BAC Information

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BAC

Clone NameB6Ng01-308I02
Chromosome2 (Build37)
Map Location 103,809,086 - 103,952,042
singlet/doubletdoublet
Overlap geneLmo2, Fbxo3, Cd59b, Cd59a
Upstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965
Downstream geneA930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I02.bB6Ng01-308I02.g
ACCGA100990GA100991
length1,1841,042
definitionB6Ng01-308I02.b B6Ng01-308I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,950,847 - 103,952,042)(103,809,086 - 103,810,141)
sequence
gaattcacatgctcttcaatgtgcctcctctgccccatggaacccaacac
tttgaacagaaagcctagattttcagctacacaccaggaatttacataga
aatcatcagatactcctatttttaaaacaattttctctactggtccttac
ttaactgaaaggtttctcctttctaccgtggaagacagcttttatggtta
tctcttaggaagggtttggtctcatattgcagactacactgaaatggtca
tctctccttgtatcattaatcattaacatgtatatcttagagctataacc
actaaaaacaaagggcacagctgctggcttcttccctgtctaccatttgc
taagttcttacatggagattccaagtccagctgacttgtgaagcagatga
tatggattgtgcatattatactccttctcttctcaaaaaggcctcactct
ctgaggccactgtcctaggcatctgcagtgtggctttgcaaatgactaat
tttccttattagtcatgtgacatttagtatcctctgagctcatctcaggt
cccctcaggactccatgtgtactagataggtgacagatttataaacagtc
atttgaaacaggcaaacaggccatggccaaagtttggacaaatacccttt
cttcatctttgcatctctatctcagaccctggtacactggaggctcccag
aagtttgggaggcaggcacattatcactactaagaagcccgagttttgga
tcagatgaatttccaaattccaaactctatgttggctgcttgacctttgc
ctgctgtgttatctgatcctgcattttctcatctgtcacgcagatgattg
ccccacggttatgtgggaagtgccatttttgtataaagtatatagaaaat
gcttagtgcccagtacttggtgaccaactggtgttaacaaagggcagcca
ttacttggtggacaactgagtaaggtttggagaggtccatgtttcccagg
ttctcatccctgaccacacagaaaaccagagcttcttaccgctacagcat
agagacagaatcctggtcagagagcagtgctgttcatatgcatgagaacc
accgttggaacagtgttagcatgtgaagctaacgctgattggaaagagat
tcgttaacaggcagggtgctcttagacacccttg
gaattcatttctgactatcatcttccggggtgagctggtctaggttatta
aagcaatctttaaattggggctgaaatgcctatgtctttgatccgggctg
ttcttactaaacaatggattctgagagcactcgggactttcctctttaca
aacctgaagactgtcatcatcataagctaacgggccttgaacgatcattt
ctggactcagtttcaaggaactcaaggcccagggggacctaggtttttct
cctgaaaagtagctagctggaatccatctcttcccttctgtatttctttc
tccttctagaacttgtcttcaagcttgaaggagaaacctgcccttttctt
tgttttatataagacaaaataatagtaagtaataactgaaagtcttttta
tcgggaaggaacttcctccggtccaagcaagtattgctgctgatacttta
cagagagggccagcctcaccgctggagttcgctctttgaaagaggctagg
ggagggaattctgccgccagcagatggagaggagacccggacaacgtggt
ccctcccagacaccctccctgcgggattagctgcccccagctctgctcag
gcgcacctagcgcgtgaggttcctggtcacacagcttgcgcccctctctg
gagagcagtcgcagctactagcttgccgccagcagagccgcactgtctcg
ggcatcgcagagcaccacgactgtggacttgggacctcgaacccgagacg
agcgcgcgctagccagccattagcaacgcttgcatttctgcaggtgctta
tttcacattcttgtcttttctttcctgctggaacgggcgagtggttactt
tcagcctgaggccaaagggaaaaggcagaagaagggaactctgaaaaaga
cagtttagtggcagcgggattcttgccccaggagagggctcagggagact
ctcggtctctgccgcgggcccttttagagccaagtcaggcctgcgctgtc
gcgtgctgctgctgcgctgccgcgcgcgccgcgcgcgctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103950847_103952042
seq2: B6Ng01-308I02.b_45_1228 (reverse)

seq1  CAAGG--GTCTAAG---ACACTGCTGGTTTTAACAGAATCTCTTTCTCAT  45
      |||||  |||||||   || ||||   | ||||| ||||||||||| || 
seq2  CAAGGGTGTCTAAGAGCACCCTGC--CTGTTAAC-GAATCTCTTTC-CAA  46

seq1  TCTAGCTGTTAGCCTCACATGCTACCACTGTTTCCAACCGGTGGTTTCTT  95
      || ||| |||||| |||||||||| ||||| |||||| ||||||||   |
seq2  TC-AGC-GTTAGCTTCACATGCTAACACTG-TTCCAA-CGGTGGTT--CT  90

seq1  CATGCAATATGAACAGCACTTGCTCTCCTGACCAGGATTCCTGTCTCTAT  145
      ||||| ||||||||||||| |||||| |||||||||||| ||||||||||
seq2  CATGC-ATATGAACAGCAC-TGCTCT-CTGACCAGGATT-CTGTCTCTAT  136

seq1  GCTGTAGCCGGTAAGAGCCTCTGGTTTTTCTGTGTGGTCAGGGATGAGAA  195
      ||||||| ||||||||  |||||| |||||||||||||||||||||||||
seq2  GCTGTAG-CGGTAAGAAGCTCTGG-TTTTCTGTGTGGTCAGGGATGAGAA  184

seq1  CCTGGGAAACATGGACCTCTCCAAACCTTACTCAGTTTGTCCACCAAGTA  245
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGGGAAACATGGACCTCTCCAAACCTTACTCAG-TTGTCCACCAAGTA  233

seq1  ATGGCTGCCCTTTGTTAACACCAGTTGGTCACCAAGTACTGGGCACTAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCCCTTTGTTAACACCAGTTGGTCACCAAGTACTGGGCACTAAG  283

seq1  CATTTTCTATATACTTTATACAAAAATGGCACTTCCCACATAACCGTGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTATATACTTTATACAAAAATGGCACTTCCCACATAACCGTGGG  333

seq1  GCAATCATCTGCGTGACAGATGAGAAAATGCAGGATCAGATAACACAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCTGCGTGACAGATGAGAAAATGCAGGATCAGATAACACAGCA  383

seq1  GGCAAAGGTCAAGCAGCCAACATAGAGTTTGGAATTTGGAAATTCATCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGTCAAGCAGCCAACATAGAGTTTGGAATTTGGAAATTCATCTG  433

seq1  ATCCAAAACTCGGGCTTCTTAGTAGTGATAATGTGCCTGCCTCCCAAACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACTCGGGCTTCTTAGTAGTGATAATGTGCCTGCCTCCCAAACT  483

seq1  TCTGGGAGCCTCCAGTGTACCAGGGTCTGAGATAGAGATGCAAAGATGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGCCTCCAGTGTACCAGGGTCTGAGATAGAGATGCAAAGATGAA  533

seq1  GAAAGGGTATTTGTCCAAACTTTGGCCATGGCCTGTTTGCCTGTTTCAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTATTTGTCCAAACTTTGGCCATGGCCTGTTTGCCTGTTTCAAA  583

seq1  TGACTGTTTATAAATCTGTCACCTATCTAGTACACATGGAGTCCTGAGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTATAAATCTGTCACCTATCTAGTACACATGGAGTCCTGAGGG  633

seq1  GACCTGAGATGAGCTCAGAGGATACTAAATGTCACATGACTAATAAGGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGATGAGCTCAGAGGATACTAAATGTCACATGACTAATAAGGAA  683

seq1  AATTAGTCATTTGCAAAGCCACACTGCAGATGCCTAGGACAGTGGCCTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCATTTGCAAAGCCACACTGCAGATGCCTAGGACAGTGGCCTCA  733

seq1  GAGAGTGAGGCCTTTTTGAGAAGAGAAGGAGTATAATATGCACAATCCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGGCCTTTTTGAGAAGAGAAGGAGTATAATATGCACAATCCAT  783

seq1  ATCATCTGCTTCACAAGTCAGCTGGACTTGGAATCTCCATGTAAGAACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGCTTCACAAGTCAGCTGGACTTGGAATCTCCATGTAAGAACTT  833

seq1  AGCAAATGGTAGACAGGGAAGAAGCCAGCAGCTGTGCCCTTTGTTTTTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGGTAGACAGGGAAGAAGCCAGCAGCTGTGCCCTTTGTTTTTAG  883

seq1  TGGTTATAGCTCTAAGATATACATGTTAATGATTAATGATACAAGGAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATAGCTCTAAGATATACATGTTAATGATTAATGATACAAGGAGAG  933

seq1  ATGACCATTTCAGTGTAGTCTGCAATATGAGACCAAACCCTTCCTAAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATTTCAGTGTAGTCTGCAATATGAGACCAAACCCTTCCTAAGAG  983

seq1  ATAACCATAAAAGCTGTCTTCCACGGTAGAAAGGAGAAACCTTTCAGTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATAAAAGCTGTCTTCCACGGTAGAAAGGAGAAACCTTTCAGTTA  1033

seq1  AGTAAGGACCAGTAGAGAAAATTGTTTTAAAAATAGGAGTATCTGATGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGACCAGTAGAGAAAATTGTTTTAAAAATAGGAGTATCTGATGAT  1083

seq1  TTCTATGTAAATTCCTGGTGTGTAGCTGAAAATCTAGGCTTTCTGTTCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTAAATTCCTGGTGTGTAGCTGAAAATCTAGGCTTTCTGTTCAA  1133

seq1  AGTGTTGGGTTCCATGGGGCAGAGGAGGCACATTGAAGAGCATGTGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGTTCCATGGGGCAGAGGAGGCACATTGAAGAGCATGTGAATT  1183

seq1  C  1196
      |
seq2  C  1184

seq1: chr2_103809086_103810141
seq2: B6Ng01-308I02.g_67_1108

seq1  GAATTCATTTCTGACTATCATCTTCCGGGGTGAGCTGGTCTAGGTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGACTATCATCTTCCGGGGTGAGCTGGTCTAGGTTATTA  50

seq1  AAGCAATCTTTAAATTGGGGCTGAAATGCCTATGTCTTTGATCCGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTTTAAATTGGGGCTGAAATGCCTATGTCTTTGATCCGGGCTG  100

seq1  TTCTTACTAAACAATGGATTCTGAGAGCACTCGGGACTTTCCTCTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTAAACAATGGATTCTGAGAGCACTCGGGACTTTCCTCTTTACA  150

seq1  AACCTGAAGACTGTCATCATCATAAGCTAACGGGCCTTGAACGATCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGACTGTCATCATCATAAGCTAACGGGCCTTGAACGATCATTT  200

seq1  CTGGACTCAGTTTCAAGGAACTCAAGGCCCAGGGGGACCTAGGTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCAGTTTCAAGGAACTCAAGGCCCAGGGGGACCTAGGTTTTTCT  250

seq1  CCTGAAAAGTAGCTAGCTGGAATCCATCTCTTCCCTTCTGTATTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGTAGCTAGCTGGAATCCATCTCTTCCCTTCTGTATTTCTTTC  300

seq1  TCCTTCTAGAACTTGTCTTCAAGCTTGAAGGAGAAACCTGCCCTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGAACTTGTCTTCAAGCTTGAAGGAGAAACCTGCCCTTTTCTT  350

seq1  TGTTTTATATAAGACAAAATAATAGTAAGTAATAACTGAAAGTCTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATATAAGACAAAATAATAGTAAGTAATAACTGAAAGTCTTTTTA  400

seq1  TCGGGAAGGAACTTCCTCCGGTCCAAGCAAGTATTGCTGCTGATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAGGAACTTCCTCCGGTCCAAGCAAGTATTGCTGCTGATACTTTA  450

seq1  CAGAGAGGGCCAGCCTCACCGCTGGAGTTCGCTCTTTGAAAGAGGCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGCCAGCCTCACCGCTGGAGTTCGCTCTTTGAAAGAGGCTAGG  500

seq1  GGAGGGAATTCTGCCGCCAGCAGATGGAGAGGAGACCCGGACAACGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAATTCTGCCGCCAGCAGATGGAGAGGAGACCCGGACAACGTGGT  550

seq1  CCCTCCCAGACACCCTCCCTGCGGGATTAGCTGCCCCCAGCTCTGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAGACACCCTCCCTGCGGGATTAGCTGCCCCCAGCTCTGCTCAG  600

seq1  GCGCACCTAGCGCGTGAGGTTCCTGGTCACACAGCTTGCGCCCCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACCTAGCGCGTGAGGTTCCTGGTCACACAGCTTGCGCCCCTCTCTG  650

seq1  GAGAGCAGTCGCAGCTACTAGCTTGCCGCCAGCAGAGCCGCACTGTCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGTCGCAGCTACTAGCTTGCCGCCAGCAGAGCCGCACTGTCTCG  700

seq1  GGCATCGCAGAGCACCACGACTGTGGACTTGGGACCTCGAACCCGAGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGCAGAGCACCACGACTGTGGACTTGGGACCTCGAACCCGAGACG  750

seq1  AGCGCGCGCTAGCCAGCCATTAGCAACGCTTGCATTTCTGCAGGTGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCGCGCTAGCCAGCCATTAGCAACGCTTGCATTTCTGCAGGTGCTTA  800

seq1  TTTCACATTCTTGTCTTTTCTTTCCTGCTGGAACGGGCGAGTGGTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTCTTGTCTTTTCTTTCCTGCTGGAACGGGCGAGTGGTTACTT  850

seq1  TCAGCCTGAGGCCAAAGGG-AAAGGCAGAAGAAGGGGAACTCTGAAAAAG  899
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TCAGCCTGAGGCCAAAGGGAAAAGGCAGAAGAA-GGGAACTCTGAAAAAG  899

seq1  ACAGTTTAGTGGCAGCGGGATTCTTGCCCCAGGAGAGGGGCTCAGGGGAG  949
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ACAGTTTAGTGGCAGCGGGATTCTTGCCCCAGGAGA-GGGCTCA-GGGAG  947

seq1  ACTCTCGGTCTCTGCCGCGGGCCCTTTTAAGAAGCCAAGTCAGGGCTGCC  999
      |||||||||||||||||||||||||||||   |||||||||||| ||| |
seq2  ACTCTCGGTCTCTGCCGCGGGCCCTTTTA--GAGCCAAGTCAGGCCTG-C  994

seq1  GCTGTCGCCGTTGCTGCTGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGC  1049
      ||||||||   ||||||||||| ||||||||    |||   ||||||   
seq2  GCTGTCGC--GTGCTGCTGCTG-CGCTGCCG----CGC--GCGCCGCGCG  1035

seq1  CGCTATT  1056
      |||||||
seq2  CGCTATT  1042