BAC Information

Click to search

BAC

Clone NameB6Ng01-308J15
Chromosome2 (Build37)
Map Location 143,747,716 - 143,898,674
singlet/doubletdoublet
Overlap geneDstn, Rrbp1, 4930517K23Rik
Upstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308J15.bB6Ng01-308J15.g
ACCGA101058GA101059
length1,1331,084
definitionB6Ng01-308J15.b B6Ng01-308J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,897,542 - 143,898,674)(143,747,716 - 143,748,799)
sequence
gaattcacaaaacctgcagcccagcactgccctgccctgggctgtccact
tgtacaggagtgtgtcttaaatgggaagacaaaggaagacacgcatgcct
cggagagttgtgcccgtgggaacagcacagacagacataaatcctgctaa
accttggccctcgttttccagcctcagactggagctgcatcactgcccca
cccccaccccacccccactccctttctgaatgagcatttcagctctcgga
cagagcagcaagctaccaatttccctgtctttccagtcagtagacagcca
aggtggagcctctaattgtgtgaaaataaataataaacaaatctcctcta
ataattatatataatctcctggtcctgtttctctggaaacccctgataat
aatgttcccaaggatgtctgtgtgctaaaaaaaaatgagcaaagtataat
ggcacggattacggaaacgtcactgcagatgccgttgccgttactttgta
ggccaactctaacaattaatttacaaaagaaaaaaaaaaattagagacta
gagagatggctcagtgaataagaacattttctgtgcccttacaaggacct
gagtttaagtccccagtatccacataaaaagttggctgtggtcatgcatg
tacccctaaccccagcattgtggggtcagagcttgctggagcttgctgga
gcttgctggagcttgctggagcttgctggagcttgctggccaactgccta
cctacagatccagtgaagactgtttcaagaaagtaggacaggatgataga
gcacggcactgacattgcactccagccgcttacgtgcatagaacacacac
acacgcacacgcacaaagaaaatatgtaaaccccatagaaggcatatgta
ttaagtgcccctcgattcccgggttctatagaaattttgctgttttgagt
tttctgtctgctcctccacagaatctcacaacatcaggctgttatgatca
agagacaacaggatcatgaagaacatacatggcagaggctagatttcagg
tccacaggtgtacatgtgcctctggggcaatggtttagggcctctcctag
ctgggtatatctaatcatctaatcatctaatca
gaattctcaggttgtgaaattttgttacagaaatgtatatacatttaaat
tttttctcattgctccttaaaaaaaggaaaacaacaaaggtgaaaatcta
aaccactataattactcatctgtggcactacctaccagcccagaaccttg
cgtatgccgtatgcctgcagtcactctactaagccatccctagccctatt
aaaatactgaatcagtatttcaccggtagaaaataaaataataagtttta
catattttaattattggaaattctgtatatattttacactaaagcacatc
tcaggctttggtgttgtgcacctattagcttagcattctggaggcagggg
caggggcagtcttgagttcttggccagtttggaacttaaacatctaaggg
ttttttgtttgtttgtttgttttgttttgttttgtttttcaagacggggt
ttctctgtgtagacctggctgtcctggaactcactctgtagaccaggctg
gcctcgaactcagaaatccgcctgcctctgcctctcgagtgctgggttac
aggtctgcaccaccatgcccggcaagcatctaagtattaataggggatat
tggacttgtatttagataccaggacagtagtttaaaaagtagtttctcat
acctacttttagttgtccttaataattattagcaatggaatttagaattt
taaaattgttaattaaaataaaataaactttaaaaatacaattccttagc
cacatttaagtgagtcactaaactgtatatgattagtggtggtctttttg
gaacagctatatacactatgaattggtttattcagtttgtggtgggaagt
tagcttgaatactgacactttgattttcggtgcacttctggacatgtcta
tgagttagtgagaatgtacatttctgtttattatttgtgtgtatgtgtat
gatctgcgctctgtgagttcatgtgtacacatgcatgctgcaagcatcca
aggactgaatagaatggttggatcctcaaaagtggagggcaagttaaagc
cacccatgagggtttcagctcagagccttagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143897542_143898674
seq2: B6Ng01-308J15.b_47_1179 (reverse)

seq1  TGATATAGATGATATAGATGATATAGATATAGACCAGGCTA-GAGAGCCC  49
      |||| |||||||| |||||||| |||||||  |||  |||| ||||| ||
seq2  TGAT-TAGATGAT-TAGATGAT-TAGATAT--ACCCAGCTAGGAGAGGCC  45

seq1  CTAAACCA-TGCCCCAGAGGCACATGTACA-CTGT-GACCTGAAATCTAG  96
      |||||||| ||||||||||||||||||||| |||| ||||||||||||||
seq2  CTAAACCATTGCCCCAGAGGCACATGTACACCTGTGGACCTGAAATCTAG  95

seq1  CCTCTGCCATGTATG-TCTTCATGATCCTGTTGTCTTCTTGATCATAACA  145
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CCTCTGCCATGTATGTTCTTCATGATCCTGTTGTC-TCTTGATCATAACA  144

seq1  GCCTGATGTTGTGAGA-TCTGTGGAGGAGCAGACAGAAAACTCAAAACAG  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCTGATGTTGTGAGATTCTGTGGAGGAGCAGACAGAAAACTCAAAACAG  194

seq1  CAAAATTTCTATAGAACCC-GGAATCGAGGGGCACTTAATACATATGCCC  243
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CAAAATTTCTATAGAACCCGGGAATCGAGGGGCACTTAATACATATG-CC  243

seq1  TTCTATGGGGTTTACATATTTTCTTTGTGCGTGTGCGTGTGTGTGTGTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGGGTTTACATATTTTCTTTGTGCGTGTGCGTGTGTGTGTGTTC  293

seq1  TATGCACGTAAGCGGCTGGAGTGCAATGTCAGTGCCGTGCTCTATCATCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACGTAAGCGGCTGGAGTGCAATGTCAGTGCCGTGCTCTATCATCC  343

seq1  TGTCCTACTTTCTTGAAACAGTCTTCACTGGATCTGTAGGTAGGCAGTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTACTTTCTTGAAACAGTCTTCACTGGATCTGTAGGTAGGCAGTTG  393

seq1  GCCAGCAAGCTCCAGCAAGCTCCAGCAAGCTCCAGCAAGCTCCAGCAAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAGCTCCAGCAAGCTCCAGCAAGCTCCAGCAAGCTCCAGCAAGC  443

seq1  TCCAGCAAGCTCTGACCCCACAATGCTGGGGTTAGGGGTACATGCATGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAGCTCTGACCCCACAATGCTGGGGTTAGGGGTACATGCATGAC  493

seq1  CACAGCCAACTTTTTATGTGGATACTGGGGACTTAAACTCAGGTCCTTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAACTTTTTATGTGGATACTGGGGACTTAAACTCAGGTCCTTGT  543

seq1  AAGGGCACAGAAAATGTTCTTATTCACTGAGCCATCTCTCTAGTCTCTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAGAAAATGTTCTTATTCACTGAGCCATCTCTCTAGTCTCTAA  593

seq1  TTTTTTTTTTTCTTTTGTAAATTAATTGTTAGAGTTGGCCTACAAAGTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCTTTTGTAAATTAATTGTTAGAGTTGGCCTACAAAGTAA  643

seq1  CGGCAACGGCATCTGCAGTGACGTTTCCGTAATCCGTGCCATTATACTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAACGGCATCTGCAGTGACGTTTCCGTAATCCGTGCCATTATACTTT  693

seq1  GCTCATTTTTTTTTAGCACACAGACATCCTTGGGAACATTATTATCAGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTTTTTTAGCACACAGACATCCTTGGGAACATTATTATCAGGG  743

seq1  GTTTCCAGAGAAACAGGACCAGGAGATTATATATAATTATTAGAGGAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGAGAAACAGGACCAGGAGATTATATATAATTATTAGAGGAGAT  793

seq1  TTGTTTATTATTTATTTTCACACAATTAGAGGCTCCACCTTGGCTGTCTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTATTTATTTTCACACAATTAGAGGCTCCACCTTGGCTGTCTA  843

seq1  CTGACTGGAAAGACAGGGAAATTGGTAGCTTGCTGCTCTGTCCGAGAGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGAAAGACAGGGAAATTGGTAGCTTGCTGCTCTGTCCGAGAGCT  893

seq1  GAAATGCTCATTCAGAAAGGGAGTGGGGGTGGGGTGGGGGTGGGGCAGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTCATTCAGAAAGGGAGTGGGGGTGGGGTGGGGGTGGGGCAGTG  943

seq1  ATGCAGCTCCAGTCTGAGGCTGGAAAACGAGGGCCAAGGTTTAGCAGGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTCCAGTCTGAGGCTGGAAAACGAGGGCCAAGGTTTAGCAGGAT  993

seq1  TTATGTCTGTCTGTGCTGTTCCCACGGGCACAACTCTCCGAGGCATGCGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGTCTGTGCTGTTCCCACGGGCACAACTCTCCGAGGCATGCGT  1043

seq1  GTCTTCCTTTGTCTTCCCATTTAAGACACACTCCTGTACAAGTGGACAGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTTGTCTTCCCATTTAAGACACACTCCTGTACAAGTGGACAGC  1093

seq1  CCAGGGCAGGGCAGTGCTGGGCTGCAGGTTTTGTGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGGGCAGTGCTGGGCTGCAGGTTTTGTGAATTC  1133

seq1: chr2_143747716_143748799
seq2: B6Ng01-308J15.g_67_1150

seq1  GAATTCTCAGGTTGTGAAATTTTGTTACAGAAATGTATATACATTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTTGTGAAATTTTGTTACAGAAATGTATATACATTTAAAT  50

seq1  TTTTTCTCATTGCTCCTTAAAAAAAGGAAAACAACAAAGGTGAAAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCATTGCTCCTTAAAAAAAGGAAAACAACAAAGGTGAAAATCTA  100

seq1  AACCACTATAATTACTCATCTGTGGCACTACCTACCAGCCCAGAACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTATAATTACTCATCTGTGGCACTACCTACCAGCCCAGAACCTTG  150

seq1  CGTATGCCGTATGCCTGCAGTCACTCTACTAAGCCATCCCTAGCCCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGCCGTATGCCTGCAGTCACTCTACTAAGCCATCCCTAGCCCTATT  200

seq1  AAAATACTGAATCAGTATTTCACCGGTAGAAAATAAAATAATAAGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTGAATCAGTATTTCACCGGTAGAAAATAAAATAATAAGTTTTA  250

seq1  CATATTTTAATTATTGGAAATTCTGTATATATTTTACACTAAAGCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAATTATTGGAAATTCTGTATATATTTTACACTAAAGCACATC  300

seq1  TCAGGCTTTGGTGTTGTGCACCTATTAGCTTAGCATTCTGGAGGCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTTGGTGTTGTGCACCTATTAGCTTAGCATTCTGGAGGCAGGGG  350

seq1  CAGGGGCAGTCTTGAGTTCTTGGCCAGTTTGGAACTTAAACATCTAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTCTTGAGTTCTTGGCCAGTTTGGAACTTAAACATCTAAGGG  400

seq1  TTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCAAGACGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCAAGACGGGGT  450

seq1  TTCTCTGTGTAGACCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGACCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  500

seq1  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTCGAGTGCTGGGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTCGAGTGCTGGGTTAC  550

seq1  AGGTCTGCACCACCATGCCCGGCAAGCATCTAAGTATTAATAGGGGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCACCACCATGCCCGGCAAGCATCTAAGTATTAATAGGGGATAT  600

seq1  TGGACTTGTATTTAGATACCAGGACAGTAGTTTAAAAAGTAGTTTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGTATTTAGATACCAGGACAGTAGTTTAAAAAGTAGTTTCTCAT  650

seq1  ACCTACTTTTAGTTGTCCTTAATAATTATTAGCAATGGAATTTAGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTTTAGTTGTCCTTAATAATTATTAGCAATGGAATTTAGAATTT  700

seq1  TAAAATTGTTAATTAAAATAAAATAAACTTTAAAAATACAATTCCTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGTTAATTAAAATAAAATAAACTTTAAAAATACAATTCCTTAGC  750

seq1  CACATTTAAGTGAGTCACTAAACTGTATATGATTAGTGGTGGTCTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAAGTGAGTCACTAAACTGTATATGATTAGTGGTGGTCTTTTTG  800

seq1  GAACAGCTATATACACTATGAATTGGTTTATTCAGTTTGTGGTGGGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTATATACACTATGAATTGGTTTATTCAGTTTGTGGTGGGAAGT  850

seq1  TAGCTTGAATACTGACACTTTGATTTTCGGTGCACTTCTGGACATGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGAATACTGACACTTTGATTTTCGGTGCACTTCTGGACATGTCTA  900

seq1  AGAGTTAGTGAAGAATGTCCATTTCTGTTTATTATTTGTGTGTATGTGTA  950
       ||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TGAGTTAGTG-AGAATGTACATTTCTGTTTATTATTTGTGTGTATGTGTA  949

seq1  T-ATCTGCGCCTCTGTGAGTTCATGTGTACCACATGCATGCAG-AAGCAT  998
      | ||||||| ||||||||||||||||||| ||||||||||| | ||||||
seq2  TGATCTGCG-CTCTGTGAGTTCATGTGTA-CACATGCATGCTGCAAGCAT  997

seq1  CCAAAGACCAAAAGAGAAT-GTTGGATCCCTCAAAGTGGAGGGATAGTTA  1047
      |||| || |  || ||||| |||||||||   |||||||||||  |||| 
seq2  CCAAGGA-CTGAATAGAATGGTTGGATCCTCAAAAGTGGAGGGCAAGTT-  1045

seq1  AAAGCCA-CCATGAGGG-TTCAGCTCAAGAG-CTTAGAGT  1084
      ||||||| ||||||||| |||||||| |||| ||||||||
seq2  AAAGCCACCCATGAGGGTTTCAGCTC-AGAGCCTTAGAGT  1084