTGTAAGCACAG  1050

seq1  GCT-GACCT-CCTCAG-CTCCACATTCACAG-CCTG--TAAAGACTACAC  1087
      ||| ||||| |||||| |||| ||||||||| ||||   ||||||||  |
seq2  GCTGGACCTCCCTCAGCCTCCCCATTCACAGTCCTGGTAAAAGACTATCC  1100

seq1  TC-ACTGGCA-CTGCTTCAC-AAAGCCAT  1113
      || ||||||| |||| |||| ||||||||
seq2  TCTACTGGCACCTGCATCACAAAAGCCAT  1129

seq1: chr2_120360115_120361061
seq2: B6Ng01-306J02.g_70_1017 (reverse)

seq1  CAGTTTTATTCTCCTTTAAAACACGAGG--ACATAAACCGCGTGATTTGG  48
      ||||||||||| ||||  |||| |||||  |||||| |||||||||||||
seq2  CAGTTTTATTC-CCTT--AAAC-CGAGGACACATAATCCGCGTGATTTGG  46

seq1  -ATGTGT-AGGAAGAA-CCATGGCTACCTTCTAAAG-TAGAAGTG-TTCA  93
       |||||| ||  |||| |||||||| |  ||||||| |||||||| ||||
seq2  AATGTGTGAGAGAGAACCCATGGCTTC--TCTAAAGTTAGAAGTGTTTCA  94

seq1  GGAGA--TGTGA--GTGA-TCTCCAGAAGGAAAGGACTTTGTCTC-CTTA  137
       ||||  |||||  |||| |||||||||||||||||| ||||||| | ||
seq2  AGAGAAGTGTGAAGGTGATTCTCCAGAAGGAAAGGAC-TTGTCTCTCCTA  143

seq1  TTTTTTGAGCGGTTCTTTAAATTTTGCTTATGAGGACCTGATTTAGGGGT  187
      ||||| |||||| |||||||   |||| ||||||||| ||||| ||||||
seq2  TTTTTGGAGCGG-TCTTTAA---TTGC-TATGAGGACTTGATTAAGGGGT  188

seq1  TGGAAGTGGAAGGAGTGGGGATTTCAGTAATGGAA-TCTTATTTGACTTC  236
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TGGAAGTGGAA-GAGTGGGGATTTCAGTAATGGAATTCTTATTTGACTTC  237

seq1  TGATGTGGCTCAGATTGCTCGGTAATGGGGCAAGCT-CTTGGCACCTCAC  285
      |||||||||||||| ||||||||||||| ||||||| || ||||||||||
seq2  TGATGTGGCTCAGA-TGCTCGGTAATGGAGCAAGCTCCTGGGCACCTCAC  286

seq1  AGAAAGCAGTGCCATCAGAAATGGCTTTGTGACTGGGAGATCCAGGAGGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGTGCCATCAGAAATGGCTTTGTGACTGGGAGATCCAGGAGGT  336

seq1  CCTGCTTTTTGTGTTTTTATCACTGGAGGATTACTTGTTTTATCAACTGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTTGTGTTTTTATCACTGGAGGATTACTTGTTTTATCAACTGG  386

seq1  TTTGCGCAGTCCTGCAGTTATTAAGCTAAAATTAAAGAGAGGCTTCTCTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGCAGTCCTGCAGTTATTAAGCTAAAATTAAAGAGAGGCTTCTCTA  436

seq1  GTGTGTCTGACTTGCTGCCAATGACTTCTTTCAGGGCTGACTGTAAATCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGACTTGCTGCCAATGACTTCTTTCAGGGCTGACTGTAAATCT  486

seq1  AGAGTCTTCTGGGAAGGGTAAGGTGTCCAGCGGCGGAACTTGTCCCTTGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCTGGGAAGGGTAAGGTGTCCAGCGGCGGAACTTGTCCCTTGC  536

seq1  TTTGGTGCCATTTTTTCCATTAATTTTTGAGGCTGCCGTGTCTGTTTGTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCCATTTTTTCCATTAATTTTTGAGGCTGCCGTGTCTGTTTGTT  586

seq1  TAGTGGTTTGACTTTCTCGCTGTTCAAAATTGAACTCAAGTAAGCCTTCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTGACTTTCTCGCTGTTCAAAATTGAACTCAAGTAAGCCTTCT  636

seq1  GAAGGAAACGTATCGCTTGCGTATCCCTCAGGAGGACTCCTGTACTTGGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAACGTATCGCTTGCGTATCCCTCAGGAGGACTCCTGTACTTGGC  686

seq1  AGCTTTGTCCCTGTCTTGCCTCTGCCACTTGCATCTCTCCTGACTGTACT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCCCTGTCTTGCCTCTGCCACTTGCATCTCTCCTGACTGTACT  736

seq1  TGCTTGGCTTATTAGATTTCTTGTTCCACATCTTGGTCATGTCTTCCATT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTTATTAGATTTCTTGTTCCACATCTTGGTCATGTCTTCCATT  786

seq1  TGATAGTTAGGATTTCTGTTTCTGCCTTGTTGAAATTTGTCTCCAGGGCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTAGGATTTCTGTTTCTGCCTTGTTGAAATTTGTCTCCAGGGCC  836

seq1  ATTGTAATTCCAGCTATTCGTACTACGTACACTGGATTTCCAGTTTCCGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTCCAGCTATTCGTACTACGTACACTGGATTTCCAGTTTCCGT  886

seq1  TACTGTTGTTCATGTGCCAGCTGGGAAAGCCACCTGTTCCTTCAGAATGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGTTCATGTGCCAGCTGGGAAAGCCACCTGTTCCTTCAGAATGC  936

seq1  CAACTGGAATTC  947
      ||||||||||||
seq2  CAACTGGAATTC  948