BAC Information

Click to search

BAC

Clone NameB6Ng01-308M18
Chromosome2 (Build37)
Map Location 44,011,762 - 44,163,150
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308M18.bB6Ng01-308M18.g
ACCGA101207GA101208
length1,1401,138
definitionB6Ng01-308M18.b B6Ng01-308M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,162,012 - 44,163,150)(44,011,762 - 44,012,895)
sequence
gaattcacacaagtgtagtgtgaataggtcagaaagaattatctctaaat
cagcataaaatttgaagtcatttttatactatctctgttttaagtagact
ttaagctaattttaattgccttttacaatctgtaaaaaaatcaatttaat
aggagtttgtgcaatagtttcggcacaatataattatagctcatccaaac
aagtaagtagaaagcttggtaagaaatatacccatatattagttgggata
aataatatgtatttctaaattttccaagtttttccctatttttatggcag
tatgggtttatgacaataaaattaaggctcgatgtttataatatggaatc
tttgattagctgattttgcagaaaactaaactctttacacaggtcaaacc
agttttagaagaaacacatgccttttccctaagacgtccctttaggtatt
ggtggtgctgttgacctttcggtgactgtgttccagaatccaggagaatg
tgtttatattgttctttattcttatctcctggttgaatatatcaggtgga
gagtcttttgttgagcaagtgcagaaagcaggaaacccagatgactatat
gtttgcaatctgaaggagcaaggaccctgtgctgtgttgtgcagatttat
attctaatttctagttcttccttgatcatatcaattttaagggtgttcta
ttgtctgctggactgcatcttagaatagtggaatatgaaacatacaagcc
atgtacacacaacaccactgagcagaagcaaagctgttggtatattgcca
agttggaaaaaaaaataggcagctgctttcttgttcacaagcacacaatt
caccacaatccagccttgatttctcttctctttggaaaacatacctatta
atgttccttttatttgtaaaattaaaaatgaggtagttattcaactaatg
tacatacttaaacctcaatttgcctcagtttctgacactatagatgccca
attagtattcgctgatcaaattagccagggtatttatgacttcgttgttt
gatctcgcacacaaggtcgtgaacagaagaaaatgctttagttacagtta
gcagctctttatgcacattaggcagagattaccaggatct

gaattctctctgacttcatgagtcagcccatgttcaaggcagaatatctg
tatttaagttgagtttttgtgaaagactataggtccataggaagaagaga
ggaattaagtgtagccagtgatccatatatagacagtttcacgtgtggtt
aaggttcaagaacataccatggtgagagttgtcaactatattctgttctg
tccaagagagaaggaagaaagtccttgatttcagattctattgataccaa
gagaatgaaacatctcttcatcacatttaaatgtatagaggccctgcata
ggtcaaggaagatttaggacccagtgtagagcattacactcaccctgaga
caaatagcattgcataagttgtgcctgcagagctgtagatgatcccttta
caattcattctggaacaaaaaatattacgatgataagaacaaaccatgat
taaaaatgaattgcatttagtcatcctgaaaatactcttctctctccaaa
tttatacatatattaagaacacttatttcctttaccttagtttataacaa
aatagaggaatccatgtaaagaaatatttgtaaagtagaaatcattctat
tttattattttaaaggcaccatcgcccaccaattttcttgctctgtgcct
ccttcagtttattacccccatctcttattgtccactgccatctctcatat
cacaccagttaacaactcttactctgttttttttctacccattagtcata
tttttctcatggaggtatgatttcaacacaagagaataaccttatttcct
attgcagaatatcacacataaaaagacatgtttcaagaaagagttgtttc
ttcataattctgaaaatataaatgagtcctccataattgatcttaagact
tattgtgggggcttagtaaataacatttaagtattcagaattgtggtctt
taatttctacttttgaatattacctcaagaatcagctagaggaactcatt
gtggattttcaaatattctctcaaggcctcagagtatgtcagtcctttga
aggaaatgggaaaaattatactattccttaaattcaataataaagaaaat
atgaaatatatggtgaaccttttctcaacacttgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44162012_44163150
seq2: B6Ng01-308M18.b_48_1187 (reverse)

seq1  AGATCCTGGT-ATCTCTGCTTAATGTGCAT-AAGAGCTGGCTACTGGTTA  48
      |||||||||| |||||||| |||||||||| ||||||| ||||   || |
seq2  AGATCCTGGTAATCTCTGCCTAATGTGCATAAAGAGCT-GCTAACTGTAA  49

seq1  CTAAAGCATTT--CTCTGTTCACGA-CTTGTGTGCGAGATCAAACAACGA  95
      |||||||||||   ||||||||||| ||||||||||||||||||||||||
seq2  CTAAAGCATTTTCTTCTGTTCACGACCTTGTGTGCGAGATCAAACAACGA  99

seq1  AGTCAATAAATTACCTGGCTAATTTGATCAGCGAATACTAATTGGGCATC  145
      |||| ||||||  |||||||||||||||||||||||||||||||||||||
seq2  AGTC-ATAAATACCCTGGCTAATTTGATCAGCGAATACTAATTGGGCATC  148

seq1  TATAGTGTTCAGAAAACTGAGGCAAATTGAGGTTTAAGTATGTACATTAG  195
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TATAGTG-TCAG-AAACTGAGGCAAATTGAGGTTTAAGTATGTACATTAG  196

seq1  TTGAATAACTACCTCATTTTTAATTTTACAAATAAAAGGAACCTTAATAG  245
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGAATAACTACCTCATTTTTAATTTTACAAATAAAAGGAACATTAATAG  246

seq1  GTATGTTTTCCAAAGAGAAGAGAAATCAAGGCTGGATTGTGGTGAATTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTCCAAAGAGAAGAGAAATCAAGGCTGGATTGTGGTGAATTGT  296

seq1  GTGCTTGTGAACAAGAAAGCAGCTGCCTATTTTTTTTTCCAACTTGGCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTGAACAAGAAAGCAGCTGCCTATTTTTTTTTCCAACTTGGCAA  346

seq1  TATACCAACAGCTTTGCTTCTGCTCAGTGGTGTTGTGTGTACATGGCTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAACAGCTTTGCTTCTGCTCAGTGGTGTTGTGTGTACATGGCTTG  396

seq1  TATGTTTCATATTCCACTATTCTAAGATGCAGTCCAGCAGACAATAGAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCATATTCCACTATTCTAAGATGCAGTCCAGCAGACAATAGAAC  446

seq1  ACCCTTAAAATTGATATGATCAAGGAAGAACTAGAAATTAGAATATAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAAAATTGATATGATCAAGGAAGAACTAGAAATTAGAATATAAAT  496

seq1  CTGCACAACACAGCACAGGGTCCTTGCTCCTTCAGATTGCAAACATATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAACACAGCACAGGGTCCTTGCTCCTTCAGATTGCAAACATATAG  546

seq1  TCATCTGGGTTTCCTGCTTTCTGCACTTGCTCAACAAAAGACTCTCCACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGGTTTCCTGCTTTCTGCACTTGCTCAACAAAAGACTCTCCACC  596

seq1  TGATATATTCAACCAGGAGATAAGAATAAAGAACAATATAAACACATTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATTCAACCAGGAGATAAGAATAAAGAACAATATAAACACATTCT  646

seq1  CCTGGATTCTGGAACACAGTCACCGAAAGGTCAACAGCACCACCAATACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTCTGGAACACAGTCACCGAAAGGTCAACAGCACCACCAATACC  696

seq1  TAAAGGGACGTCTTAGGGAAAAGGCATGTGTTTCTTCTAAAACTGGTTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGACGTCTTAGGGAAAAGGCATGTGTTTCTTCTAAAACTGGTTTG  746

seq1  ACCTGTGTAAAGAGTTTAGTTTTCTGCAAAATCAGCTAATCAAAGATTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTAAAGAGTTTAGTTTTCTGCAAAATCAGCTAATCAAAGATTCC  796

seq1  ATATTATAAACATCGAGCCTTAATTTTATTGTCATAAACCCATACTGCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAACATCGAGCCTTAATTTTATTGTCATAAACCCATACTGCCA  846

seq1  TAAAAATAGGGAAAAACTTGGAAAATTTAGAAATACATATTATTTATCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGGGAAAAACTTGGAAAATTTAGAAATACATATTATTTATCCC  896

seq1  AACTAATATATGGGTATATTTCTTACCAAGCTTTCTACTTACTTGTTTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATATGGGTATATTTCTTACCAAGCTTTCTACTTACTTGTTTGG  946

seq1  ATGAGCTATAATTATATTGTGCCGAAACTATTGCACAAACTCCTATTAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATAATTATATTGTGCCGAAACTATTGCACAAACTCCTATTAAA  996

seq1  TTGATTTTTTTACAGATTGTAAAAGGCAATTAAAATTAGCTTAAAGTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTACAGATTGTAAAAGGCAATTAAAATTAGCTTAAAGTCTA  1046

seq1  CTTAAAACAGAGATAGTATAAAAATGACTTCAAATTTTATGCTGATTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACAGAGATAGTATAAAAATGACTTCAAATTTTATGCTGATTTAG  1096

seq1  AGATAATTCTTTCTGACCTATTCACACTACACTTGTGTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCTTTCTGACCTATTCACACTACACTTGTGTGAATTC  1140


seq1: chr2_44011762_44012895
seq2: B6Ng01-308M18.g_67_1204

seq1  GAATTCTCTCTGACTTCATGAGTCAGCCCATGTTCAAGGCAGAATATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGACTTCATGAGTCAGCCCATGTTCAAGGCAGAATATCTG  50

seq1  TATTTAAGTTGAGTTTTTGTGAAAGACTATAGGTCCATAGGAAGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTTGAGTTTTTGTGAAAGACTATAGGTCCATAGGAAGAAGAGA  100

seq1  GGAATTAAGTGTAGCCAGTGATCCATATATAGACAGTTTCACGTGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAGTGTAGCCAGTGATCCATATATAGACAGTTTCACGTGTGGTT  150

seq1  AAGGTTCAAGAACATACCATGGTGAGAGTTGTCAACTATATTCTGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAAGAACATACCATGGTGAGAGTTGTCAACTATATTCTGTTCTG  200

seq1  TCCAAGAGAGAAGGAAGAAAGTCCTTGATTTCAGATTCTATTGATACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGAGAAGGAAGAAAGTCCTTGATTTCAGATTCTATTGATACCAA  250

seq1  GAGAATGAAACATCTCTTCATCACATTTAAATGTATAGAGGCCCTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAAACATCTCTTCATCACATTTAAATGTATAGAGGCCCTGCATA  300

seq1  GGTCAAGGAAGATTTAGGACCCAGTGTAGAGCATTACACTCACCCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGAAGATTTAGGACCCAGTGTAGAGCATTACACTCACCCTGAGA  350

seq1  CAAATAGCATTGCATAAGTTGTGCCTGCAGAGCTGTAGATGATCCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCATTGCATAAGTTGTGCCTGCAGAGCTGTAGATGATCCCTTTA  400

seq1  CAATTCATTCTGGAACAAAAAATATTACGATGATAAGAACAAACCATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATTCTGGAACAAAAAATATTACGATGATAAGAACAAACCATGAT  450

seq1  TAAAAATGAATTGCATTTAGTCATCCTGAAAATACTCTTCTCTCTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAATTGCATTTAGTCATCCTGAAAATACTCTTCTCTCTCCAAA  500

seq1  TTTATACATATATTAAGAACACTTATTTCCTTTACCTTAGTTTATAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATATATTAAGAACACTTATTTCCTTTACCTTAGTTTATAACAA  550

seq1  AATAGAGGAATCCATGTAAAGAAATATTTGTAAAGTAGAAATCATTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGAATCCATGTAAAGAAATATTTGTAAAGTAGAAATCATTCTAT  600

seq1  TTTATTATTTTAAAGGCACCATCGCCCACCAATTTTCTTGCTCTGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTAAAGGCACCATCGCCCACCAATTTTCTTGCTCTGTGCCT  650

seq1  CCTTCAGTTTATTACCCCCATCTCTTATTGTCCACTGCCATCTCTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTTATTACCCCCATCTCTTATTGTCCACTGCCATCTCTCATAT  700

seq1  CACACCAGTTAACAACTCTTACTCTGTTTTTTTTCTACCCATTAGTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGTTAACAACTCTTACTCTGTTTTTTTTCTACCCATTAGTCATA  750

seq1  TTTTTCTCATGGAGGTATGATTTCAACACAAGAGAATAACCTTATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCATGGAGGTATGATTTCAACACAAGAGAATAACCTTATTTCCT  800

seq1  ATTGCAGAATATCACACATAAAAAGACATGTTTCAAGAAAGAGTTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAATATCACACATAAAAAGACATGTTTCAAGAAAGAGTTGTTTC  850

seq1  TTCATAATTCTGAAAATATAAATGAGTCCTCCATAATTGATCTTAAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTCTGAAAATATAAATGAGTCCTCCATAATTGATCTTAAGACT  900

seq1  TATTGTGGGGGCTTAGTAAATAACATTTAAGTATTCAGAATTGTGGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGGGGCTTAGTAAATAACATTTAAGTATTCAGAATTGTGGTCTT  950

seq1  TAATTTCTACTTTTGAATATTACCTCAAGAATCAGCTAGAGGAACTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTACTTTTGAATATTACCTCAAGAATCAGCTAGAGGAACTCATT  1000

seq1  GTGGATTTTCAAATATTCTCTCAA-GCCTCAGAGTATGTCAGTCCTT--G  1047
      |||||||||||||||||||||||| ||||||||||||||||||||||   
seq2  GTGGATTTTCAAATATTCTCTCAAGGCCTCAGAGTATGTCAGTCCTTTGA  1050

seq1  AGGAAAT-GGAAAAATTATACTATTCCTTAAATTTCAT-ATAAAGAAAAT  1095
      ||||||| ||||||||||||||||||||||||||  || |||||||||||
seq2  AGGAAATGGGAAAAATTATACTATTCCTTAAATTCAATAATAAAGAAAAT  1100

seq1  ATGAAATATAT-GTGAAACTTTTTTCTCAACACTGGAAAA  1134
      ||||||||||| ||||| |  ||||||||||||| |||||
seq2  ATGAAATATATGGTGAACC--TTTTCTCAACACTTGAAAA  1138


| Home | SequenceCutter | Blast | Download |