BAC Information

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BAC

Clone NameB6Ng01-312D12
Chromosome2 (Build37)
Map Location 44,900,774 - 45,071,126
singlet/doubletdoublet
Overlap geneZeb2
Upstream geneArhgap15, Gtdc1
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312D12.bB6Ng01-312D12.g
ACCGA103742GA103743
length1,138359
definitionB6Ng01-312D12.b B6Ng01-312D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,900,774 - 44,901,891)(45,070,762 - 45,071,126)
sequence
gaattcattttttttttttacaggaaatgtatatccttgtaagtctatcg
tcttatttagtttctatattataggtctagctaatctaaaaccatttcct
tatcatctggcatgctaacagtaccgtcatcaaaacaaacaatctgttaa
tataacttaggttgtggaaagcggagtagggtgtgctatatttaatatgc
agacaacagggctgagatccttcttgaggtgcttggtcagggaaggccac
ttgggttgattctgaagggtctggattgccttctaaattctaggagccat
tcaggtctagttttagtactaaaatcattcacacacacacacacacacac
acacacacacgcgcgcgcacgcgcacacacacacacacactcacacacac
acacactcacacacacacactcacacacacacgcacactcacacacacac
gcacactcacacacacacacacactcacacacacacacacgtgcgcacac
actcacacgcacactcacacacacacacactcacacacacacacacgcgc
gcacacactcacacacacacacacgcgcgcacacactcacacacacacac
acacactcacacacacacacacacacacacacacactcatcatgacagta
ctggatgtttgcctgtggggactcggcacctccagatttcccatctgcat
cgggccgttcccttctcttctcttcatttgtggtgtttcatctccattcc
ttccctgagactccgtggtctcaaagtttcagcacacacaaaggcagagt
gaggcggcatttctatgcatagactcattagcttgggagcctagccctct
ctgtcactttaaataaatttaaaatgagatttagaaaaacacaaaggccc
tggtctgtaaatcattctattagttatgtctgagtgcacttaggttgatt
accctgatgtcttgcatgattaaatactaaccaagaggttgtgggcccaa
cctgccgatccccctccccccttccctgggaggaggaaaatggcaaagta
ccatcgcctggtgggactctttcaggtttacatcacctgaccaaaaaacc
aaaaaggccctggagaaggtgaaaggctgacctttaaa
attcagaagtaaaatatttatttggttcaaggtgtgccatagaatttgtc
catttgtattttgttattagcaggtcaaaactctgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagaagaaaatgct
ttatttaatgggctactgagtaacttttgttattactggtgaaattcaag
ccagggaaacaacttatgcatttatgtttaagatcctctgtgctgagctt
ctcatcagtttgtgtttcaataactccttagtctctgctggctttactca
acttggaagtgggcacgaatagcaggacctccacagccatcctcttcaga
atatgtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44900774_44901891
seq2: B6Ng01-312D12.b_46_1183

seq1  GAATTCATTTTTTTTTTTTACAGGAAATGTATATCCTTGTAAGTCTATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTTTTTTACAGGAAATGTATATCCTTGTAAGTCTATCG  50

seq1  TCTTATTTAGTTTCTATATTATAGGTCTAGCTAATCTAAAACCATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTAGTTTCTATATTATAGGTCTAGCTAATCTAAAACCATTTCCT  100

seq1  TATCATCTGGCATGCTAACAGTACCGTCATCAAAACAAACAATCTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGGCATGCTAACAGTACCGTCATCAAAACAAACAATCTGTTAA  150

seq1  TATAACTTAGGTTGTGGAAAGCGGAGTAGGGTGTGCTATATTTAATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTAGGTTGTGGAAAGCGGAGTAGGGTGTGCTATATTTAATATGC  200

seq1  AGACAACAGGGCTGAGATCCTTCTTGAGGTGCTTGGTCAGGGAAGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGGGCTGAGATCCTTCTTGAGGTGCTTGGTCAGGGAAGGCCAC  250

seq1  TTGGGTTGATTCTGAAGGGTCTGGATTGCCTTCTAAATTCTAGGAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGATTCTGAAGGGTCTGGATTGCCTTCTAAATTCTAGGAGCCAT  300

seq1  TCAGGTCTAGTTTTAGTACTAAAATCATTCACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTAGTTTTAGTACTAAAATCATTCACACACACACACACACACAC  350

seq1  ACACACACACGCGCGCGCACGCGCACACACACACACACACTCACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGCGCGCGCACGCGCACACACACACACACACTCACACACAC  400

seq1  ACACACTCACACACACACACTCACACACACACGCACACTCACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACACACACACACTCACACACACACGCACACTCACACACACAC  450

seq1  GCACACTCACACACACACACACACTCACACACACACACACGTGCGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCACACACACACACACACTCACACACACACACACGTGCGCACAC  500

seq1  ACTCACACGCACACTCACACACACACACACTCACACACACACACACGCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACGCACACTCACACACACACACACTCACACACACACACACGCGC  550

seq1  GCACACACTCACACACACACACACGCGCGCACACACTCACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTCACACACACACACACGCGCGCACACACTCACACACACACAC  600

seq1  ACACACTCACACACACACACACACACACACACACACTCATCAGGACAGTA  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACTCACACACACACACACACACACACACACACTCATCATGACAGTA  650

seq1  CTGGATGTTTGCCTGTGGGGACTCGGCACCTCCAGATTTCCCATCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTTGCCTGTGGGGACTCGGCACCTCCAGATTTCCCATCTGCAT  700

seq1  CGGGCCGTTCCCTTCTCTTCTCTTCATTTGTGGTGTTTCATCTCCATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCGTTCCCTTCTCTTCTCTTCATTTGTGGTGTTTCATCTCCATTCC  750

seq1  TTCCCTGAGACTCCGTGGTCTCAAAGTTTCAGCACACACAAAGGCAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGACTCCGTGGTCTCAAAGTTTCAGCACACACAAAGGCAGAGT  800

seq1  GAGGCGGCATTTCTATGCATAGACTCATTAGCTT-GGAGCCTAG-CCTCT  848
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GAGGCGGCATTTCTATGCATAGACTCATTAGCTTGGGAGCCTAGCCCTCT  850

seq1  CTGTCACTTTAAATAAA-TTAAAATGAGATTTAGAAAAACACAAAGG-CC  896
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CTGTCACTTTAAATAAATTTAAAATGAGATTTAGAAAAACACAAAGGCCC  900

seq1  TGGTCTGTAAATCATTCTATTAG-TATGTCTGAGTGCACTTAGG-TGATT  944
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TGGTCTGTAAATCATTCTATTAGTTATGTCTGAGTGCACTTAGGTTGATT  950

seq1  A-CCTGATGTC-TGCATGATT-AATACTAACC-AGAGG-TGTGGG-CCAA  988
      | ||||||||| ||||||||| |||||||||| ||||| |||||| ||||
seq2  ACCCTGATGTCTTGCATGATTAAATACTAACCAAGAGGTTGTGGGCCCAA  1000

seq1  ACTGCCGA--CCCCT-CCCCCTTCC--TGGAGGAGGAAAAAGGGCAAAGT  1033
       |||||||  ||||| |||||||||   |||||||| |||| ||||||||
seq2  CCTGCCGATCCCCCTCCCCCCTTCCCTGGGAGGAGG-AAAATGGCAAAGT  1049

seq1  ACCATCGC--TGTGGGACTC-TTCA-GTTTACATCA-CTGAACAAAAAAA  1078
      ||||||||   ||||||||| |||| |||||||||| |||| ||||||| 
seq2  ACCATCGCCTGGTGGGACTCTTTCAGGTTTACATCACCTGACCAAAAAAC  1099

seq1  CAAAAA-GCCTTGGAGAAAGGTGAAAAGCTGACATTTTAAA  1118
      |||||| ||| ||||| ||||||||| |||||| ||| || 
seq2  CAAAAAGGCCCTGGAG-AAGGTGAAAGGCTGACCTTTAAA-  1138

seq1: chr2_45070762_45071126
seq2: B6Ng01-312D12.g_71_435 (reverse)

seq1  TTGACATATTCTGAAGGGGATGGCTGTGGAGGTCCTGCTTTTCTTGCCCA  50
      |||||||||||||||| |||||||||||||||||||||| ||| ||||||
seq2  TTGACATATTCTGAAGAGGATGGCTGTGGAGGTCCTGCTATTCGTGCCCA  50

seq1  CTTCCCAGCTGAGTAAAGCCAGCAAAGACTAAGGAGTTCTTGAACCCCAG  100
      ||||| || ||||||||||||||| ||||||||||||| ||||| | || 
seq2  CTTCCAAGTTGAGTAAAGCCAGCAGAGACTAAGGAGTTATTGAAACACAA  100

seq1  ACTGATGAGAAGCTCAGCACAGAGGCTCTTTTACATCTGTGCATATGTTG  150
      ||||||||||||||||||||||||| ||||  ||||   |||||| ||||
seq2  ACTGATGAGAAGCTCAGCACAGAGGATCTTAAACATAAATGCATAAGTTG  150

seq1  TTTCCCTGGCTAGAATTTCACCAGTAATAACAAAAGTTACTCAGTAGCCC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGCTTGAATTTCACCAGTAATAACAAAAGTTACTCAGTAGCCC  200

seq1  ATTAAATAAAGCATTTTCTTCTATCACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAAGCATTTTCTTCTATCACACACACACACACACACACACACA  250

seq1  CACACACACACACACACACACACACAGAGTTTTGACCTGCTAATAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACAGAGTTTTGACCTGCTAATAACAAA  300

seq1  ATACAAATGGACAAATTCTATGGCACACCTTGAACCAAATAAATATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATGGACAAATTCTATGGCACACCTTGAACCAAATAAATATTTTA  350

seq1  CTTCTGAATGAATTC  365
      |||||||||||||||
seq2  CTTCTGAATGAATTC  365