BAC Information

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BAC

Clone NameB6Ng01-310E18
Chromosome2 (Build37)
Map Location 78,303,703 - 78,304,804
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310E18.bB6Ng01-310E18.g
ACCGA102313GA102314
length1,2081,096
definitionB6Ng01-310E18.b B6Ng01-310E18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccaataccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatattttatattat
ttgtggctattgagaagggtgttgtttccctaatttcttctcagcctgtt
attctttgtgtagagaaggcattgacttgtttgaagttaattttatatcc
agctactcacgaagctgttttatcaaggtttagaagttcttctgttggga
atttttagggtcacttatatatactatccatatccatcctggcaaaggtg
aatttgggaccttctctttcgattgatatgcccctgagatcttccctctt
atgttggc
gaattcccatggtatggtctccagaaccaaagtttcacccatgtttccct
cagatctaagttggctttaaggccaaagcacttgaacctattagaggttc
aaagacattgtttagtcttcagaaataacacattacaatgcccaagggag
tacattataaacttatgccatggcttttaagagggagaataaaacccagg
tgggtgctttcaggatagtgcttgaagtttgaaaaagctaagaaatgaca
agtattaaaagagaacactgaagttcaggaactctacaagagaaaaacat
acatcttataacttaccttgaggctggacttgtacaggacgacttgactc
gatatcaagcttggtggtatactgtaggtcatattttttaaaaattggtt
ttgaagaaaacaagtagaaataatgccatatgcttcggttagagtggtct
ctgtttaaatagtaacaactcaagtttcctgacttgtagactatattgct
gaactatctacaatgttaaccactcactactgtttaaataatttaaatga
aaaaaaaacagtttttaagtcactcttgctacatctcaggcgttggacaa
ggttcaatcattacataaacctcatgactcccaaggtggacagtgaatgc
acatctgaagtcttgccatatttgcagaaagttctgtcagacagcccaac
ccttaaacttcctaactattgtaataatctgatctttaccatttgaaaat
ttaactttattagagattcaaaatgaaagacaagtgtcagttacattttg
cccgtcacaagggcactaaaatatcttaactgccgtcatccagagttggt
cttagcattacttcccaataaagctttgatattccctctgtttgtatatt
ggtgaagaggaggatcatatataaggttataaatcatggtactctgttct
caaatgtgaacagttccatctcccatacaaacactacagactcagttcga
ctcagaatagctatgtgtcccagacatgtgtgccatccagacagagcaca
tcacatcacaaaatacaactctgtcatctgcattggtttgatatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78303703_78304804
seq2: B6Ng01-310E18.g_68_1163

seq1  GAATTCCCATGGTATGGTCTCCAGAACCAAAGTTTCACCCATGTTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGGTATGGTCTCCAGAACCAAAGTTTCACCCATGTTTCCCT  50

seq1  CAGATCTAAGTTGGCTTTAAGGCCAAAGCACTTGAACCTATTAGAGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTAAGTTGGCTTTAAGGCCAAAGCACTTGAACCTATTAGAGGTTC  100

seq1  AAAGACATTGTTTAGTCTTCAGAAATAACACATTACAATGCCCAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTGTTTAGTCTTCAGAAATAACACATTACAATGCCCAAGGGAG  150

seq1  TACATTATAAACTTATGCCATGGCTTTTAAGAGGGAGAATAAAACCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATAAACTTATGCCATGGCTTTTAAGAGGGAGAATAAAACCCAGG  200

seq1  TGGGTGCTTTCAGGATAGTGCTTGAAGTTTGAAAAAGCTAAGAAATGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTTCAGGATAGTGCTTGAAGTTTGAAAAAGCTAAGAAATGACA  250

seq1  AGTATTAAAAGAGAACACTGAAGTTCAGGAACTCTACAAGAGAAAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAAAGAGAACACTGAAGTTCAGGAACTCTACAAGAGAAAAACAT  300

seq1  ACATCTTATAACTTACCTTGAGGCTGGACTTGTACAGGACGACTTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATAACTTACCTTGAGGCTGGACTTGTACAGGACGACTTGACTC  350

seq1  GATATCAAGCTTGGTGGTATACTGTAGGTCATATTTTTTAAAAATTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAAGCTTGGTGGTATACTGTAGGTCATATTTTTTAAAAATTGGTT  400

seq1  TTGAAGAAAACAAGTAGAAATAATGCCATATGCTTCGGTTAGAGTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAACAAGTAGAAATAATGCCATATGCTTCGGTTAGAGTGGTCT  450

seq1  CTGTTTAAATAGTAACAACTCAAGTTTCCTGACTTGTAGACTATATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAATAGTAACAACTCAAGTTTCCTGACTTGTAGACTATATTGCT  500

seq1  GAACTATCTACAATGTTAACCACTCACTACTGTTTAAATAATTTAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCTACAATGTTAACCACTCACTACTGTTTAAATAATTTAAATGA  550

seq1  AAAAAAAACAGTTTTTAAGTCACTCTTGCTACATCTCAGGCGTTGGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAGTTTTTAAGTCACTCTTGCTACATCTCAGGCGTTGGACAA  600

seq1  GGTTCAATCATTACATAAACCTCATGACTCCCAAGGTGGACAGTGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATCATTACATAAACCTCATGACTCCCAAGGTGGACAGTGAATGC  650

seq1  ACATCTGAAGTCTTGCCATATTTGCAGAAAGTTCTGTCAGACAGCCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAGTCTTGCCATATTTGCAGAAAGTTCTGTCAGACAGCCCAAC  700

seq1  CCTTAAACTTCCTAACTATTGTAATAATCTGATCTTTACCATTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTCCTAACTATTGTAATAATCTGATCTTTACCATTTGAAAAT  750

seq1  TTAACTTTATTAGAGATTCAAAATGAAAGACAAGTGTCAGTTACATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTATTAGAGATTCAAAATGAAAGACAAGTGTCAGTTACATTTTG  800

seq1  CCCGTCACAAGGGCACTAAAATATCTTAACTGCCGTCATCCAGAGTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCACAAGGGCACTAAAATATCTTAACTGCCGTCATCCAGAGTTGGT  850

seq1  CTTAGCATTACTTCCCAATAAAGCTTTGATATTCCCTCTGTTTGTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATTACTTCCCAATAAAGCTTTGATATTCCCTCTGTTTGTATATT  900

seq1  GGTGAAGAAGAGGATCATATATAAGGTTATAAATCATGGTACTCTGTTCT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAGGAGGATCATATATAAGGTTATAAATCATGGTACTCTGTTCT  950

seq1  CAAATGTGAACAG-TCCATCTCCCATACAAACACTACAGACTCAGGTCGA  999
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  CAAATGTGAACAGTTCCATCTCCCATACAAACACTACAGACTCAGTTCGA  1000

seq1  CTCAG-ATAGCTATGTGTCCCAGGACATGTGTGCCATCCAGACAAGAAGC  1048
      ||||| |||||||||||||||| |||||||||||||||||||||   |||
seq2  CTCAGAATAGCTATGTGTCCCA-GACATGTGTGCCATCCAGACA--GAGC  1047

seq1  ACATCACCATCAC-AAATACAACCTCCTGTCATTCTGCATTTGGTTTGGA  1097
      |||||| |||||| |||||||||   |||||| |||||| ||||||| ||
seq2  ACATCA-CATCACAAAATACAAC--TCTGTCA-TCTGCA-TTGGTTT-GA  1091

seq1  TATGA  1102
      |||||
seq2  TATGA  1096