BAC Information

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BAC

Clone NameB6Ng01-310B09
Chromosome2 (Build37)
Map Location 82,573,396 - 82,694,684
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B09.bB6Ng01-310B09.g
ACCGA102162GA102163
length1,1661,129
definitionB6Ng01-310B09.b B6Ng01-310B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,573,396 - 82,574,070)(82,693,550 - 82,694,684)
sequence
gaattctcaactgaggaatactgatggctgagaagcaccgaaagaaatgt
ttaatatccttggtaaccagggaaatgaaaattaaaacaaccctgagatt
ccacctcacaccagtcagaatgggtaagaccaaaaactcaggtgacagca
gatgctggcgaggatatggagaaagagaaacacttctccattgctagtag
gattgtaagctggtacaaccattctggaaatcagtttggtggttcctcag
aaaactggaccagctataccactcctaggcatatacccagaagatctcta
acatgtaatatggacacatgttccactatgttcacagcagccttattttt
aacagtcataagctggaaagaacccagatgtccctcaatagaggaatgga
cacagaaagtgtggtacatttacacagtgcagtactactcagctatcaaa
agcaatgaattcatgaaattcttaggcaagtggatggacctacaaaatat
catccggagtgaggtaacccagtcacaaaagaacacacatagtaagcatt
cactgataagtggatattagcccaaaaatctcagaatacccaagatacaa
ttcacagaccacagaaagctcaagaagaaggaagaccaaaatgtggatat
ttcagtccttcttagaagagggaacaaaaactttaatttttttaaggtcc
tgtagttattgccacccttccaggtctgcccacatacagttccttgtctc
attcttcttgccccctaactccaagaggatttcccagcccccattcaacc
cccttccagaactacctacaccctggggcctcatctctagagagttaggc
acatcttctcccactgagaacagatcacgcagtcagggtcttggaccagc
ttgaatatgctgcctagttggtggctcagtgtctgagagatctcagtggc
ctgggttagttgaaactactggtcatcctatggggtgatattaataaagt
tactcattctgaacacagatatttgaatatatttgattttatgttattat
catgggtgtgtacacttatactgaattggataacttgttttattgagttt
gctgtgaaaagaacaccaatagttggagattatctaagcctacaagttac
attggtagccaattgc

gaattctctgtccctggatattccaggaagtcttgattttctttcctttc
taatttttgtgggacacaggctctaaggtgtttagtgttttttgctggtt
ctttgccattttcaaacccctgatatgttatttgaatttcaaaaaggttg
agagtttaatgcttatattactagttattttgcacgttttaattggcagt
gatctaatagactgagaactttggttttatattaacgttacttgatttct
cacatgaagctttaaggcaccttaagtgaaatcaactttggaattgtaaa
attggtcagaaatttacttgatgtgttttctttgaacagtataaaattaa
aagtcttttaaatactgaaatatgatattctgagtcctctcagactgtat
taacataatcagtcattactctaggtgctaaaaatatataaaaattaagg
tggattattaaggaaaaaatagaataatgaaacacaagcctatagtcatc
tatacatagtcattgacattgtccttggcaaaagtagaattattttgact
aaatttcattttatcctctattttcagtaatatttcttttcttgtccaag
aatttccttaagagtaaaaagatcttgtttttgtatttacagttatattt
tattacattaaactactgaggttctatttgaaatgagggcaaagaggact
ctaaattagtctcatgaaacatctttaattttagatctgcccttggggtc
taaattcagcaagtctcttgaccttctggtgtctgtttacaattgtcttt
gactttgtcttgtcatcagtatgattaaactcaaaggacctaattcaggc
tgctcaacctacttaagcactcattattcgttccatcagtcagtctactc
tagcttttgccaacctggtctatattcactgctcaagccagggacatctc
aatctcaggatcctcatactctgtctcctcctaatttaaatatattttca
ttgagatgcttttcctaactacctttaacgaaatgtttttcctcagtgca
caccttggttcttctgatctggcattttcacatagttctcattatgatgg
ataagtacaggaatgtccaccactagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82573396_82574070
seq2: B6Ng01-310B09.b_538_1213

seq1  TACAAAATATCATCCGGAGTGAGGTAACCCAGTCACAAAAGAACACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATCATCCGGAGTGAGGTAACCCAGTCACAAAAGAACACACAT  50

seq1  AGTAAGCATTCACTGATAAGTGGATATTAGCCCAAAAATCTCAGAATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCATTCACTGATAAGTGGATATTAGCCCAAAAATCTCAGAATACC  100

seq1  CAAGATACAATTCACAGACCACAGAAAGCTCAAGAAGAAGGAAGACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAATTCACAGACCACAGAAAGCTCAAGAAGAAGGAAGACCAAA  150

seq1  ATGTGGATATTTCAGTCCTTCTTAGAAGAGGGAACAAAAACTTTAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATATTTCAGTCCTTCTTAGAAGAGGGAACAAAAACTTTAATTTT  200

seq1  TTTAAGGTCCTGTAGTTATTGCCACCCTTCCAGGTCTGCCCACATACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCCTGTAGTTATTGCCACCCTTCCAGGTCTGCCCACATACAGT  250

seq1  TCCTTGTCTCATTCTTCTTGCCCCCTAACTCCAAGAGGATTTCCCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCTCATTCTTCTTGCCCCCTAACTCCAAGAGGATTTCCCAGCCC  300

seq1  CCATTCAACCCCCTTCCAGAACTACCTACACCCTGGGGCCTCATCTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAACCCCCTTCCAGAACTACCTACACCCTGGGGCCTCATCTCTAG  350

seq1  AGAGTTAGGCACATCTTCTCCCACTGAGAACAGATCAGGCAGTCAGGGTC  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGTTAGGCACATCTTCTCCCACTGAGAACAGATCACGCAGTCAGGGTC  400

seq1  TTGGACCAGCTTGAATATGCTGCCTAGTTGGTGGCTCAGTGTCTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCAGCTTGAATATGCTGCCTAGTTGGTGGCTCAGTGTCTGAGAGA  450

seq1  TCTCAGTGGCCTGGGTTAGTTGAAACTACTGGTCATCCTATGGGGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGGCCTGGGTTAGTTGAAACTACTGGTCATCCTATGGGGTGATA  500

seq1  TTAATAAAGTTACTCATTCTGAACACAGATATTTGAATAATATTTGATTT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTAATAAAGTTACTCATTCTGAACACAGATATTTGAAT-ATATTTGATTT  549

seq1  TATGTTATTATCATGGGTGTGTACCACTTATACTGAATTTGGAT-ACTTG  599
      ||||||||||||||||||||||| ||||||||||||| |||||| |||||
seq2  TATGTTATTATCATGGGTGTGTA-CACTTATACTGAA-TTGGATAACTTG  597

seq1  TTT--ATGAGTTTTGCTGTGAAA--GACAC--ATAGTTGGAGATTTATCC  643
      |||   |||| ||||||||||||   ||||  ||||||||||| |||| |
seq2  TTTTATTGAG-TTTGCTGTGAAAAGAACACCAATAGTTGGAGA-TTAT-C  644

seq1  TAGGCCTACAAGTTACA-TGGTAGCAAAATTGC  675
      || |||||||||||||| |||||||  ||||||
seq2  TAAGCCTACAAGTTACATTGGTAGC-CAATTGC  676


seq1: chr2_82693550_82694684
seq2: B6Ng01-310B09.g_67_1195 (reverse)

seq1  AATCTAGTGGT-GACATTTCTTGTAC-TATCCAATCATAATGAGAACTAT  48
      ||||||||||| |||| ||| ||||| ||||| |||||||||||||||||
seq2  AATCTAGTGGTGGACA-TTCCTGTACTTATCC-ATCATAATGAGAACTAT  48

seq1  GTTGAAAAATGCCCAGGATCAGAGAAACCAAGGTTGTTGGCACTGAGGAA  98
      ||   ||||||||   |||||||  |||||||| |||  |||||||||||
seq2  GT--GAAAATGCC--AGATCAGAAGAACCAAGG-TGT--GCACTGAGGAA  91

seq1  AAACA-TTCGTTAAAGGTAGTTAGGAAAAGCATCCTCAATGAAAATATAT  147
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACATTTCGTTAAAGGTAGTTAGGAAAAGCAT-CTCAATGAAAATATAT  140

seq1  TTAAATTAGGAGGAGACAGAGTATGAGGATCCTGAGATTGAGATGTCCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGGAGGAGACAGAGTATGAGGATCCTGAGATTGAGATGTCCCT  190

seq1  GGCTTGAGCAGTGAATATAGACCAGGTTGGCAAAAGCTAGAGTAGACTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGCAGTGAATATAGACCAGGTTGGCAAAAGCTAGAGTAGACTGA  240

seq1  CTGATGGAACGAATAATGAGTGCTTAAGTAGGTTGAGCAGCCTGAATTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAACGAATAATGAGTGCTTAAGTAGGTTGAGCAGCCTGAATTAG  290

seq1  GTCC-TTGAGTTTAATCATACTGATGACAAGACAAAGTCAAAGACAATTG  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGAGTTTAATCATACTGATGACAAGACAAAGTCAAAGACAATTG  340

seq1  TAAACAGACACCAGAAGGTCAAGAGACTTGCTGAATTTAGACCCCAAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGACACCAGAAGGTCAAGAGACTTGCTGAATTTAGACCCCAAGGG  390

seq1  CAGATCTAAAATTAAAGATGTTTCATGAGACTAATTTAGAGTCCTCTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTAAAATTAAAGATGTTTCATGAGACTAATTTAGAGTCCTCTTTG  440

seq1  CCCTCATTTCAAATAGAACCTCAGTAGTTTAATGTAATAAAATATAACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTTCAAATAGAACCTCAGTAGTTTAATGTAATAAAATATAACTG  490

seq1  TAAATACAAAAACAAGATCTTTTTACTCTTAAGGAAATTCTTGGACAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAAAACAAGATCTTTTTACTCTTAAGGAAATTCTTGGACAAGA  540

seq1  AAAGAAATATTACTGAAAATAGAGGATAAAATGAAATTTAGTCAAAATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATTACTGAAAATAGAGGATAAAATGAAATTTAGTCAAAATAA  590

seq1  TTCTACTTTTGCCAAGGACAATGTCAATGACTATGTATAGATGACTATAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTTGCCAAGGACAATGTCAATGACTATGTATAGATGACTATAG  640

seq1  GCTTGTGTTTCATTATTCTATTTTTTCCTTAATAATCCACCTTAATTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTTTCATTATTCTATTTTTTCCTTAATAATCCACCTTAATTTTT  690

seq1  ATATATTTTTAGCACCTAGAGTAATGACTGATTATGTTAATACAGTCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTAGCACCTAGAGTAATGACTGATTATGTTAATACAGTCTGA  740

seq1  GAGGACTCAGAATATCATATTTCAGTATTTAAAAGACTTTTAATTTTATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGAATATCATATTTCAGTATTTAAAAGACTTTTAATTTTATA  790

seq1  CTGTTCAAAGAAAACACATCAAGTAAATTTCTGACCAATTTTACAATTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAAGAAAACACATCAAGTAAATTTCTGACCAATTTTACAATTCC  840

seq1  AAAGTTGATTTCACTTAAGGTGCCTTAAAGCTTCATGTGAGAAATCAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATTTCACTTAAGGTGCCTTAAAGCTTCATGTGAGAAATCAAGT  890

seq1  AACGTTAATATAAAACCAAAGTTCTCAGTCTATTAGATCACTGCCAATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTAATATAAAACCAAAGTTCTCAGTCTATTAGATCACTGCCAATTA  940

seq1  AAACGTGCAAAATAACTAGTAATATAAGCATTAAACTCTCAACCTTTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGCAAAATAACTAGTAATATAAGCATTAAACTCTCAACCTTTTTG  990

seq1  AAATTCAAATAACATATCAGGGGTTTGAAAATGGCAAAGAACCAGCAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAATAACATATCAGGGGTTTGAAAATGGCAAAGAACCAGCAAAA  1040

seq1  AACACTAAACACCTTAGAGCCTGTGTCCCACAAAAATTAGAAAGGAAAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAACACCTTAGAGCCTGTGTCCCACAAAAATTAGAAAGGAAAGA  1090

seq1  AAATCAAGACTTCCTGGAATATCCAGGGACAGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGACTTCCTGGAATATCCAGGGACAGAGAATTC  1129


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