BAC Information

Click to search

BAC

Clone NameB6Ng01-310O16
Chromosome2 (Build37)
Map Location 31,794,456 - 31,962,830
singlet/doubletdoublet
Overlap geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3
Upstream geneTor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1
Downstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310O16.bB6Ng01-310O16.g
ACCGA102767GA102768
length1,1341,094
definitionB6Ng01-310O16.b B6Ng01-310O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,794,456 - 31,795,603)(31,961,745 - 31,962,830)
sequence
gaattctcttcatgggtgcttaaactcccgaagggctgacttgaaactgg
gagttctaggtgcagtttcttgtcccacaactcctcttccctctctccgg
acctcttgtttcctcatctataaaataggtagaatttctccactaaggag
gaataaggagtttatagtaatttgtactgggaacacatctcatctccagt
gcatacctgttgactgtgggaatgaatgagtgaatgagtgagtgagttct
agattatgaagtaagtacactgcttggcattgtgtcgtaaaagatgttgt
ccaagccagacctagtggtacaagcctatatcccagctactttgagggct
gattcaggagtatcacaaatccagggctggcctaggtaacttagagaact
cctatttcaaaacaaaatataggaacaggtcctggcatgcggatcagctg
taaagtacttaccaagcatgtctgagactctggtttccaccttcaatacc
gaaaaagaaaaacaaagaacaacgttcctctttcccaaagggctcattct
tcccatccccgctgctgtcttgcagctctccagagctttgctgagggaag
gcaagcagggctaccgtcatgccagccgactcgccagccagacccaggcc
acactccgtcgggcctctcgcctgctgctgacctcagaagcacacaagca
ggagctggaggaagctaaacaggtgggtgtgtgcagcccattccccctgt
gcccagtgtctttgttagcattgtcgttactgcgagaaacaccatgacca
aagcaacttgggaaggaaaggatttattccacttgtatttccagatagca
atccatcaccaagggaagtcagaacaggaactcaagcacggcaagaacta
ggaggcaggagctgatgcagaggccatagaggggggctgcttactggctt
gctcccatggcttgcttagcctgctgtctatagcaccattctggttgata
ccagcagcatgcctggcccacccacatcatactataggaagtcatagggc
tggagagatggctcagtatttagaacatttttctgttctgcttagagtct
gagtcaattccagccacccacattggtgctcaca

gaattcctaggacctccagcactctgtgcaaagccggaaaatccctgcct
caaaagcctggcccatcaaaagcttgggtttggtagtgaccattactgga
ggacaccttgccaggatcctgactctaaaacccctcggtgtatggcaatg
gctgggctctcagtcatcactttcatgggaataggaaaggacagagttag
ggtgcagctcagtgacagagaatgggtttgtcatgtacaggaacccagct
tccatccccagcatatgggggaggggatttgatggtggactagatgtagt
aacgcatgcctgttatcttagccctctgtaagttgaggcaggtggataat
gaatttgagaccagcctgggctacatgatgagaccttgtttcacaagacc
cagcaaacaagttggaacagctattggcttccacacccaaattcccgggt
agagttggttctggagatggaccagtgtgtgctagacctggggtcaaaca
gggtggccaagctccttatagccaagggggagatggatagtcaccaaatg
gttgcacagagcagtgttattacagcctgtgggaaagtgcctcggtagat
agcagctgcctatggggctgtgaggaagctgtggagctgccttctcaatg
cacaggctagaacaactcttccccagctttctctggttggccagccctgg
gtgtggccattctttgtccagtaacctggaaccagaaatggaaacaaagg
ttgccatcactcgaggctctgaggaacccagctttgccttgggtaaacca
cccgacacctcacttagatcacagtggggtaaaggagcttcccacttggg
agaggctcgagctggagaaagctgtttgcctttgatctgtgtgggcttga
aagatcagttttactcctttgggcctccacgtactggaggttcagcatgt
ctcagcaatggcatgtacccatggaaagaagaccagatctaacttgccgc
ttgcagagactgaactctgccatctctctccagctccaatcccttgtttc
atacttcatagggagcaaataggaaccttgtttgagggcatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31794456_31795603
seq2: B6Ng01-310O16.b_48_1181

seq1  GAATTCTCTTCATGGGTGCTTAAACTCCCGAAGGGCTGACTTGAAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCATGGGTGCTTAAACTCCCGAAGGGCTGACTTGAAACTGG  50

seq1  GAGTTCTAGGTGCAGTTTCTTGTCCCACAACTCCTCTTCCCTCTCTCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGGTGCAGTTTCTTGTCCCACAACTCCTCTTCCCTCTCTCCGG  100

seq1  ACCTCTTGTTTCCTCATCTATAAAATAGGTAGAATTTCTCCACTAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGTTTCCTCATCTATAAAATAGGTAGAATTTCTCCACTAAGGAG  150

seq1  GAATAAGGAGTTTATAGTAATTTGTACTGGGAACACATCTCATCTCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAGTTTATAGTAATTTGTACTGGGAACACATCTCATCTCCAGT  200

seq1  GCATACCTGTTGACTGTGGGAATGAATGAGTGAATGAGTGAGTGAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTGTTGACTGTGGGAATGAATGAGTGAATGAGTGAGTGAGTTCT  250

seq1  AGATTATGAAGTAAGTACACTGCTTGGCATTGTGTCGTAAAAGATGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGAAGTAAGTACACTGCTTGGCATTGTGTCGTAAAAGATGTTGT  300

seq1  CCAAGCCAGACCTAGTGGTACAAGCCTATATCCCAGCTACTTTGAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGACCTAGTGGTACAAGCCTATATCCCAGCTACTTTGAGGGCT  350

seq1  GATTCAGGAGTATCACAAATCCAGGGCTGGCCTAGGTAACTTAGAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGAGTATCACAAATCCAGGGCTGGCCTAGGTAACTTAGAGAACT  400

seq1  CCTATTTCAAAACAAAATATAGGAACAGGTCCTGGCATGCGGATCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCAAAACAAAATATAGGAACAGGTCCTGGCATGCGGATCAGCTG  450

seq1  TAAAGTACTTACCAAGCATGTCTGAGACTCTGGTTTCCACCTTCAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACTTACCAAGCATGTCTGAGACTCTGGTTTCCACCTTCAATACC  500

seq1  GAAAAAGAAAAACAAAGAACAACGTTCCTCTTTCCCAAAGGGCTCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAACAAAGAACAACGTTCCTCTTTCCCAAAGGGCTCATTCT  550

seq1  TCCCATCCCCGCTGCTGTCTTGCAGCTCTCCAGAGCTTTGCTGAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCCCGCTGCTGTCTTGCAGCTCTCCAGAGCTTTGCTGAGGGAAG  600

seq1  GCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCC  650

seq1  ACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCA  700

seq1  GGAGCTGGAGGAAGCTAAACAGGTGGGTGTGTGCAGCCCATTCCCCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGGAAGCTAAACAGGTGGGTGTGTGCAGCCCATTCCCCCTGT  750

seq1  GCCCAGTGTCTTTGTTAGCATTGTCGTTACTGCGAGAAACACCATGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTCTTTGTTAGCATTGTCGTTACTGCGAGAAACACCATGACCA  800

seq1  AAGCAACTTGGGAAGGAAAGGATTTATTCCACTTGTATTTCCAGATAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTGGGAAGGAAAGGATTTATTCCACTTGTATTTCCAGATAGCA  850

seq1  ATCCATCACCAAGGGAAGTCAGAACAGGAACTCAAGCAGGGCAAGAACTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCATCACCAAGGGAAGTCAGAACAGGAACTCAAGCACGGCAAGAACTA  900

seq1  GGAGGCAGGAGCTGATGCAGAGGCCATAGAGGGGGGCTGCTTACTGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGAGCTGATGCAGAGGCCATAGAGGGGGGCTGCTTACTGGCTT  950

seq1  GCTCCCCATGGCTTGCTTAGCCTGCTGTCTTATAGCACCATTCTGGGTTG  1000
      ||| ||||||||||||||||||||||||| |||||||||||||| |||||
seq2  GCT-CCCATGGCTTGCTTAGCCTGCTGTC-TATAGCACCATTCT-GGTTG  997

seq1  ATACCAGCAAGCATGCCTGGGCCCACCCACATCAATACTAATTAGGAAAA  1050
      |||||||| ||||||||| |||||||||||||| ||||||  ||||||  
seq2  ATACCAGC-AGCATGCCT-GGCCCACCCACATC-ATACTA--TAGGAA--  1040

seq1  TTCCATAGGGGCTGGAGAGATGGCTCAGTATTTAAGAACA-TTTTCTGTT  1099
         |||| ||||||||||||||||||||||||| |||||| |||||||||
seq2  -GTCATA-GGGCTGGAGAGATGGCTCAGTATTT-AGAACATTTTTCTGTT  1087

seq1  CTGC-TAGAGGTCCTGAGTTCAATTTCCAG-CAACCACATGGTGGCTCAC  1147
      |||| |||||   ||||| |||| |||||| || |||||| |  ||||||
seq2  CTGCTTAGAG--TCTGAG-TCAA-TTCCAGCCACCCACATTGGTGCTCAC  1133

seq1  A  1148
      |
seq2  A  1134


seq1: chr2_31961745_31962830
seq2: B6Ng01-310O16.g_69_1162 (reverse)

seq1  GCCA-GCCCTCAAAACAGGGTCCTTGTTGCTCCCTATG-AGTATG-AACA  47
      |||| |||||||||  ||| ||||  |||||||||||| |||||| ||||
seq2  GCCATGCCCTCAAACAAGGTTCCTATTTGCTCCCTATGAAGTATGAAACA  50

seq1  AGGGATGGGAGCCGGGAGGAGATGGCAGAGTTCATGTCTTCTGCAAGCGG  97
      |||||| ||||| ||   |||||||||||||||| ||| |||||||||||
seq2  AGGGATTGGAGCTGGAGAGAGATGGCAGAGTTCA-GTC-TCTGCAAGCGG  98

seq1  CAAGTTTGAATCTGGTC-TCTTTCCTTGGGTCCCTGCC-CTGCTG-GACC  144
      |||||| | |||||||| ||||||| ||||| | ||||  ||||| ||| 
seq2  CAAGTTAG-ATCTGGTCTTCTTTCCATGGGTACATGCCATTGCTGAGACA  147

seq1  TGCTGGACCT-CAGTACGTGGAGGCCC-AAGGAGT-AAACTGATCTTTTC  191
      ||||| |||| |||||||||||||||| ||||||| ||||||||| ||||
seq2  TGCTGAACCTCCAGTACGTGGAGGCCCAAAGGAGTAAAACTGATC-TTTC  196

seq1  AAGCCCACACAGATCAAAGGCAGACAGCTTTCTCCAGCTCGAGCCTCTCC  241
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  AAGCCCACACAGATCAAAGGCAAACAGCTTTCTCCAGCTCGAGCCTCT-C  245

seq1  CCAAGTGGGAAGCTCC-TTACCCCACTGTGATCTAAGTGAGGTGTCGGGT  290
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAAGTGGGAAGCTCCTTTACCCCACTGTGATCTAAGTGAGGTGTCGGGT  295

seq1  GGTTTACCCAAGGC-AAGCTGGGTT-CTCAGAGCCTCGAGTGATGGCAAC  338
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GGTTTACCCAAGGCAAAGCTGGGTTCCTCAGAGCCTCGAGTGATGGCAAC  345

seq1  CTTTGTTTCCATTTCTGGTTCCAGGTTACTGGAC-AAGAATGGCCACACC  387
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTGTTTCCATTTCTGGTTCCAGGTTACTGGACAAAGAATGGCCACACC  395

seq1  CAGGGCTGGCCAACCAGAGAAAGCTGGGGAAGAGTTGTTCTAGCCTGTGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGCCAACCAGAGAAAGCTGGGGAAGAGTTGTTCTAGCCTGTGC  445

seq1  ATTGAGAAGGCAGCTCCACAGCTTCCTCACAGCCCCATAGGCAGCTGCTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAGGCAGCTCCACAGCTTCCTCACAGCCCCATAGGCAGCTGCTA  495

seq1  TCTACCGAGGCACTTTCCCACAGGCTGTAATAACACTGCTCTGTGCAACC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCGAGGCACTTTCCCACAGGCTGTAATAACACTGCTCTGTGCAACC  545

seq1  ATTTGGTGACTATCCATCTCCCCCTTGGCTATAAGGAGCTTGGCCACCCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGACTATCCATCTCCCCCTTGGCTATAAGGAGCTTGGCCACCCT  595

seq1  GTTTGACCCCAGGTCTAGCACACACTGGTCCATCTCCAGAACCAACTCTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCCCAGGTCTAGCACACACTGGTCCATCTCCAGAACCAACTCTA  645

seq1  CCCGGGAATTTGGGTGTGGAAGCCAATAGCTGTTCCAACTTGTTTGCTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGAATTTGGGTGTGGAAGCCAATAGCTGTTCCAACTTGTTTGCTGG  695

seq1  GTCTTGTGAAACAAGGTCTCATCATGTAGCCCAGGCTGGTCTCAAATTCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGAAACAAGGTCTCATCATGTAGCCCAGGCTGGTCTCAAATTCA  745

seq1  TTATCCACCTGCCTCAACTTACAGAGGGCTAAGATAACAGGCATGCGTTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACCTGCCTCAACTTACAGAGGGCTAAGATAACAGGCATGCGTTA  795

seq1  CTACATCTAGTCCACCATCAAATCCCCTCCCCCATATGCTGGGGATGGAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTAGTCCACCATCAAATCCCCTCCCCCATATGCTGGGGATGGAA  845

seq1  GCTGGGTTCCTGTACATGACAAACCCATTCTCTGTCACTGAGCTGCACCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTCCTGTACATGACAAACCCATTCTCTGTCACTGAGCTGCACCC  895

seq1  TAACTCTGTCCTTTCCTATTCCCATGAAAGTGATGACTGAGAGCCCAGCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGTCCTTTCCTATTCCCATGAAAGTGATGACTGAGAGCCCAGCC  945

seq1  ATTGCCATACACCGAGGGGTTTTAGAGTCAGGATCCTGGCAAGGTGTCCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATACACCGAGGGGTTTTAGAGTCAGGATCCTGGCAAGGTGTCCT  995

seq1  CCAGTAATGGTCACTACCAAACCCAAGCTTTTGATGGGCCAGGCTTTTGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGGTCACTACCAAACCCAAGCTTTTGATGGGCCAGGCTTTTGA  1045

seq1  GGCAGGGATTTTCCGGCTTTGCACAGAGTGCTGGAGGTCCTAGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGATTTTCCGGCTTTGCACAGAGTGCTGGAGGTCCTAGGAATTC  1094


| Home | SequenceCutter | Blast | Download |