BAC Information

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BAC

Clone NameB6Ng01-310P01
Chromosome2 (Build37)
Map Location 91,314,088 - 91,436,762
singlet/doubletdoublet
Overlap geneLrp4, LOC619941, Ckap5
Upstream genePtprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik
Downstream geneF2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310P01.bB6Ng01-310P01.g
ACCGA102783GA102784
length862698
definitionB6Ng01-310P01.b B6Ng01-310P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,435,910 - 91,436,762)(91,314,088 - 91,314,785)
sequence
gaattctttttgcaacatactgacaaggcgtacagagaagtgtcacttac
atttccaatcagtttgaacacctgatctccatgcacgttgtacactgtta
caatggtgttgagggcagcattccgtacagcattgtctcggtctcctatg
tgaatagctatctcctttaaggcttttcctggggttggctgacaaacatt
cataccataggactcaattaagcaacctagctcttccaggcactctattg
gggaagaaagaatagattaatgaaactcaaaaaaatatggtatagaagct
tctacaacttttctttggcacacaggaagtgacaaatcttattctgggtc
tttttagatttttctgtcatttacactgtcatatatgagacaatggtgtt
ataagtgttcatgacaaggtatgcctgtgagtcagatggcccctgtgcac
ttgattttgtcaccagggtagtactgagtggtgcctgtatcacctgatac
tatggctccaccagtgtgcaactcatcactctcacagtttgaagaagaaa
attggaatcaactacacagacactgaagaaatttcactgctcatttataa
atgacttcttgagactcacttatgcaaagacttgcaccttaacttcaatt
ttgggggaaagggggtgggttgagaaatatagctcactgtagagaacttg
cctagcacgtatgggactctgagctcagctctcagcaaactctagaaaga
tagattggacacaatatatatatgtttttgctatacctgctctctgcttt
aaagatttttggactcggttcccttacataatgaaaggtgacctttttgc
tggcttgggtag
gaattccgctgcagcgacggcagctgcattgctgagcattggtactgcga
tggtgacacagactgcaaagatggctctgatgaggaaagctgccgtgagt
gtccctacccctgaggcgctgggctggcacggtgaccaagggctccggtt
cctagctaaggattgactgagagggtcctgtgcaggcaagggagtgggcg
ttccaaaggagcatgtcggggacgtaactcatacagatgcttgcttagca
gccttggtttctatccacttctggtccactagcgtgtagaagtctgtagt
gccatcacaaaggaaagccggtttgtagcattctggaggaagacaccttg
cccctgtcaagaatcaggcccctgtccctagtcactaaggtctgaggagg
gctgctttcccttccagcttcagcagtaccctctcctccttgcaacctgg
aagagttccagtgcgcctatggccgctgcatcctcgacatctaccactgt
gacggagatgacgactgtggagactggtcagacgagtctgactgctgtga
gtgctctggctagctgggaggaggggcagccagacaggaggagcttcctc
cagtgtcagggcacaggtgccagctggggcggaaacagtgtctgaaatcc
acggtccctctggggaggagctggagtgttgggaggggcgggagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91435910_91436762
seq2: B6Ng01-310P01.b_46_907 (reverse)

seq1  CTACCC-AGCCAGCAAAATGTTC-CCCTTCATTATGGAA-GGAACCAAGT  47
      |||||| ||||||||||| | || || ||||||||| || |||||| |||
seq2  CTACCCAAGCCAGCAAAAAGGTCACCTTTCATTATGTAAGGGAACCGAGT  50

seq1  CCAAAAA-CTCT-AAGCAGAGAGCAGGTATAGC-AAAACATATATATA-T  93
      ||||||| || | |||||||||||||||||||| |||||||||||||| |
seq2  CCAAAAATCTTTAAAGCAGAGAGCAGGTATAGCAAAAACATATATATATT  100

seq1  GTGTCC-ATCTATCTTTCTAGAG-TTGCTGAGAGCTGAGCTCAGAGTCCC  141
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTCCAATCTATCTTTCTAGAGTTTGCTGAGAGCTGAGCTCAGAGTCCC  150

seq1  ATACGTGCTAGGCAAGTTCTCTACACTGAGCTATATTTCTCAACCCACCC  191
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATACGTGCTAGGCAAGTTCTCTACAGTGAGCTATATTTCTCAACCCACCC  200

seq1  CCTTTCCCCCAAAATTGAAGTTAAGGTGCAAGTCTTTGCATAAGTGAGTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCCAAAATTGAAGTTAAGGTGCAAGTCTTTGCATAAGTGAGTC  250

seq1  TCAAGAAGTCATTTATAAATGAGCAGTGAAATTTCTTCAGTGTCTGTGTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTCATTTATAAATGAGCAGTGAAATTTCTTCAGTGTCTGTGTA  300

seq1  GTTGATTCCAATTTTCTTCTTCAAACTGTGAGAGTGATGAGTTGCACACT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCCAATTTTCTTCTTCAAACTGTGAGAGTGATGAGTTGCACACT  350

seq1  GGTGGAGCCATAGTATCAGGTGATACAGGCACCACTCAGTACTACCCTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCCATAGTATCAGGTGATACAGGCACCACTCAGTACTACCCTGG  400

seq1  TGACAAAATCAAGTGCACAGGGGCCATCTGACTCACAGGCATACCTTGTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAATCAAGTGCACAGGGGCCATCTGACTCACAGGCATACCTTGTC  450

seq1  ATGAACACTTATAACACCATTGTCTCATATATGACAGTGTAAATGACAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTTATAACACCATTGTCTCATATATGACAGTGTAAATGACAGA  500

seq1  AAAATCTAAAAAGACCCAGAATAAGATTTGTCACTTCCTGTGTGCCAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAAAAGACCCAGAATAAGATTTGTCACTTCCTGTGTGCCAAAG  550

seq1  AAAAGTTGTAGAAGCTTCTATACCATATTTTTTTGAGTTTCATTAATCTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTAGAAGCTTCTATACCATATTTTTTTGAGTTTCATTAATCTA  600

seq1  TTCTTTCTTCCCCAATAGAGTGCCTGGAAGAGCTAGGTTGCTTAATTGAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCCCCAATAGAGTGCCTGGAAGAGCTAGGTTGCTTAATTGAG  650

seq1  TCCTATGGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCCTTAAAGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGTATGAATGTTTGTCAGCCAACCCCAGGAAAAGCCTTAAAGGA  700

seq1  GATAGCTATTCACATAGGAGACCGAGACAATGCTGTACGGAATGCTGCCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTATTCACATAGGAGACCGAGACAATGCTGTACGGAATGCTGCCC  750

seq1  TCAACACCATTGTAACAGTGTACAACGTGCATGGAGATCAGGTGTTCAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCATTGTAACAGTGTACAACGTGCATGGAGATCAGGTGTTCAAA  800

seq1  CTGATTGGAAATGTAAGTGACACTTCTCTGTACGCCTTGTCAGTATGTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGAAATGTAAGTGACACTTCTCTGTACGCCTTGTCAGTATGTTG  850

seq1  CAAAAAGAATTC  853
      ||||||||||||
seq2  CAAAAAGAATTC  862

seq1: chr2_91314088_91314785
seq2: B6Ng01-310P01.g_67_764

seq1  GAATTCCGCTGCAGCGACGGCAGCTGCATTGCTGAGCATTGGTACTGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCTGCAGCGACGGCAGCTGCATTGCTGAGCATTGGTACTGCGA  50

seq1  TGGTGACACAGACTGCAAAGATGGCTCTGATGAGGAAAGCTGCCGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACACAGACTGCAAAGATGGCTCTGATGAGGAAAGCTGCCGTGAGT  100

seq1  GTCCCTACCCCTGAGGCGCTGGGCTGGCACGGTGACCAAGGGCTCCGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTACCCCTGAGGCGCTGGGCTGGCACGGTGACCAAGGGCTCCGGTT  150

seq1  CCTAGCTAAGGATTGACTGAGAGGGTCCTGTGCAGGCAAGGGAGTGGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTAAGGATTGACTGAGAGGGTCCTGTGCAGGCAAGGGAGTGGGCG  200

seq1  TTCCAAAGGAGCATGTCGGGGACGTAACTCATACAGATGCTTGCTTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGAGCATGTCGGGGACGTAACTCATACAGATGCTTGCTTAGCA  250

seq1  GCCTTGGTTTCTATCCACTTCTGGTCCACTAGCGTGTAGAAGTCTGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTTTCTATCCACTTCTGGTCCACTAGCGTGTAGAAGTCTGTAGT  300

seq1  GCCATCACAAAGGAAAGCCGGTTTGTAGCATTCTGGAGGAAGACACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCACAAAGGAAAGCCGGTTTGTAGCATTCTGGAGGAAGACACCTTG  350

seq1  CCCCTGTCAAGAATCAGGCCCCTGTCCCTAGTCACTAAGGTCTGAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCAAGAATCAGGCCCCTGTCCCTAGTCACTAAGGTCTGAGGAGG  400

seq1  GCTGCTTTCCCTTCCAGCTTCAGCAGTACCCTCTCCTCCTTGCAACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCCCTTCCAGCTTCAGCAGTACCCTCTCCTCCTTGCAACCTGG  450

seq1  AAGAGTTCCAGTGCGCCTATGGCCGCTGCATCCTCGACATCTACCACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCCAGTGCGCCTATGGCCGCTGCATCCTCGACATCTACCACTGT  500

seq1  GACGGAGATGACGACTGTGGAGACTGGTCAGACGAGTCTGACTGCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGATGACGACTGTGGAGACTGGTCAGACGAGTCTGACTGCTGTGA  550

seq1  GTGCTCTGGCTAGCTGGGAGGAGGGGCAGCCAGACAGGAGGAGCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGGCTAGCTGGGAGGAGGGGCAGCCAGACAGGAGGAGCTTCCTC  600

seq1  CAGTGTCAGGGCACAGGTGCCAGCTGGGGCGGAAACAGTGTCTGAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGGCACAGGTGCCAGCTGGGGCGGAAACAGTGTCTGAAATCC  650

seq1  ACGGTCCCTCTGGGGAGGAGCTGGAGTGTTGGGAGGGGCGGGAGATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCCTCTGGGGAGGAGCTGGAGTGTTGGGAGGGGCGGGAGATGG  698