BAC Information

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BAC

Clone NameB6Ng01-310B17
Chromosome2 (Build37)
Map Location 96,938,291 - 97,112,239
singlet/doubletdoublet
Overlap geneLOC100043267
Upstream genenone
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B17.bB6Ng01-310B17.g
ACCGA102176GA102177
length1,0661,185
definitionB6Ng01-310B17.b B6Ng01-310B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,111,207 - 97,112,239)(96,938,291 - 96,939,471)
sequence
gaattcaagaacatagaattgaaaaaaaaaaccagctcccgacctataat
cttttatagactttgaataatggatagaagttagacaatctatcccaaaa
aaagcagtagatgagaaagatggtaagatcttatttgaagtggagaaaag
tccataaattctgtaatttgcttaaatacctttcatctgatagacatgct
acaaaatgttttctgacgtatcctttagggaacaacctagttaacatgca
gtttaataatcctggacaccaaagaatacacagtgcaaaaagtatgtatt
ggtacttcaaaataaaaacaacaataataacaggaacacctcttcactat
cccaagcttttctgttaaatcccagcaatatttcagtttggttcaggttt
taaggccacacaagtttctttttctccccatattgttgcattaattttca
gtggttcatcggtgatggggaaatatgaactggtgtaaattaagattctt
tttagctttgatcccatttagtgcttgccatgaataatgtgatttttaag
tagaaaagaagaatgccactgttagtactattgagctcgaggaatggtat
tccgagaagagccacactaactgcctttctctcaaagagctctatctgtc
tgcagcacatcatttttgttggcttgtttgttagcactacctccttaggt
tggaggtctgatcacattcattttcttctcaggatgtgatatttttttgt
tgtccctccagcacatataactgaagggaattgtcattttcttcctcaag
caagagaattcaaggtttggtgatttttttttttcttctgtagggatgta
ggaaatggttgagcccaaggatggcaacacccaaaataatctaggctttc
ccacatcaatttctttttgagagaatgcctccaatagatcttactaagac
agtttatcaattaagttcccttcttttaggtaactctagcttgtgtcaag
ttgagatgaaactagcccacataataataaataaataaataaataaataa
taaataaatagtactc

gaattctgttgaaacagaaggcaagcctctgtcaatcaccaggaaaactt
gccagcagcagaggcagtaggaacattgtgcttgagatcctttctgccct
gtgttaggacccctgtggaaatcctccctacaattcataaatcaggatac
acttagcgaattttcaaaataagaaatgttcttaggattatacaaggata
aagatttctcatttctctttggtttcataataaaagacttactctttgaa
agaaaagtttcccagggttaaccccgggctgcaaaataaacaaaaagaat
atggttttaagacaggttatgaatactttatgtttatagcaacttcacat
ttaccaacaatattttagtaaaacaaaaattatgaggatattctactgct
aataatcaaggagtatttatacatgacatgctttgtcttatgagaataga
ttttaacgtgtctttctgcataaaacaattagaaggaaaacaccaaactt
aaaacattccagattttgggggtctagtgaaaatatcctgtatgttattg
aatctgtagttgccaccaattttcataatagcaggacaaatactagttga
gatatacaataatgcatataaacagaaaataaactcattttataagtaaa
atttaaggctctgtgaagtatcagattaaaatgcatgttatatatattta
caatatctttaaaatatcattgattaaaaaccaaacgatctttataagac
acattatagtattactgtaaaataaaacaacattcattgtctaaaacaat
aacagagaaagcattttattaggaaaaaaattgctatatgtaaaagctat
ttgaatattatttttaagaagaccacatagagaggttatgttttatcttt
atttctctatttattttatagctctttctctttgagtaataacactgaaa
tatgtttctcacagtagagcagaacaaggcagagcagcagtgaagaactt
taaacgaaattcactgggaaacagagaattttttcacaaagtacttttgt
tgatttgcaaaggtcacatagatattttaattttaaatgatcaaaataaa
agaacagtattctttgttccaccatcattttgatttgttaaggggagttt
ggcaatgaatgttgttccatgactagtccacactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_97111207_97112239
seq2: B6Ng01-310B17.b_45_1104 (reverse)

seq1  -----------------------TATTTAT---TTATTATGTTGGCTAGT  24
                             |||||||   ||||||||| |||||||
seq2  TATTTATTTATTATTTATTTATTTATTTATTTATTATTATGTGGGCTAGT  50

seq1  TTCATCTCAACTTGACACAAGCTAGAGTTACCTAAAAGAAGGGAACTTAA  74
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCAACTTGACACAAGCTAGAGTTACCTAAAAGAAGGGAACTTAA  100

seq1  TTGATAAACTGTCTTAGTAAGATCTATTGGAGGGCATTCTCTCAAAAAGA  124
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGATAAACTGTCTTAGTAAGATCTATTGGA-GGCATTCTCTCAAAAAGA  149

seq1  AATTGATGTGGGAAAGCCTAGATTATTTTGGGTGTTGCCATCCTTGGGCT  174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGTGGGAAAGCCTAGATTATTTTGGGTGTTGCCATCCTTGGGCT  199

seq1  CAACCA-TTCCTACATCCCTACAGAAG-AAAAAAAAAATCACCAAACCTT  222
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CAACCATTTCCTACATCCCTACAGAAGAAAAAAAAAAATCACCAAACCTT  249

seq1  GAATTCTCTTGCTTGAGGAAGAAAATGACAATTCCCTTCAGTTATATGTG  272
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTTGAGGAAGAAAATGACAATTCCCTTCAGTTATATGTG  299

seq1  CTGGAGGGACAACAAAAAAATATCACATCCTGAGAAGAAAATGAATGTGA  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGACAACAAAAAAATATCACATCCTGAGAAGAAAATGAATGTGA  349

seq1  TCAGACCTCCAACCTAAGGAGGTAGTGCTAACAAACAAGCCAACAAAAAT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCCAACCTAAGGAGGTAGTGCTAACAAACAAGCCAACAAAAAT  399

seq1  GATGTGCTGCAGACAGATAGAGCTCTTTGAGAGAAAGGCAGTTAGTGTGG  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTGCAGACAGATAGAGCTCTTTGAGAGAAAGGCAGTTAGTGTGG  449

seq1  CTCTTCTCGGAATACCATTCCTCGAGCTCAATAGTACTAACAGTGGCATT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCGGAATACCATTCCTCGAGCTCAATAGTACTAACAGTGGCATT  499

seq1  CTTCTTTTCTACTTAAAAATCACATTATTCATGGCAAGCACTAAATGGGA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCTACTTAAAAATCACATTATTCATGGCAAGCACTAAATGGGA  549

seq1  TCAAAGCTAAAAAGAATCTTAATTTACACCAGTTCATATTTCCCCATCAC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTAAAAAGAATCTTAATTTACACCAGTTCATATTTCCCCATCAC  599

seq1  CGATGAACCACTGAAAATTAATGCAACAATATGGGGAGAAAAAGAAACTT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAACCACTGAAAATTAATGCAACAATATGGGGAGAAAAAGAAACTT  649

seq1  GTGTGGCCTTAAAACCTGAACCAAACTGAAATATTGCTGGGATTTAACAG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCTTAAAACCTGAACCAAACTGAAATATTGCTGGGATTTAACAG  699

seq1  AAAAGCTTGGGATAGTGAAGAGGTGTTCCTGTTATTATTGTTGTTTTTAT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGGGATAGTGAAGAGGTGTTCCTGTTATTATTGTTGTTTTTAT  749

seq1  TTTGAAGTACCAATACATACTTTTTGCACTGTGTATTCTTTGGTGTCCAG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTACCAATACATACTTTTTGCACTGTGTATTCTTTGGTGTCCAG  799

seq1  GATTATTAAACTGCATGTTAACTAGGTTGTTCCCTAAAGGATACGTCAGA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAAACTGCATGTTAACTAGGTTGTTCCCTAAAGGATACGTCAGA  849

seq1  AAACATTTTGTAGCATGTCTATCAGATGAAAGGTATTTAAGCAAATTACA  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGTAGCATGTCTATCAGATGAAAGGTATTTAAGCAAATTACA  899

seq1  GAATTTATGGACTTTTCTCCACTTCAAATAAGATCTTACCATCTTTCTCA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATGGACTTTTCTCCACTTCAAATAAGATCTTACCATCTTTCTCA  949

seq1  TCTACTGCTTTTTTTGGGATAGATTGTCTAACTTCTATCCATTATTCAAA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTTTTTTTGGGATAGATTGTCTAACTTCTATCCATTATTCAAA  999

seq1  GTCTATAAAAGATTATAGGTCGGGAGCTGGTTTTTTTTTTCAATTCTATG  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAAAGATTATAGGTCGGGAGCTGGTTTTTTTTTTCAATTCTATG  1049

seq1  TTCTTGAATTC  1033
      |||||||||||
seq2  TTCTTGAATTC  1060


seq1: chr2_96938291_96939471
seq2: B6Ng01-310B17.g_65_1249

seq1  GAATTCTGTTGAAACAGAAGGCAAGCCTCTGTCAATCACCAGGAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAAACAGAAGGCAAGCCTCTGTCAATCACCAGGAAAACTT  50

seq1  GCCAGCAGCAGAGGCAGTAGGAACATTGTGCTTGAGATCCTTTCTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGCAGAGGCAGTAGGAACATTGTGCTTGAGATCCTTTCTGCCCT  100

seq1  GTGTTAGGACCCCTGTGGAAATCCTCCCTACAATTCATAAATCAGGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGACCCCTGTGGAAATCCTCCCTACAATTCATAAATCAGGATAC  150

seq1  ACTTAGCGAATTTTCAAAATAAGAAATGTTCTTAGGATTATACAAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCGAATTTTCAAAATAAGAAATGTTCTTAGGATTATACAAGGATA  200

seq1  AAGATTTCTCATTTCTCTTTGGTTTCATAATAAAAGACTTACTCTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTCATTTCTCTTTGGTTTCATAATAAAAGACTTACTCTTTGAA  250

seq1  AGAAAAGTTTCCCAGGGTTAACCCCGGGCTGCAAAATAAACAAAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTTCCCAGGGTTAACCCCGGGCTGCAAAATAAACAAAAAGAAT  300

seq1  ATGGTTTTAAGACAGGTTATGAATACTTTATGTTTATAGCAACTTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAAGACAGGTTATGAATACTTTATGTTTATAGCAACTTCACAT  350

seq1  TTACCAACAATATTTTAGTAAAACAAAAATTATGAGGATATTCTACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACAATATTTTAGTAAAACAAAAATTATGAGGATATTCTACTGCT  400

seq1  AATAATCAAGGAGTATTTATACATGACATGCTTTGTCTTATGAGAATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAAGGAGTATTTATACATGACATGCTTTGTCTTATGAGAATAGA  450

seq1  TTTTAACGTGTCTTTCTGCATAAAACAATTAGAAGGAAAACACCAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACGTGTCTTTCTGCATAAAACAATTAGAAGGAAAACACCAAACTT  500

seq1  AAAACATTCCAGATTTTGGGGGTCTAGTGAAAATATCCTGTATGTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCCAGATTTTGGGGGTCTAGTGAAAATATCCTGTATGTTATTG  550

seq1  AATCTGTAGTTGCCACCAATTTTCATAATAGCAGGACAAATACTAGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTAGTTGCCACCAATTTTCATAATAGCAGGACAAATACTAGTTGA  600

seq1  GATATACAATAATGCATATAAACAGAAAATAAACTCATTTTATAAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAATAATGCATATAAACAGAAAATAAACTCATTTTATAAGTAAA  650

seq1  ATTTAAGGCTCTGTGAAGTATCAGATTAAAATGCATGTTATATATATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGCTCTGTGAAGTATCAGATTAAAATGCATGTTATATATATTTA  700

seq1  CAATATCTTTAAAATATCATTGATTAAAAACCAAACGATCTTTATAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTTAAAATATCATTGATTAAAAACCAAACGATCTTTATAAGAC  750

seq1  ACATTATAGTATTACTGTAAAATAAAACAACATTCATTGTCTAAAACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATAGTATTACTGTAAAATAAAACAACATTCATTGTCTAAAACAAT  800

seq1  AACAGAGAAAGCATTTTATTAGGAAAAAAATTGCTATATGTAAAAGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAAGCATTTTATTAGGAAAAAAATTGCTATATGTAAAAGCTAT  850

seq1  TTGAATATTATTTTTAAGAAGACCACATAGAGAGGTTATGTTTTATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTATTTTTAAGAAGACCACATAGAGAGGTTATGTTTTATCTTT  900

seq1  ATTTCTCTATTTATTTTATAGCTCTTTCTCTTTGAGTAATAACACTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTATTTATTTTATAGCTCTTTCTCTTTGAGTAATAACACTGAAA  950

seq1  TATGTTTCTCACAGTAGAGCAGAACAAGGCAGAGCAGCAGTGAAG-ACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATGTTTCTCACAGTAGAGCAGAACAAGGCAGAGCAGCAGTGAAGAACTT  1000

seq1  TAAACG-AATTCACTGGGATACAGAGAA-TCTTTCACAAAGTAC-TTTGT  1046
      |||||| |||||||||||| |||||||| | ||||||||||||| |||||
seq2  TAAACGAAATTCACTGGGAAACAGAGAATTTTTTCACAAAGTACTTTTGT  1050

seq1  TGATTTGCAAAGGTAAACATAGAATATATAAAAATTTAAATGAATCAAAA  1096
      ||||||||||||||  |||||| |||| |  || |||||||| |||  ||
seq2  TGATTTGCAAAGGT-CACATAG-ATAT-TTTAATTTTAAATG-ATC--AA  1094

seq1  AATAAAAGAACAGTAT--CTTGTTCCACCATCATTTTGATTTGT--AAGG  1142
      ||||||||||||||||   |||||||||||||||||||||||||  | ||
seq2  AATAAAAGAACAGTATTCTTTGTTCCACCATCATTTTGATTTGTTAAGGG  1144

seq1  GAGTTTTGCAGTG-ATGTTGTT-CATGACTAGCCCACACTC  1181
      |||||| ||| || |||||||| ||||||||| ||||||||
seq2  GAGTTTGGCAATGAATGTTGTTCCATGACTAGTCCACACTC  1185


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