BAC Information

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BAC

Clone NameB6Ng01-311K05
Chromosome2 (Build37)
Map Location 126,130,215 - 126,315,106
singlet/doubletdoublet
Overlap geneAtp8b4
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311K05.bB6Ng01-311K05.g
ACCGA103306GA103307
length1,1081,068
definitionB6Ng01-311K05.b B6Ng01-311K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,314,002 - 126,315,106)(126,130,215 - 126,131,284)
sequence
gaattctttagatgacacaaaacaataggaactgtaatcttattttataa
tggacgtttgattcattccgaaaacacacacactgattggaagttaaaaa
agcttccacaattgagtatacccgtgtacctcttgagggcttatgaaaca
aaattcagaagtttctaacatctcactaagttcctttgtgtgttgctgtg
gttgctctctgggaattcccagccaccttctgatctctgtcaattttctt
aactgtggctgcttccaacaagacctggtgttgcaagcctttgttatgtt
aagaccgtggtccaaaatccaggtctaattctatcaatatttgaaacaat
ttctgtgtacacatgaatgtagacatggaaaaaatgggcaaaactttata
cattaaaatgaggatgtggggggagaaagagagggtggcagggagactag
tgcttcattgggagggaaagcacatctagagtactggacttggtgaagga
ggcctgtacctgctgtctctctgttcttgtacctgggtggatccaccaat
agtttcttagtcacctttgcagaatagcattcaccatctccaccctccca
actgccaagcctttgtcattggtgaggcaggctcatgcttcaaatctgac
ctcactgcatcatctccctctagctttgcttccttatgtgtaaagcgagg
ctgggaatggcacgtacttaatagcattgttttgaggactcctgaaataa
tgcctgtgaaataccctaattgtatcgagattttagcaagtgctcaaatc
agctcttgttattactgttatagcaaacattaagtctccagtcatgaatc
atgtataggaaaacaacataacaggggctaaagattgtatttgtaattta
tagtatctagtccaggtataccagaaggataaattgctgtgaagcttata
gcagccatagagggaaataaacttccagtaattgaatttttggactcttg
ggctggaatggacacatttgcaatggccttatccaagaggaaaaacaaaa
cctaccctttagcacctgtttgaatcaaccttaacttgctttcaacctct
ttttgtga
gaattccacacttgtgtactctcttccttctgatacccagctcacttgct
tgtttattaaagaatgaaaatgaatagagagaacgtaggtagccttatta
cctccatgataactttaagaactggcattggtgattcctctatgagctgg
gccagttcctggccagtgttcttaatctctggctcagatggggagttgcc
acttgcttatttcttgcctcttggagaaccatatttgccttgattcccct
ccaggcatgtggtttgagttaccttgtcccaaaacagcatgtgtggctcg
ttctgtaccatgtccataggagacttcacaaaggcttacgtatggaaagc
atttggggccgtgtctggctcagctctggggacaggtgaggtagaattga
cagctctgttttcagctgccaggtacagggagacgccctggcctcctccc
acaatgtgcttctaataaaacaggcacattgcgttcattagtgttcagat
aaacacagattggtgatgccaggactttgcagaaggagggggacactttt
caaatgtccttcatggctcctctgatacaccctgggcagctctggcatga
gcaagacgggagagtgtggagaagaaaagcaaaaagttttcccatacgac
tccactgttcttggttctccagagtagagtgatcagcatctgtttggcca
agtcacaaacataaggccttgcagaactatagagtacagcctccctccat
tgcagggcacaaagccaggggaagctgaagtactgaaattctggacccaa
atctagctccatgtaccttctggaataatccaatgccatacaaccatcta
accctttgaattcacacttagtcatgtgtgactgaagttttaagacaatt
ctcctatcctggaattcgtgaatgagcatagaccgttttgaaaattcagc
aacacccaagccaattcgtacctgcaattcaaatcaattaactgacagct
tgagactacagaatggaacactcttaggatcctgcatccaggtcttcatg
aagctaagagccactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126314002_126315106
seq2: B6Ng01-311K05.b_48_1155 (reverse)

seq1  TCAC-AAAAGAGTTTGAAAAGCAAG-TAAGG-TGATTCAAACAGGTGCTA  47
      |||| ||||||| ||| |||||||| ||||| ||||||||||||||||||
seq2  TCACAAAAAGAGGTTG-AAAGCAAGTTAAGGTTGATTCAAACAGGTGCTA  49

seq1  AAGGGTTGGGGTTTGTTTTT-CTCTTTGATAA-GCCAATGCAAATGTGTC  95
      ||||| | || ||||||||| ||||| ||||| |||| ||||||||||||
seq2  AAGGG-TAGGTTTTGTTTTTCCTCTTGGATAAGGCCATTGCAAATGTGTC  98

seq1  CA-TCCAGCCCAAAGAGTCAAAAAATTCAATTTACTGGAAGTTTTATTCC  144
      || |||||||| ||||||| |||||||||| |||||||||||||  ||||
seq2  CATTCCAGCCC-AAGAGTCCAAAAATTCAA-TTACTGGAAGTTTATTTCC  146

seq1  CTCTATGGCTGCTAT-AGCTTCACAGCAAATTTATCCTTCTGGTATACCT  193
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CTCTATGGCTGCTATAAGCTTCACAGC-AATTTATCCTTCTGGTATACCT  195

seq1  GGACTAGATACTATAAATTACAAATACAATCTTTAGCCCCTGTTATGTTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGATACTATAAATTACAAATACAATCTTTAGCCCCTGTTATGTTG  245

seq1  TTTT-CTATACATGATTCATGACTGGAGACTTAATGTTTGCTATAACAGT  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATACATGATTCATGACTGGAGACTTAATGTTTGCTATAACAGT  295

seq1  AATAACAAGAGCTGATTTGAGCACTTGCTAAAATCTCGATACAATTAGGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAGAGCTGATTTGAGCACTTGCTAAAATCTCGATACAATTAGGG  345

seq1  TATTTCACAGGCATTATTTCAGGAGTCCTCAAAACAATGCTATTAAGTAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAGGCATTATTTCAGGAGTCCTCAAAACAATGCTATTAAGTAC  395

seq1  GTGCCATTCCCAGCCTCGCTTTACACATAAGGAAGCAAAGCTAGAGGGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTCCCAGCCTCGCTTTACACATAAGGAAGCAAAGCTAGAGGGAG  445

seq1  ATGATGCAGTGAGGTCAGATTTGAAGCATGAGCCTGCCTCACCAATGACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAGTGAGGTCAGATTTGAAGCATGAGCCTGCCTCACCAATGACA  495

seq1  AAGGCTTGGCAGTTGGGAGGGTGGAGATGGTGAATGCTATTCTGCAAAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGGCAGTTGGGAGGGTGGAGATGGTGAATGCTATTCTGCAAAGG  545

seq1  TGACTAAGAAACTATTGGTGGATCCACCCAGGTACAAGAACAGAGAGACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGAAACTATTGGTGGATCCACCCAGGTACAAGAACAGAGAGACA  595

seq1  GCAGGTACAGGCCTCCTTCACCAAGTCCAGTACTCTAGATGTGCTTTCCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTACAGGCCTCCTTCACCAAGTCCAGTACTCTAGATGTGCTTTCCC  645

seq1  TCCCAATGAAGCACTAGTCTCCCTGCCACCCTCTCTTTCTCCCCCCACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGAAGCACTAGTCTCCCTGCCACCCTCTCTTTCTCCCCCCACAT  695

seq1  CCTCATTTTAATGTATAAAGTTTTGCCCATTTTTTCCATGTCTACATTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTAATGTATAAAGTTTTGCCCATTTTTTCCATGTCTACATTCA  745

seq1  TGTGTACACAGAAATTGTTTCAAATATTGATAGAATTAGACCTGGATTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACAGAAATTGTTTCAAATATTGATAGAATTAGACCTGGATTTT  795

seq1  GGACCACGGTCTTAACATAACAAAGGCTTGCAACACCAGGTCTTGTTGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACGGTCTTAACATAACAAAGGCTTGCAACACCAGGTCTTGTTGGA  845

seq1  AGCAGCCACAGTTAAGAAAATTGACAGAGATCAGAAGGTGGCTGGGAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACAGTTAAGAAAATTGACAGAGATCAGAAGGTGGCTGGGAATT  895

seq1  CCCAGAGAGCAACCACAGCAACACACAAAGGAACTTAGTGAGATGTTAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGCAACCACAGCAACACACAAAGGAACTTAGTGAGATGTTAGA  945

seq1  AACTTCTGAATTTTGTTTCATAAGCCCTCAAGAGGTACACGGGTATACTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGAATTTTGTTTCATAAGCCCTCAAGAGGTACACGGGTATACTC  995

seq1  AATTGTGGAAGCTTTTTTAACTTCCAATCAGTGTGTGTGTTTTCGGAATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGAAGCTTTTTTAACTTCCAATCAGTGTGTGTGTTTTCGGAATG  1045

seq1  AATCAAACGTCCATTATAAAATAAGATTACAGTTCCTATTGTTTTGTGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACGTCCATTATAAAATAAGATTACAGTTCCTATTGTTTTGTGTC  1095

seq1  ATCTAAAGAATTC  1105
      |||||||||||||
seq2  ATCTAAAGAATTC  1108

seq1: chr2_126130215_126131284
seq2: B6Ng01-311K05.g_67_1134

seq1  GAATTCCACACTTGTGTACTCTCTTCCTTCTGATACCCAGCTCACTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTGTGTACTCTCTTCCTTCTGATACCCAGCTCACTTGCT  50

seq1  TGTTTATTAAAGAATGAAAATGAATAGAGAGAACGTAGGTAGCCTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTAAAGAATGAAAATGAATAGAGAGAACGTAGGTAGCCTTATTA  100

seq1  CCTCCATGATAACTTTAAGAACTGGCATTGGTGATTCCTCTATGAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGATAACTTTAAGAACTGGCATTGGTGATTCCTCTATGAGCTGG  150

seq1  GCCAGTTCCTGGCCAGTGTTCTTAATCTCTGGCTCAGATGGGGAGTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCCTGGCCAGTGTTCTTAATCTCTGGCTCAGATGGGGAGTTGCC  200

seq1  ACTTGCTTATTTCTTGCCTCTTGGAGAACCATATTTGCCTTGATTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTATTTCTTGCCTCTTGGAGAACCATATTTGCCTTGATTCCCCT  250

seq1  CCAGGCATGTGGTTTGAGTTACCTTGTCCCAAAACAGCATGTGTGGCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGTGGTTTGAGTTACCTTGTCCCAAAACAGCATGTGTGGCTCG  300

seq1  TTCTGTACCATGTCCATAGGAGACTTCACAAAGGCTTACGTATGGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACCATGTCCATAGGAGACTTCACAAAGGCTTACGTATGGAAAGC  350

seq1  ATTTGGGGCCGTGTCTGGCTCAGCTCTGGGGACAGGTGAGGTAGAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGCCGTGTCTGGCTCAGCTCTGGGGACAGGTGAGGTAGAATTGA  400

seq1  CAGCTCTGTTTTCAGCTGCCAGGTACAGGGAGACGCCCTGGCCTCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTTTTCAGCTGCCAGGTACAGGGAGACGCCCTGGCCTCCTCCC  450

seq1  ACAATGTGCTTCTAATAAAACAGGCACATTGCGTTCATTAGTGTTCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGCTTCTAATAAAACAGGCACATTGCGTTCATTAGTGTTCAGAT  500

seq1  AAACACAGATTGGTGATGCCAGGACTTTGCAGAAGGAGGGGGACACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGATTGGTGATGCCAGGACTTTGCAGAAGGAGGGGGACACTTTT  550

seq1  CAAATGTCCTTCATGGCTCCTCTGATACACCCTGGGCAGCTCTGGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCCTTCATGGCTCCTCTGATACACCCTGGGCAGCTCTGGCATGA  600

seq1  GCAAGACGGGAGAGTGTGGAGAAGAAAAGCAAAAAGTTTTCCCATACGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACGGGAGAGTGTGGAGAAGAAAAGCAAAAAGTTTTCCCATACGAC  650

seq1  TCCACTGTTCTTGGTTCTCCAGAGTAGAGTGATCAGCATCTGTTTGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTCTTGGTTCTCCAGAGTAGAGTGATCAGCATCTGTTTGGCCA  700

seq1  AGTCACAAACATAAGGCCTTGCAGAACTATAGAGTACAGCCTCCCTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAACATAAGGCCTTGCAGAACTATAGAGTACAGCCTCCCTCCAT  750

seq1  TGCAGGGCACAAAGCCAGGGGAAGCTGAAGTACTGAAATTCTGGACCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCACAAAGCCAGGGGAAGCTGAAGTACTGAAATTCTGGACCCAA  800

seq1  ATCTAGCTCCATGTACCTTCTGGAATAATCC-ATGCCATACAACCATCTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTAGCTCCATGTACCTTCTGGAATAATCCAATGCCATACAACCATCTA  850

seq1  ACCCTTTGAATTCACACTTAGTCATGTGTGACTGAAGTTTTAAGACAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGAATTCACACTTAGTCATGTGTGACTGAAGTTTTAAGACAATT  900

seq1  CTTCCTATCCTGG-ATTCGTGAATGAGCATAGACCG-TTTGAAAATTCAG  947
      | ||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  C-TCCTATCCTGGAATTCGTGAATGAGCATAGACCGTTTTGAAAATTCAG  949

seq1  CAACACCCAAGCCAATTCGTACCCTGCAATTCCAATCCAATTTAACTGGA  997
      ||||||||||||||||||||| |||||||||| ||||  | |||||||  
seq2  CAACACCCAAGCCAATTCGTA-CCTGCAATTCAAATC--AATTAACTG--  994

seq1  CCAGCTTGAGACTACAGAATGG-ACACTCTTAAGAATTCTGCAT-CAAGT  1045
       ||||||||||||||||||||| |||||||| || || |||||| || ||
seq2  ACAGCTTGAGACTACAGAATGGAACACTCTT-AGGATCCTGCATCCAGGT  1043

seq1  CTTCATGGAGCTAAGAGCCACTATT  1070
      ||||||| |||||||||||||||||
seq2  CTTCATGAAGCTAAGAGCCACTATT  1068